Prupe.1G474600_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006028
Physical Location & Seq
Forward (+)
39431542 .. 39433083
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G474600.1

Sequence Viewer

Length: 477 bp
ATGAGCAGGCCAGGAGATTGGAACTGTAGGTCATGCAACCATCTCAACTTCCAAAGGAGGGACTCGTGCCAGAGGTGCGGGGAGCCAAAAAGTGGGGAGAGAGTTGAGTATGGAAGTTTTGGTGGAAGAGGTGGAGGTGGTGGTTCATTCGGATTCACCACTGGCCCGGATGTCCGTCCCGGTGACTGGTACTGCACCATTGGCAATTGTGCAGCGCATAACTTTGCCAGCCGCTCCAGCTGCTTCAAGTGTGGTGCGTCCAAGGATGAATCTTCCAGTGGCGGAGGTGGCGGCTATGAGGGTAGAGGGTTTGGATTTGGGAGCGGTGGAAGTAGCTCTGGTCGCTCCGGATGGAAATCCGGAGATTGGATTTGCACAAGGTCAGGGTGCAATGAGCACAACTTCGCTAGCAGGACGGAATGTTTCAGATGCAATGCTCCAAGGGACAACAATGGTGGTACTGCTGTACTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

159

Amino Acids

16.62

Weight (kDa)

8.61

Isoelectric Point (pI)

58.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 92
AccBSI CCGCTC 2 cut(s) 234, 324
AccIII TCCGGA 2 cut(s) 347, 359
AciI CCGC 5 cut(s) 78, 232, 282, 291, 324
AfaI GTAC 3 cut(s) 191, 460, 468
AfiI CCNNNNNNNGG 4 cut(s) 58, 92, 186, 366
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 2 cut(s) 240, 336
AluI AGCT 2 cut(s) 240, 336
Alw21I GWGCWC 1 cut(s) 399
Aor13HI TCCGGA 2 cut(s) 347, 359
AoxI GGCC 2 cut(s) 8, 163
ApeKI GCWGC 2 cut(s) 212, 240
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 2 cut(s) 167, 180
AsuHPI GGTGA 2 cut(s) 148, 194
AsuNHI GCTAGC 1 cut(s) 407
BaeI ACNNNNGTAYC 1 cut(s) 450
BauI CACGAG 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 224, 227
BccI CCATC 2 cut(s) 48, 345
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 2 cut(s) 167, 180
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 4 cut(s) 213, 232, 241, 292
BlsI GCNGC 4 cut(s) 214, 233, 242, 293
Bme1390I CCNGG 3 cut(s) 12, 167, 180
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 3 cut(s) 12, 167, 180
BmsI GCATC 1 cut(s) 419
BmtI GCTAGC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 220
BpuMI CCSGG 2 cut(s) 167, 180
BsaBI GATNNNNATC 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 261, 440
BsaWI WCCGGW 2 cut(s) 347, 359
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 92, 186, 366
Bse1I ACTGG 3 cut(s) 166, 191, 276
Bse3DI GCAATG 2 cut(s) 397, 439
Bse8I GATNNNNATC 1 cut(s) 355
BseAI TCCGGA 2 cut(s) 347, 359
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 261, 440
BseGI GGATG 3 cut(s) 175, 271, 356
BseJI GATNNNNATC 1 cut(s) 355
BseLI CCNNNNNNNGG 4 cut(s) 58, 92, 186, 366
BseMI GCAATG 2 cut(s) 397, 439
BseNI ACTGG 3 cut(s) 166, 191, 276
BseXI GCAGC 2 cut(s) 224, 227
BsgI GTGCAG 2 cut(s) 178, 231
BshFI GGCC 2 cut(s) 10, 165
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 4 cut(s) 167, 180, 348, 360
BslFI GGGAC 3 cut(s) 74, 162, 458
BslI CCNNNNNNNGG 4 cut(s) 58, 92, 186, 366
BsmFI GGGAC 3 cut(s) 74, 162, 458
BsnI GGCC 2 cut(s) 10, 165
Bsp1286I GDGCHC 1 cut(s) 399
Bsp13I TCCGGA 2 cut(s) 347, 359
BspACI CCGC 5 cut(s) 78, 232, 282, 291, 324
BspANI GGCC 2 cut(s) 10, 165
BspEI TCCGGA 2 cut(s) 347, 359
BspLI GGNNCC 1 cut(s) 84
BspOI GCTAGC 1 cut(s) 411
BsrBI CCGCTC 2 cut(s) 234, 324
BsrDI GCAATG 2 cut(s) 397, 439
BsrI ACTGG 3 cut(s) 166, 191, 276
BssECI CCNNGG 2 cut(s) 261, 440
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 2 cut(s) 261, 440
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 8, 229, 409
BstF5I GGATG 3 cut(s) 175, 271, 356
BstHHI GCGC 1 cut(s) 217
BstMWI GCNNNNNNNGC 6 cut(s) 75, 201, 237, 240, 288, 342
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 3 cut(s) 10, 165, 178
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 224, 227
BstXI CCANNNNNNTGG 1 cut(s) 18
BsuRI GGCC 2 cut(s) 10, 165
BtsCI GGATG 3 cut(s) 175, 271, 356
BtsIMutI CAGTG 2 cut(s) 159, 283
Cac8I GCNNGC 3 cut(s) 8, 229, 409
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 246
Csp6I GTAC 3 cut(s) 190, 459, 467
CspCI CAANNNNNGTGG 2 cut(s) 436, 471
CviAII CATG 1 cut(s) 33
CviJI RGCY 7 cut(s) 10, 85, 165, 231, 240, 294, 336
CviKI_1 RGCY 7 cut(s) 10, 85, 165, 231, 240, 294, 336
CviQI GTAC 3 cut(s) 190, 459, 467
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
EciI GGCGGA 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 261, 440
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 2 cut(s) 261, 440
ErhI CCWWGG 2 cut(s) 261, 440
FaeI CATG 1 cut(s) 36
FaiI YATR 4 cut(s) 34, 111, 219, 297
FaqI GGGAC 3 cut(s) 74, 162, 458
FatI CATG 1 cut(s) 32
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 4 cut(s) 213, 232, 241, 292
FokI GGATG 3 cut(s) 182, 278, 363
Fsp4HI GCNGC 4 cut(s) 213, 232, 241, 292
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 216
GluI GCNGC 4 cut(s) 213, 232, 241, 292
GsuI CTGGAG 1 cut(s) 220
HaeIII GGCC 2 cut(s) 10, 165
HapII CCGG 4 cut(s) 167, 180, 348, 360
HgaI GACGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 217
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 3 cut(s) 62, 153, 269
HpaII CCGG 4 cut(s) 167, 180, 348, 360
HphI GGTGA 2 cut(s) 148, 194
Hpy188I TCNGA 2 cut(s) 152, 428
Hpy188III TCNNGA 2 cut(s) 348, 360
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 6 cut(s) 36, 195, 212, 375, 390, 432
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 201, 237, 240, 288, 342
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 1 cut(s) 215
Kpn2I TCCGGA 2 cut(s) 347, 359
LmnI GCTCC 5 cut(s) 82, 239, 321, 350, 442
Lsp1109I GCAGC 2 cut(s) 224, 227
LweI GCATC 1 cut(s) 419
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 182
MbiI CCGCTC 2 cut(s) 234, 324
MboII GAAGA 2 cut(s) 138, 264
MfeI CAATTG 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 1 cut(s) 205
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 7 cut(s) 51, 66, 122, 128, 278, 292, 299
MroI TCCGGA 2 cut(s) 347, 359
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 4 cut(s) 167, 180, 348, 360
MspR9I CCNGG 3 cut(s) 12, 167, 180
MunI CAATTG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 6 cut(s) 75, 201, 237, 240, 288, 342
NciI CCSGG 2 cut(s) 167, 180
NheI GCTAGC 1 cut(s) 407
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 153, 269
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 4 cut(s) 214, 233, 242, 293
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 3 cut(s) 191, 460, 468
RsaNI GTAC 3 cut(s) 190, 459, 467
SatI GCNGC 4 cut(s) 213, 232, 241, 292
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 3 cut(s) 12, 167, 180
SduI GDGCHC 1 cut(s) 399
SetI ASST 8 cut(s) 32, 77, 133, 139, 242, 289, 338, 383
SfaNI GCATC 1 cut(s) 419
SfcI CTRYAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 205
SsiI CCGC 5 cut(s) 78, 232, 282, 291, 324
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 3 cut(s) 10, 165, 178
StyI CCWWGG 2 cut(s) 261, 440
TaaI ACNGT 1 cut(s) 26
TasI AATT 1 cut(s) 205
TatI WGTACW 1 cut(s) 466
TauI GCSGC 2 cut(s) 234, 294
TfiI GAWTC 2 cut(s) 153, 269
TscAI CASTG 2 cut(s) 166, 283
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 212, 240
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 135, 282
TspGWI ACGGA 2 cut(s) 164, 431
TspRI CASTG 2 cut(s) 166, 283
Van91I CCANNNNNTGG 1 cut(s) 92
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.