MD15G1121500.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0006028
Physical Location & Seq
Forward (+)
8726127 .. 8727722
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1121500.v1.1.491

Sequence Viewer

Length: 498 bp
ATGAGCAGGCCAGGAGATTGGAACTGTAGGTCATGCAACCATCTCAACTTCCAAAGGAGGGACTCGTGCCACAGGTGTGGGGATCCAAAAAGTGGGGAGAGAGTTGAGTATGGAAGTTTTGGTGGTGGAAGAGGTGGAGGTGGCGGTGGCTCGTTTGGATTCACCACTGGTCCAGATGTCCGCCCCGGTGACTGGTACTGCACCATTGGCAACTGTGGAGCTCACAACTTTGCCAGCCGCTCCAGTTGCTTCAAGTGTGGTGCGTCTAAGGACGAATTGTCAAGTGGCGGGGGCGGTGGTTTTGAGGGCGACATGCCTAGGTCACTGAGAGGGTTTGGCTTTGGCAGCAGTGGAAGTAGCTCTGGTCGCTCCGGATGGAAATCTGGAGACTGGATTTGCACAAGGTCAGGGTGCAATGAGCACAACTTCGCTAGCAGAACAGAATGTTTCAGATGCAATGCTCCAAGAGACTCCAACGATGACAAGTCTCCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

166

Amino Acids

17.52

Weight (kDa)

8.49

Isoelectric Point (pI)

69.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 127 - 156 4.4e-09 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 371
AciI CCGC 5 cut(s) 144, 181, 238, 288, 294
AclWI GGATC 2 cut(s) 77, 90
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 3 cut(s) 58, 92, 192
AgsI TTSAA 1 cut(s) 253
AhdI GACNNNNNGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 10
AleI CACNNNNGTG 1 cut(s) 75
AluBI AGCT 2 cut(s) 221, 360
AluI AGCT 2 cut(s) 221, 360
Alw21I GWGCWC 2 cut(s) 223, 423
Alw26I GTCTC 3 cut(s) 381, 462, 492
AlwI GGATC 2 cut(s) 77, 90
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 345
AspA2I CCTAGG 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 154, 200
AsuNHI GCTAGC 1 cut(s) 431
AvaII GGWCC 1 cut(s) 170
AvrII CCTAGG 1 cut(s) 317
BamHI GGATCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 223
BauI CACGAG 1 cut(s) 64
Bbv12I GWGCWC 2 cut(s) 223, 423
BbvI GCAGC 1 cut(s) 357
BccI CCATC 2 cut(s) 48, 369
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 3 cut(s) 381, 462, 492
BfaI CTAG 2 cut(s) 318, 432
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 2 cut(s) 238, 346
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 2 cut(s) 239, 347
Bme1390I CCNGG 2 cut(s) 12, 186
Bme18I GGWCC 1 cut(s) 170
BmeRI GACNNNNNGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 2 cut(s) 12, 186
BmsI GCATC 1 cut(s) 443
BmtI GCTAGC 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 226, 405
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 184, 317
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 92, 192
Bse1I ACTGG 4 cut(s) 172, 197, 243, 395
Bse3DI GCAATG 2 cut(s) 421, 463
Bse8I GATNNNNATC 1 cut(s) 379
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 184, 317
BseGI GGATG 1 cut(s) 380
BseJI GATNNNNATC 1 cut(s) 379
BseLI CCNNNNNNNGG 3 cut(s) 58, 92, 192
BseMI GCAATG 2 cut(s) 421, 463
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 4 cut(s) 172, 197, 243, 395
BseXI GCAGC 1 cut(s) 357
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 223, 423
BsiSI CCGG 2 cut(s) 186, 372
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 3 cut(s) 58, 92, 192
BsmAI GTCTC 3 cut(s) 381, 462, 492
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 223, 423
Bsp13I TCCGGA 1 cut(s) 371
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 5 cut(s) 144, 181, 238, 288, 294
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 318
BspEI TCCGGA 1 cut(s) 371
BspLI GGNNCC 1 cut(s) 84
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 2 cut(s) 77, 90
BsrBI CCGCTC 1 cut(s) 240
BsrDI GCAATG 2 cut(s) 421, 463
BsrI ACTGG 4 cut(s) 172, 197, 243, 395
BssECI CCNNGG 2 cut(s) 184, 317
BssMI GATC 1 cut(s) 82
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 317
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 26, 215
Bst6I CTCTTC 1 cut(s) 124
BstC8I GCNNGC 3 cut(s) 8, 235, 433
BstDEI CTNAG 2 cut(s) 267, 326
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 3 cut(s) 381, 462, 492
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 207, 246, 345, 366
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 10, 184
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 82
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 380
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 3 cut(s) 165, 323, 355
Cac8I GCNNGC 3 cut(s) 8, 235, 433
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 33, 313
CviJI RGCY 6 cut(s) 10, 150, 221, 237, 339, 360
CviKI_1 RGCY 6 cut(s) 10, 150, 221, 237, 339, 360
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 267, 326
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DriI GACNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 317
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 2 cut(s) 36, 316
FaiI YATR 3 cut(s) 34, 111, 314
FaqI GGGAC 1 cut(s) 74
FatI CATG 2 cut(s) 32, 312
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 238, 346
FokI GGATG 1 cut(s) 387
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 238, 346
FspBI CTAG 2 cut(s) 318, 432
GluI GCNGC 2 cut(s) 238, 346
GsuI CTGGAG 2 cut(s) 226, 405
HaeIII GGCC 1 cut(s) 10
HapII CCGG 2 cut(s) 186, 372
HgaI GACGC 1 cut(s) 252
Hin1II CATG 2 cut(s) 36, 316
HinfI GANTC 3 cut(s) 62, 159, 470
HpaII CCGG 2 cut(s) 186, 372
HphI GGTGA 2 cut(s) 154, 200
Hpy188I TCNGA 1 cut(s) 452
Hpy188III TCNNGA 3 cut(s) 173, 372, 384
HpyCH4III ACNGT 2 cut(s) 26, 215
HpyCH4V TGCA 5 cut(s) 36, 201, 399, 414, 456
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 246, 345, 366
HpyF3I CTNAG 2 cut(s) 267, 326
Hsp92II CATG 2 cut(s) 36, 316
Kpn2I TCCGGA 1 cut(s) 371
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 4 cut(s) 218, 245, 374, 466
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 1 cut(s) 443
MaeI CTAG 2 cut(s) 318, 432
MaeIII GTNAC 2 cut(s) 188, 321
MalI GATC 1 cut(s) 84
MbiI CCGCTC 1 cut(s) 240
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 141
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 223, 423
MluCI AATT 1 cut(s) 275
MlyI GAGTC 2 cut(s) 56, 464
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 5 cut(s) 51, 125, 131, 298, 323
MroI TCCGGA 1 cut(s) 371
MseI TTAA 1 cut(s) 496
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 2 cut(s) 186, 372
MspR9I CCNGG 2 cut(s) 12, 186
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 4 cut(s) 207, 246, 345, 366
NciI CCSGG 1 cut(s) 186
NdeII GATC 1 cut(s) 82
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 2 cut(s) 36, 316
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 188, 321
NspI RCATGY 1 cut(s) 316
OliI CACNNNNGTG 1 cut(s) 75
PfeI GAWTC 1 cut(s) 159
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 2 cut(s) 239, 347
PleI GAGTC 2 cut(s) 56, 464
PpsI GAGTC 2 cut(s) 56, 464
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 2 cut(s) 238, 346
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 2 cut(s) 56, 464
ScrFI CCNGG 2 cut(s) 12, 186
SduI GDGCHC 2 cut(s) 223, 423
SetI ASST 8 cut(s) 32, 77, 136, 142, 223, 323, 362, 407
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 1 cut(s) 25
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 275
SsiI CCGC 5 cut(s) 144, 181, 238, 288, 294
SspMI CTAG 2 cut(s) 318, 432
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 10, 184
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 2 cut(s) 26, 215
TasI AATT 1 cut(s) 275
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 3 cut(s) 172, 330, 355
TseFI GTSAC 2 cut(s) 188, 321
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 2 cut(s) 188, 321
TspRI CASTG 3 cut(s) 172, 330, 355
Van91I CCANNNNNTGG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 170
XceI RCATGY 1 cut(s) 316
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 2 cut(s) 318, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.