FvH4_2g29540

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006028
Physical Location & Seq
Reverse (-)
22865757 .. 22867066
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29540.t2

Sequence Viewer

Length: 516 bp
ATGAACAGGCCAGGAGATTGGAACTGCAGGTCATGCAACCATCTCAATTTCCAAAGGAGGGACTCATGCCAGAGGTGTGGAGAGCCAAGGCCCGGCGAGAGAGGTGGTACTGACTTTGGAAGCAGCTTTGGTGGCGGAAGAGGTGGTGGTGTTGGTGGTTCGTTCGGGTTCACTACCGGCCCGGATGTCAGGCCCGGTGACTGGTATTGCAACGTTGGCAACTGTGGAGCTCATAACTTCGCCAGCCGCTCCAGCTGCTTTAAGTGTGGTGCGTCCAAGGATGAGTCCTCTAGTGGAGGTGGTGGCTTTGACGGTGACATGCCTAGGTCACTTAGAGGCGGTTTTGGATTTGGCGGCAGTGGTAGTGGCAGCAGCTCTGGCCGCTCTGGATGGAAATCCGGTGACTGGATTTGCACAAGGTTAGGTTGCAATGAGCACAACTTCGCAAGCAGGACAGAATGTTTCAGATGCAATGCTCCAAGGGAATCTAGTGCTGGCAGTGCTGCACTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

172

Amino Acids

17.82

Weight (kDa)

8.67

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 132 - 162 1.8e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 2 cut(s) 249, 384
AciI CCGC 5 cut(s) 135, 247, 339, 354, 382
AclI AACGTT 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 379
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 4 cut(s) 58, 92, 201, 405
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 4 cut(s) 126, 230, 255, 375
AluI AGCT 4 cut(s) 126, 230, 255, 375
Alw21I GWGCWC 2 cut(s) 232, 438
AoxI GGCC 5 cut(s) 8, 89, 178, 191, 379
ApeKI GCWGC 5 cut(s) 123, 255, 369, 372, 503
AspA2I CCTAGG 1 cut(s) 323
AspS9I GGNCC 3 cut(s) 90, 179, 192
AsuC2I CCSGG 3 cut(s) 93, 182, 195
AsuHPI GGTGA 3 cut(s) 209, 326, 413
AvrII CCTAGG 1 cut(s) 323
BanII GRGCYC 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 232, 438
BbvI GCAGC 5 cut(s) 135, 242, 381, 384, 490
BccI CCATC 2 cut(s) 48, 384
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 3 cut(s) 93, 182, 195
BfaI CTAG 3 cut(s) 291, 324, 489
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 8 cut(s) 124, 247, 256, 355, 370, 373, 382, 504
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 8 cut(s) 125, 248, 257, 356, 371, 374, 383, 505
Bme1390I CCNGG 4 cut(s) 12, 93, 182, 195
BmgT120I GGNCC 3 cut(s) 90, 179, 192
BmrFI CCNGG 4 cut(s) 12, 93, 182, 195
BmsI GCATC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 235
BpuMI CCSGG 3 cut(s) 93, 182, 195
BsaBI GATNNNNATC 1 cut(s) 394
BsaJI CCNNGG 4 cut(s) 86, 276, 323, 479
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 92, 201, 405
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 206, 410
Bse3DI GCAATG 2 cut(s) 436, 478
Bse8I GATNNNNATC 1 cut(s) 394
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 4 cut(s) 86, 276, 323, 479
BseGI GGATG 3 cut(s) 190, 286, 395
BseJI GATNNNNATC 1 cut(s) 394
BseLI CCNNNNNNNGG 4 cut(s) 58, 92, 201, 405
BseMI GCAATG 2 cut(s) 436, 478
BseNI ACTGG 2 cut(s) 206, 410
BseXI GCAGC 5 cut(s) 135, 242, 381, 384, 490
BsgI GTGCAG 1 cut(s) 489
BshFI GGCC 5 cut(s) 10, 91, 180, 193, 381
BsiHKAI GWGCWC 2 cut(s) 232, 438
BsiSI CCGG 5 cut(s) 93, 177, 182, 195, 399
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 4 cut(s) 58, 92, 201, 405
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 5 cut(s) 10, 91, 180, 193, 381
Bsp1286I GDGCHC 2 cut(s) 232, 438
BspACI CCGC 5 cut(s) 135, 247, 339, 354, 382
BspANI GGCC 5 cut(s) 10, 91, 180, 193, 381
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BsrBI CCGCTC 2 cut(s) 249, 384
BsrDI GCAATG 2 cut(s) 436, 478
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 2 cut(s) 206, 410
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 4 cut(s) 86, 276, 323, 479
BssT1I CCWWGG 4 cut(s) 86, 276, 323, 479
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 224, 314
Bst6I CTCTTC 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 3 cut(s) 244, 448, 496
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 3 cut(s) 190, 286, 395
BstMWI GCNNNNNNNGC 8 cut(s) 33, 132, 216, 252, 255, 378, 381, 500
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 4 cut(s) 10, 91, 180, 193
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 5 cut(s) 135, 242, 381, 384, 490
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 5 cut(s) 10, 91, 180, 193, 381
BtsCI GGATG 3 cut(s) 190, 286, 395
BtsI GCAGTG 2 cut(s) 364, 505
BtsIMutI CAGTG 2 cut(s) 364, 505
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 244, 448, 496
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 90, 179, 192
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 108
CviAII CATG 3 cut(s) 33, 66, 319
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 230
Eco130I CCWWGG 4 cut(s) 86, 276, 323, 479
Eco24I GRGCYC 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 4 cut(s) 86, 276, 323, 479
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 4 cut(s) 86, 276, 323, 479
FaeI CATG 3 cut(s) 36, 69, 322
FaiI YATR 4 cut(s) 34, 67, 234, 320
FaqI GGGAC 1 cut(s) 74
FatI CATG 3 cut(s) 32, 65, 318
Fnu4HI GCNGC 8 cut(s) 124, 247, 256, 355, 370, 373, 382, 504
FokI GGATG 3 cut(s) 197, 293, 402
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 8 cut(s) 124, 247, 256, 355, 370, 373, 382, 504
FspBI CTAG 3 cut(s) 291, 324, 489
GluI GCNGC 8 cut(s) 124, 247, 256, 355, 370, 373, 382, 504
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 10, 91, 180, 193, 381
HapII CCGG 5 cut(s) 93, 177, 182, 195, 399
HgaI GACGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 36, 69, 322
HinfI GANTC 3 cut(s) 62, 284, 485
HpaII CCGG 5 cut(s) 93, 177, 182, 195, 399
HphI GGTGA 3 cut(s) 209, 326, 413
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 467, 515
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 1 cut(s) 171
HpyCH4III ACNGT 2 cut(s) 224, 314
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 7 cut(s) 27, 36, 210, 414, 429, 471, 506
HpyF10VI GCNNNNNNNGC 8 cut(s) 33, 132, 216, 252, 255, 378, 381, 500
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 3 cut(s) 36, 69, 322
LmnI GCTCC 3 cut(s) 227, 254, 481
Lsp1109I GCAGC 5 cut(s) 135, 242, 381, 384, 490
LweI GCATC 1 cut(s) 458
MaeI CTAG 3 cut(s) 291, 324, 489
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 4 cut(s) 197, 314, 327, 401
MbiI CCGCTC 2 cut(s) 249, 384
MboII GAAGA 1 cut(s) 150
MhlI GDGCHC 2 cut(s) 232, 438
MluCI AATT 1 cut(s) 46
MlyI GAGTC 2 cut(s) 56, 293
MnlI CCTC 7 cut(s) 51, 66, 95, 134, 290, 298, 329
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 5 cut(s) 93, 177, 182, 195, 399
MspR9I CCNGG 4 cut(s) 12, 93, 182, 195
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 8 cut(s) 33, 132, 216, 252, 255, 378, 381, 500
NciI CCSGG 3 cut(s) 93, 182, 195
NlaIII CATG 3 cut(s) 36, 69, 322
NmuCI GTSAC 4 cut(s) 197, 314, 327, 401
NspI RCATGY 1 cut(s) 322
PfeI GAWTC 1 cut(s) 485
PkrI GCNGC 8 cut(s) 125, 248, 257, 356, 371, 374, 383, 505
PleI GAGTC 2 cut(s) 56, 292
PpsI GAGTC 2 cut(s) 56, 292
Psp124BI GAGCTC 1 cut(s) 232
Psp1406I AACGTT 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspPI GGNCC 3 cut(s) 90, 179, 192
PstI CTGCAG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 255
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SacI GAGCTC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 8 cut(s) 124, 247, 256, 355, 370, 373, 382, 504
Sau96I GGNCC 3 cut(s) 90, 179, 192
SchI GAGTC 2 cut(s) 56, 293
ScrFI CCNGG 4 cut(s) 12, 93, 182, 195
SduI GDGCHC 2 cut(s) 232, 438
SfaNI GCATC 1 cut(s) 458
SfcI CTRYAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 46
SsiI CCGC 5 cut(s) 135, 247, 339, 354, 382
SspMI CTAG 3 cut(s) 291, 324, 489
SstI GAGCTC 1 cut(s) 232
StyD4I CCNGG 4 cut(s) 10, 91, 180, 193
StyI CCWWGG 4 cut(s) 86, 276, 323, 479
TaaI ACNGT 2 cut(s) 224, 314
TaiI ACGT 1 cut(s) 216
TasI AATT 1 cut(s) 46
TauI GCSGC 3 cut(s) 249, 357, 384
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 364, 505
TseFI GTSAC 4 cut(s) 197, 314, 327, 401
TseI GCWGC 5 cut(s) 123, 255, 369, 372, 503
Tsp45I GTSAC 4 cut(s) 197, 314, 327, 401
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 364, 505
XceI RCATGY 1 cut(s) 322
XmaJI CCTAGG 1 cut(s) 323
XspI CTAG 3 cut(s) 291, 324, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.