Rorug06G0280600

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006028
Physical Location & Seq
Forward (+)
42795316 .. 42795615
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0280600.1

Sequence Viewer

Length: 300 bp
ATGTTCAGTAATGAAACGAGCATCCCAAGTAATTGGTTACGACAAGCAGCGATTCTTGAGTACGAAGCTATTGGAGGGTTTGTGACTCATTGTGGATGGAACTCTTTCCTTGAATCAGTCTGCTGGGGTGCCAATGATCTCTTGGCCGGCGTCTGTGGAGCAGTTTTACGTGAGAAGGTGGTGAGCCAGATATTGGGTTGGGGTGGTGCTCAAAAGTGGTCGACATTTGAGGAGGATAGTGTGAAGAGGGAAGCCATAAAAAAGGCTTTGACTAGAATCATGGGGGGTGGTGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

99

Amino Acids

10.77

Weight (kDa)

5.32

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 193
AccI GTMKAC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 211
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 193
BanI GGYRCC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 90
BfaI CTAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 130
BmsI GCATC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 77
BsaAI YACGTR 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 146
BseGI GGATG 2 cut(s) 21, 101
BseLI CCNNNNNNNGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 59
BseYI CCCAGC 1 cut(s) 123
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 193
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 136
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 148
BstF5I GGATG 2 cut(s) 21, 101
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 2 cut(s) 21, 101
Cac8I GCNNGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 146
CseI GACGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 280
CviJI RGCY 5 cut(s) 68, 146, 186, 254, 266
CviKI_1 RGCY 5 cut(s) 68, 146, 186, 254, 266
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
FaeI CATG 1 cut(s) 283
FaiI YATR 2 cut(s) 257, 281
FatI CATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 8, 108
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 273
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 283
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 4 cut(s) 52, 85, 113, 276
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 169, 287
HpyCH4IV ACGT 1 cut(s) 169
HpySE526I ACGT 1 cut(s) 169
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 283
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 3 cut(s) 109, 160, 200
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 36, 82
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 31
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 4 cut(s) 68, 223, 226, 240
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 104
MspI CCGG 1 cut(s) 147
NaeI GCCGGC 1 cut(s) 148
NdeII GATC 1 cut(s) 136
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 82
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 3 cut(s) 52, 113, 276
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 130
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SalI GTCGAC 1 cut(s) 220
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 1 cut(s) 79
SduI GDGCHC 1 cut(s) 211
SetI ASST 3 cut(s) 70, 172, 180
SfaNI GCATC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 31
SspMI CTAG 1 cut(s) 273
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 221
TasI AATT 1 cut(s) 31
TfiI GAWTC 3 cut(s) 52, 113, 276
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.