Rh6DG391700

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006028
Physical Location & Seq
Reverse (-)
58409681 .. 58411104
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG391700.1

Sequence Viewer

Length: 531 bp
ATGAATAGGCCAGGAGATTGGAACTGCAGGTCATGCAACCATCTCAACTTCCAAAGGAGGGACTCATGCCAGAGGTGTGGGGAGCCAAGGCCCGGGGAGAGAGGTGGTGAATTTGGAAGCTTTGGTGGCGGAAGAGGTGGAGGTGTTGGTGGTTCGTTTGGGTTCACTACCGGCCCGGATGTCAGGCCTGGTGACTGGTACTGCAACGTGGGAAACTGTGGAGCTCATAACTTTGCCAGCCGCTCTAGCTGCTTCAAGTGTGGTGCGTCCAAGGACGAGTCCTCTAGTGGCGGTGGTGGCTTTGACGGTGACATGCCTAGGTCACTTAGAGGCGGTTTTGGATTTGGCGGCAGTGGCAGTGGTAGTGGTGGCAGCTCTGGTCGCTCTGGATGGAAATCCGGGGACTGGATTTGCACAAGGTTAGGGTGCAATGAGCACAACTTCGCAAGCAGGACGGAATGTTTCAGATGCAATGCTCCAAGGGAATCTAGTACCGGCAAGTCTCCATATCATTATATCAATTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

176

Amino Acids

18.53

Weight (kDa)

8.79

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 132 - 162 1.9e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 5 cut(s) 129, 241, 291, 333, 348
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 2 cut(s) 200, 493
AfiI CCNNNNNNNGG 3 cut(s) 58, 92, 405
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 2 cut(s) 10, 187
AluBI AGCT 4 cut(s) 120, 224, 249, 375
AluI AGCT 4 cut(s) 120, 224, 249, 375
Alw21I GWGCWC 2 cut(s) 226, 438
Alw26I GTCTC 1 cut(s) 507
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 4 cut(s) 8, 89, 172, 185
ApeKI GCWGC 2 cut(s) 249, 372
ApoI RAATTY 1 cut(s) 110
AspA2I CCTAGG 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 90, 173
AsuC2I CCSGG 4 cut(s) 93, 94, 176, 400
AsuHPI GGTGA 3 cut(s) 119, 203, 320
AvaI CYCGRG 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 317
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 2 cut(s) 226, 438
BbvI GCAGC 2 cut(s) 236, 384
BccI CCATC 2 cut(s) 48, 384
BciT130I CCWGG 2 cut(s) 12, 189
BcnI CCSGG 4 cut(s) 93, 94, 176, 400
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 4 cut(s) 246, 285, 318, 489
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 4 cut(s) 241, 250, 349, 373
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 4 cut(s) 242, 251, 350, 374
Bme1390I CCNGG 6 cut(s) 12, 93, 94, 176, 189, 400
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 90, 173
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 6 cut(s) 12, 93, 94, 176, 189, 400
BmsI GCATC 1 cut(s) 458
BpuMI CCSGG 4 cut(s) 93, 94, 176, 400
BsaBI GATNNNNATC 1 cut(s) 394
BsaJI CCNNGG 7 cut(s) 86, 92, 93, 270, 317, 399, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 92, 405
Bse118I RCCGGY 2 cut(s) 170, 494
Bse1I ACTGG 2 cut(s) 200, 410
Bse3DI GCAATG 2 cut(s) 436, 478
Bse8I GATNNNNATC 1 cut(s) 394
BseBI CCWGG 2 cut(s) 12, 189
BseDI CCNNGG 7 cut(s) 86, 92, 93, 270, 317, 399, 479
BseGI GGATG 2 cut(s) 184, 395
BseJI GATNNNNATC 1 cut(s) 394
BseLI CCNNNNNNNGG 3 cut(s) 58, 92, 405
BseMI GCAATG 2 cut(s) 436, 478
BseNI ACTGG 2 cut(s) 200, 410
BseXI GCAGC 2 cut(s) 236, 384
BshFI GGCC 4 cut(s) 10, 91, 174, 187
BsiHKAI GWGCWC 2 cut(s) 226, 438
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 5 cut(s) 93, 171, 176, 399, 495
BslFI GGGAC 2 cut(s) 74, 416
BslI CCNNNNNNNGG 3 cut(s) 58, 92, 405
BsmAI GTCTC 1 cut(s) 507
BsmFI GGGAC 2 cut(s) 74, 416
BsnI GGCC 4 cut(s) 10, 91, 174, 187
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 226, 438
BspACI CCGC 5 cut(s) 129, 241, 291, 333, 348
BspANI GGCC 4 cut(s) 10, 91, 174, 187
BspLI GGNNCC 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 436, 478
BsrFI RCCGGY 2 cut(s) 170, 494
BsrI ACTGG 2 cut(s) 200, 410
BssAI RCCGGY 2 cut(s) 170, 494
BssECI CCNNGG 7 cut(s) 86, 92, 93, 270, 317, 399, 479
BssT1I CCWWGG 4 cut(s) 86, 270, 317, 479
Bst2UI CCWGG 2 cut(s) 12, 189
Bst4CI ACNGT 2 cut(s) 218, 308
Bst6I CTCTTC 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 238, 448
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 2 cut(s) 184, 395
BstMAI GTCTC 1 cut(s) 507
BstMWI GCNNNNNNNGC 7 cut(s) 33, 126, 246, 249, 297, 354, 381
BstNI CCWGG 2 cut(s) 12, 189
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 6 cut(s) 10, 91, 92, 174, 187, 398
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 236, 384
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 4 cut(s) 10, 91, 174, 187
BtsCI GGATG 2 cut(s) 184, 395
BtsI GCAGTG 2 cut(s) 358, 364
BtsIMutI CAGTG 2 cut(s) 358, 364
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 238, 448
Cfr10I RCCGGY 2 cut(s) 170, 494
Cfr13I GGNCC 2 cut(s) 90, 173
Cfr9I CCCGGG 1 cut(s) 92
CseI GACGC 1 cut(s) 255
Csp6I GTAC 2 cut(s) 199, 492
CviAII CATG 3 cut(s) 33, 66, 313
CviQI GTAC 2 cut(s) 199, 492
DdeI CTNAG 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 224
Eco130I CCWWGG 4 cut(s) 86, 270, 317, 479
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 10, 187
EcoT14I CCWWGG 4 cut(s) 86, 270, 317, 479
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 4 cut(s) 86, 270, 317, 479
FaeI CATG 3 cut(s) 36, 69, 316
FaiI YATR 7 cut(s) 34, 67, 228, 314, 508, 516, 529
FaqI GGGAC 2 cut(s) 74, 416
FatI CATG 3 cut(s) 32, 65, 312
Fnu4HI GCNGC 4 cut(s) 241, 250, 349, 373
FokI GGATG 2 cut(s) 191, 402
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 4 cut(s) 241, 250, 349, 373
FspBI CTAG 4 cut(s) 246, 285, 318, 489
GluI GCNGC 4 cut(s) 241, 250, 349, 373
HaeIII GGCC 4 cut(s) 10, 91, 174, 187
HapII CCGG 5 cut(s) 93, 171, 176, 399, 495
HgaI GACGC 1 cut(s) 255
Hin1II CATG 3 cut(s) 36, 69, 316
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 3 cut(s) 62, 278, 485
HpaII CCGG 5 cut(s) 93, 171, 176, 399, 495
HphI GGTGA 3 cut(s) 119, 203, 320
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 467
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 218, 308
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 6 cut(s) 27, 36, 204, 414, 429, 471
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 126, 246, 249, 297, 354, 381
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 36, 69, 316
LmnI GCTCC 3 cut(s) 82, 221, 481
Lsp1109I GCAGC 2 cut(s) 236, 384
LweI GCATC 1 cut(s) 458
MaeI CTAG 4 cut(s) 246, 285, 318, 489
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 191, 308, 321
MbiI CCGCTC 1 cut(s) 243
MboII GAAGA 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 226, 438
MluCI AATT 2 cut(s) 110, 520
MlyI GAGTC 2 cut(s) 56, 287
MnlI CCTC 7 cut(s) 51, 66, 95, 128, 134, 292, 323
MspI CCGG 5 cut(s) 93, 171, 176, 399, 495
MspR9I CCNGG 6 cut(s) 12, 93, 94, 176, 189, 400
MvaI CCWGG 2 cut(s) 12, 189
MwoI GCNNNNNNNGC 7 cut(s) 33, 126, 246, 249, 297, 354, 381
NciI CCSGG 4 cut(s) 93, 94, 176, 400
NlaIII CATG 3 cut(s) 36, 69, 316
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 3 cut(s) 191, 308, 321
NspI RCATGY 1 cut(s) 316
PceI AGGCCT 1 cut(s) 187
PfeI GAWTC 1 cut(s) 485
PkrI GCNGC 4 cut(s) 242, 251, 350, 374
PleI GAGTC 2 cut(s) 56, 286
PpsI GAGTC 2 cut(s) 56, 286
Psp124BI GAGCTC 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 10, 187
PspGI CCWGG 2 cut(s) 10, 187
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 90, 173
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 2 cut(s) 200, 493
RsaNI GTAC 2 cut(s) 199, 492
SacI GAGCTC 1 cut(s) 226
SatI GCNGC 4 cut(s) 241, 250, 349, 373
Sau96I GGNCC 2 cut(s) 90, 173
SchI GAGTC 2 cut(s) 56, 287
ScrFI CCNGG 6 cut(s) 12, 93, 94, 176, 189, 400
SduI GDGCHC 2 cut(s) 226, 438
SfaNI GCATC 1 cut(s) 458
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 94
Sse9I AATT 2 cut(s) 110, 520
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 5 cut(s) 129, 241, 291, 333, 348
SspMI CTAG 4 cut(s) 246, 285, 318, 489
SstI GAGCTC 1 cut(s) 226
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 6 cut(s) 10, 91, 92, 174, 187, 398
StyI CCWWGG 4 cut(s) 86, 270, 317, 479
TaaI ACNGT 2 cut(s) 218, 308
TaiI ACGT 1 cut(s) 210
TasI AATT 2 cut(s) 110, 520
TauI GCSGC 2 cut(s) 243, 351
TfiI GAWTC 1 cut(s) 485
TscAI CASTG 2 cut(s) 358, 364
TseFI GTSAC 3 cut(s) 191, 308, 321
TseI GCWGC 2 cut(s) 249, 372
Tsp45I GTSAC 3 cut(s) 191, 308, 321
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 470
TspMI CCCGGG 1 cut(s) 92
TspRI CASTG 2 cut(s) 358, 364
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 316
XmaI CCCGGG 1 cut(s) 92
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 4 cut(s) 246, 285, 318, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.