RchiOBHm_Chr6g0298401

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006028
Physical Location & Seq
Reverse (-)
59855209 .. 59856607
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26787

Sequence Viewer

Length: 210 bp
ATGCCTAGGTCACTTAGAGGCGGTTTTGGATTTGGCGGCAGTGGCAGTGGCAGTGGTAGTGGTGGCAGCTCTGGTCGCTCTGGATGGAAATCCGGGGACTGGATTTGCACAAGGTTAGGGTGCAATGAGCACAACTTCGCAAGCAGGACGGAATGTTTCAGATGCAATGCTCCAAGGGAATCTAGTACCGGTGGTGCTGTACTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

69

Amino Acids

7.09

Weight (kDa)

9.37

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 30 - 60 3e-09 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 36
AfaI GTAC 2 cut(s) 187, 201
AfiI CCNNNNNNNGG 1 cut(s) 99
AgeI ACCGGT 1 cut(s) 188
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw21I GWGCWC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 66
AsiGI ACCGGT 1 cut(s) 188
AspA2I CCTAGG 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 94
AvrII CCTAGG 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 78
BcnI CCSGG 1 cut(s) 94
BfaI CTAG 2 cut(s) 6, 183
BisI GCNGC 2 cut(s) 37, 67
BlnI CCTAGG 1 cut(s) 5
BlsI GCNGC 2 cut(s) 38, 68
Bme1390I CCNGG 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 5, 93, 173
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 2 cut(s) 130, 172
Bse8I GATNNNNATC 1 cut(s) 88
BseDI CCNNGG 3 cut(s) 5, 93, 173
BseGI GGATG 1 cut(s) 89
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 2 cut(s) 130, 172
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 78
BshTI ACCGGT 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 93, 189
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 132
BspACI CCGC 2 cut(s) 21, 36
BsrDI GCAATG 2 cut(s) 130, 172
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 3 cut(s) 5, 93, 173
BssT1I CCWWGG 2 cut(s) 5, 173
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 89
BstMWI GCNNNNNNNGC 2 cut(s) 42, 75
BstSCI CCNGG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 3 cut(s) 46, 52, 58
BtsIMutI CAGTG 3 cut(s) 46, 52, 58
Cac8I GCNNGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 188
Csp6I GTAC 2 cut(s) 186, 200
CspAI ACCGGT 1 cut(s) 188
CviJI RGCY 1 cut(s) 69
CviKI_1 RGCY 1 cut(s) 69
CviQI GTAC 2 cut(s) 186, 200
DdeI CTNAG 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 5, 173
EcoT14I CCWWGG 2 cut(s) 5, 173
ErhI CCWWGG 2 cut(s) 5, 173
FaqI GGGAC 1 cut(s) 110
Fnu4HI GCNGC 2 cut(s) 37, 67
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 37, 67
FspBI CTAG 2 cut(s) 6, 183
GluI GCNGC 2 cut(s) 37, 67
HapII CCGG 2 cut(s) 93, 189
HinfI GANTC 1 cut(s) 179
HpaII CCGG 2 cut(s) 93, 189
Hpy188I TCNGA 2 cut(s) 161, 209
Hpy188III TCNNGA 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 108, 123, 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 75
HpyF3I CTNAG 1 cut(s) 14
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 6 cut(s) 57, 66, 85, 106, 130, 202
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 1 cut(s) 152
MaeI CTAG 2 cut(s) 6, 183
MaeIII GTNAC 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 132
MnlI CCTC 1 cut(s) 11
MspI CCGG 2 cut(s) 93, 189
MspR9I CCNGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 42, 75
NciI CCSGG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 188
PkrI GCNGC 2 cut(s) 38, 68
RsaI GTAC 2 cut(s) 187, 201
RsaNI GTAC 2 cut(s) 186, 200
SatI GCNGC 2 cut(s) 37, 67
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 1 cut(s) 132
SetI ASST 3 cut(s) 11, 71, 116
SfaNI GCATC 1 cut(s) 152
SsiI CCGC 2 cut(s) 21, 36
SspMI CTAG 2 cut(s) 6, 183
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 2 cut(s) 5, 173
TatI WGTACW 1 cut(s) 199
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 1 cut(s) 179
TscAI CASTG 3 cut(s) 46, 52, 58
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 9
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 3 cut(s) 46, 52, 58
XmaJI CCTAGG 1 cut(s) 5
XspI CTAG 2 cut(s) 6, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.