AT5G27730

Protein of unknown function (DUF1624)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
9819256 .. 9823250
3995 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27730.2

Sequence Viewer

Length: 1419 bp
ATGGCGGAAATCAAAGTGGAGAGGAGTCACGATCAACATCTCCTTGAACCTAAAGAAGATACTTCTTCTTCTTATACACGGAGGAGCCTCGCCGGAAACAGACCAAGACTTGCTTCTCTCGACATATTCCGCGGCCTCACTGTCGCCTTGATGATTCTCGTTGATGACGCTGGAGGAGACTGGCCAATGATTGCTCATGCTCCGTGGAACGGTTGCAATTTGGCTGATTTCGTTATGCCTTTCTTTTTGTTCATCGTTGGTGTCTCCATTGCTCTCTCCTTAAAGAGGATTTCGAATAAATTTGAAGCTTGTAAGAAGGTTGGTTTTAGAACCTGCAAGCTCCTCTTCTGGGGTCTTCTACTTCAAGGTGGATTTTCTCATGCTCCTGACGAATTAACATACGGAGTTGATGTGACTATGATGAGGTTTTGTGGGATTCTTCAGAGAATAGCTTTATCCTATTTGGTAGTAGCATTGGTCGAGATCTTCACAAAGGACTCACATGAGGAGAATCTGTCAACTGGGAGGTTTTCAATATTCAAGTCATATTATTGGCATTGGATTGTGGCCGCATCAGTTCTCGTGATTTATCTGGCTACACTCTATGGAACGTACGTTCCTGACTGGGAATTTGTTGTCTATGATAAAGATAGCGTTCTGTACGGGAAAATCCTATCGGTATCATGTGGAGTGAGAGGAAAGCTGAACCCTCCTTGCAATGCTGTTGGATATGTTGACAGACAAGTTTTAGGGATCAATCATATGTATCACCATCCTGCGTGGAGACGATCCAAGGCTTGCACCGATGATTCCCCCTATGAGGGAGCTATACGCCAAGATGCACCTTCATGGTGCCGTGCTCCGTTTGAGCCTGAAGGAATCTTAAGCTCCATATCTGCTATTCTTTCTACAATCATCGGAGTCCATTTTGGACATATTATTTTACACTTGAAGGGACATTCAGCGCGGCTAAAACATTGGATCTCCACCGGTCTTGTTCTCCTCGCTCTCGGACTTACTCTGCATTTCACCCACTTGATGCCTCTGAACAAACAACTCTACAGTTTCAGCTACATATGCGTGACCTCCGGTGCAGCAGCGCTCGTCTTCTCTTCGTTGTATTCTCTGGTCGATATATTGGAGTGGAAACACATGTTTCTGCCTCTAAAATGGATAGGCATGAACGCAATGTTGGTGTACGTGATGGGAGCTGAAGGCATTTTGGCTGCTTTCTTCAATGGTTGGTACTATCGCCACCCGCACAATACACTGATAAATTGGATTCGGGAGCATGTTTTTATCCGAGTTTGGCATTCAAGAAGAGTTGGTGTGCTAATGTATGTCATTTTCGCGGAGATTCTCTTCTGGGGTTTGGTCACTGGTGTGTTTCACAGATTCAAGATCTATTGGAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

53.75

Weight (kDa)

8.98

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 852
AccII CGCG 3 cut(s) 132, 967, 1352
AciI CCGC 7 cut(s) 5, 130, 132, 570, 967, 1259, 1352
AclWI GGATC 3 cut(s) 761, 783, 989
AcoI YGGCCR 2 cut(s) 182, 567
AcsI RAATTY 2 cut(s) 299, 629
AcuI CTGAAG 3 cut(s) 425, 894, 1233
AfaI GTAC 4 cut(s) 614, 662, 1199, 1247
AfeI AGCGCT 1 cut(s) 1101
AfiI CCNNNNNNNGG 5 cut(s) 209, 285, 349, 820, 821
AflII CTTAAG 1 cut(s) 883
AflIII ACRYGT 1 cut(s) 1152
AgeI ACCGGT 1 cut(s) 989
AgsI TTSAA 9 cut(s) 47, 305, 365, 534, 541, 952, 1237, 1317, 1399
AjuI GAANNNNNNNTTGG 4 cut(s) 97, 129, 1175, 1207
AleI CACNNNNGTG 1 cut(s) 1382
AloI GAACNNNNNNTCC 4 cut(s) 600, 601, 632, 633
AluBI AGCT 8 cut(s) 308, 340, 452, 703, 827, 888, 1071, 1211
AluI AGCT 8 cut(s) 308, 340, 452, 703, 827, 888, 1071, 1211
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 3 cut(s) 171, 268, 778
AlwI GGATC 3 cut(s) 761, 783, 989
Aor51HI AGCGCT 1 cut(s) 1101
AoxI GGCC 3 cut(s) 133, 182, 567
ApeKI GCWGC 3 cut(s) 1094, 1097, 1226
ApoI RAATTY 2 cut(s) 299, 629
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AsiGI ACCGGT 1 cut(s) 989
AspLEI GCGC 2 cut(s) 967, 1102
AsuHPI GGTGA 2 cut(s) 761, 1021
AsuII TTCGAA 1 cut(s) 293
BalI TGGCCA 1 cut(s) 184
BanI GGYRCC 1 cut(s) 852
BauI CACGAG 1 cut(s) 581
BbsI GAAGAC 2 cut(s) 347, 1099
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 3 cut(s) 1106, 1109, 1213
BccI CCATC 2 cut(s) 780, 1198
BceAI ACGGC 1 cut(s) 840
BcoDI GTCTC 3 cut(s) 171, 268, 778
BfmI CTRYAG 1 cut(s) 1060
BfoI RGCGCY 1 cut(s) 1103
BfrI CTTAAG 1 cut(s) 883
BfuAI ACCTGC 1 cut(s) 341
BglII AGATCT 2 cut(s) 483, 1401
BisI GCNGC 6 cut(s) 133, 570, 968, 1095, 1098, 1227
BlsI GCNGC 6 cut(s) 134, 571, 969, 1096, 1099, 1228
BmiI GGNNCC 2 cut(s) 86, 854
BmrI ACTGGG 2 cut(s) 531, 634
BmsI GCATC 3 cut(s) 581, 829, 1029
BmuI ACTGGG 2 cut(s) 531, 634
BpiI GAAGAC 2 cut(s) 347, 1099
BpmI CTGGAG 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 1201
BsaBI GATNNNNATC 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 130, 203, 792
BsaWI WCCGGW 2 cut(s) 989, 1088
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 500, 530
Bsc4I CCNNNNNNNGG 5 cut(s) 209, 285, 349, 820, 821
Bse118I RCCGGY 1 cut(s) 989
Bse1I ACTGG 4 cut(s) 185, 526, 629, 1384
Bse3DI GCAATG 3 cut(s) 267, 724, 1194
Bse8I GATNNNNATC 1 cut(s) 36
BseDI CCNNGG 3 cut(s) 130, 203, 792
BseGI GGATG 1 cut(s) 772
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 5 cut(s) 209, 285, 349, 820, 821
BseMI GCAATG 3 cut(s) 267, 724, 1194
BseNI ACTGG 4 cut(s) 185, 526, 629, 1384
BseRI GAGGAG 6 cut(s) 37, 97, 189, 332, 521, 992
BseXI GCAGC 3 cut(s) 1106, 1109, 1213
BsgI GTGCAG 1 cut(s) 1113
Bsh1236I CGCG 3 cut(s) 132, 967, 1352
BshFI GGCC 3 cut(s) 135, 184, 569
BshNI GGYRCC 1 cut(s) 852
BshTI ACCGGT 1 cut(s) 989
BsiHKAI GWGCWC 1 cut(s) 862
BsiSI CCGG 3 cut(s) 93, 990, 1089
BsiWI CGTACG 1 cut(s) 612
BslFI GGGAC 1 cut(s) 969
BslI CCNNNNNNNGG 5 cut(s) 209, 285, 349, 820, 821
BsmAI GTCTC 3 cut(s) 171, 268, 778
BsmBI CGTCTC 1 cut(s) 778
BsmFI GGGAC 1 cut(s) 969
BsmI GAATGC 1 cut(s) 1312
BsnI GGCC 3 cut(s) 135, 184, 569
Bsp119I TTCGAA 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 862
Bsp143I GATC 6 cut(s) 31, 483, 753, 788, 981, 1401
BspACI CCGC 7 cut(s) 5, 130, 132, 570, 967, 1259, 1352
BspANI GGCC 3 cut(s) 135, 184, 569
BspFNI CGCG 3 cut(s) 132, 967, 1352
BspLI GGNNCC 2 cut(s) 86, 854
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 3 cut(s) 761, 783, 989
BspT104I TTCGAA 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 852
BspTI CTTAAG 1 cut(s) 883
BsrDI GCAATG 3 cut(s) 267, 724, 1194
BsrFI RCCGGY 1 cut(s) 989
BsrI ACTGG 4 cut(s) 185, 526, 629, 1384
BssAI RCCGGY 1 cut(s) 989
BssECI CCNNGG 3 cut(s) 130, 203, 792
BssMI GATC 6 cut(s) 31, 483, 753, 788, 981, 1401
BssSI CACGAG 1 cut(s) 581
BssT1I CCWWGG 1 cut(s) 792
Bst2BI CACGAG 1 cut(s) 581
Bst4CI ACNGT 3 cut(s) 142, 212, 1064
Bst6I CTCTTC 4 cut(s) 350, 1117, 1315, 1367
BstAFI CTTAAG 1 cut(s) 883
BstBAI YACGTR 1 cut(s) 1201
BstBI TTCGAA 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 338, 799
BstDSI CCRYGG 2 cut(s) 130, 203
BstENI CCTNNNNNAGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 772
BstFNI CGCG 3 cut(s) 132, 967, 1352
BstH2I RGCGCY 1 cut(s) 1103
BstHHI GCGC 2 cut(s) 967, 1102
BstKTI GATC 6 cut(s) 34, 486, 756, 791, 984, 1404
BstMAI GTCTC 3 cut(s) 171, 268, 778
BstMBI GATC 6 cut(s) 31, 483, 753, 788, 981, 1401
BstMWI GCNNNNNNNGC 1 cut(s) 1077
BstNSI RCATGY 2 cut(s) 1156, 1295
BstSFI CTRYAG 1 cut(s) 1060
BstUI CGCG 3 cut(s) 132, 967, 1352
BstV1I GCAGC 3 cut(s) 1106, 1109, 1213
BstV2I GAAGAC 2 cut(s) 347, 1099
BstX2I RGATCY 3 cut(s) 483, 981, 1401
BstYI RGATCY 3 cut(s) 483, 981, 1401
BsuRI GGCC 3 cut(s) 135, 184, 569
BtgI CCRYGG 2 cut(s) 130, 203
BtsCI GGATG 1 cut(s) 772
BtsIMutI CAGTG 3 cut(s) 138, 1268, 1377
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 338, 799
CfoI GCGC 2 cut(s) 967, 1102
Cfr10I RCCGGY 1 cut(s) 989
Cfr42I CCGCGG 1 cut(s) 133
CseI GACGC 1 cut(s) 176
Csp6I GTAC 4 cut(s) 613, 661, 1198, 1246
CspAI ACCGGT 1 cut(s) 989
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
CviAII CATG 8 cut(s) 197, 380, 503, 684, 849, 1153, 1180, 1292
CviQI GTAC 4 cut(s) 613, 661, 1198, 1246
DpnI GATC 6 cut(s) 33, 485, 755, 790, 983, 1403
DpnII GATC 6 cut(s) 31, 483, 753, 788, 981, 1401
EaeI YGGCCR 2 cut(s) 182, 567
Eam1104I CTCTTC 4 cut(s) 350, 1117, 1315, 1367
EarI CTCTTC 4 cut(s) 350, 1117, 1315, 1367
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 792
Eco47III AGCGCT 1 cut(s) 1101
Eco57I CTGAAG 3 cut(s) 425, 894, 1233
EcoNI CCTNNNNNAGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 792
Esp3I CGTCTC 1 cut(s) 778
FaeI CATG 8 cut(s) 200, 383, 506, 687, 852, 1156, 1183, 1295
FalI AAGNNNNNCTT 4 cut(s) 97, 129, 329, 361
FaqI GGGAC 1 cut(s) 969
FatI CATG 8 cut(s) 196, 379, 502, 683, 848, 1152, 1179, 1291
FauI CCCGC 1 cut(s) 1266
FauNDI CATATG 2 cut(s) 762, 1076
Fnu4HI GCNGC 6 cut(s) 133, 570, 968, 1095, 1098, 1227
FokI GGATG 1 cut(s) 759
Fsp4HI GCNGC 6 cut(s) 133, 570, 968, 1095, 1098, 1227
GlaI GCGC 2 cut(s) 966, 1101
GluI GCNGC 6 cut(s) 133, 570, 968, 1095, 1098, 1227
GsuI CTGGAG 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 1103
HaeIII GGCC 3 cut(s) 135, 184, 569
HapII CCGG 3 cut(s) 93, 990, 1089
HgaI GACGC 1 cut(s) 176
HhaI GCGC 2 cut(s) 967, 1102
Hin1II CATG 8 cut(s) 200, 383, 506, 687, 852, 1156, 1183, 1295
Hin6I GCGC 2 cut(s) 965, 1100
HinP1I GCGC 2 cut(s) 965, 1100
HincII GTYRAC 2 cut(s) 519, 736
HindII GTYRAC 2 cut(s) 519, 736
HindIII AAGCTT 1 cut(s) 306
HpaII CCGG 3 cut(s) 93, 990, 1089
HphI GGTGA 2 cut(s) 761, 1021
Hpy166II GTNNAC 3 cut(s) 519, 736, 1198
Hpy188I TCNGA 5 cut(s) 444, 920, 1013, 1047, 1304
Hpy188III TCNNGA 9 cut(s) 29, 119, 386, 481, 583, 620, 1286, 1317, 1399
Hpy8I GTNNAC 3 cut(s) 519, 736, 1198
HpyAV CCTTC 5 cut(s) 310, 855, 869, 946, 1208
HpyCH4III ACNGT 3 cut(s) 142, 212, 1064
HpyCH4IV ACGT 3 cut(s) 611, 615, 1200
HpyCH4V TGCA 7 cut(s) 216, 336, 717, 801, 842, 1024, 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 1077
HpySE526I ACGT 3 cut(s) 611, 615, 1200
Hsp92II CATG 8 cut(s) 200, 383, 506, 687, 852, 1156, 1183, 1295
HspAI GCGC 2 cut(s) 965, 1100
KspI CCGCGG 1 cut(s) 133
Kzo9I GATC 6 cut(s) 31, 483, 753, 788, 981, 1401
LmnI GCTCC 9 cut(s) 84, 205, 345, 388, 824, 865, 893, 1208, 1288
Lsp1109I GCAGC 3 cut(s) 1106, 1109, 1213
LweI GCATC 3 cut(s) 581, 829, 1029
MaeII ACGT 3 cut(s) 611, 615, 1200
MaeIII GTNAC 4 cut(s) 26, 412, 1081, 1375
MalI GATC 6 cut(s) 33, 485, 755, 790, 983, 1403
MboI GATC 6 cut(s) 31, 483, 753, 788, 981, 1401
MflI RGATCY 3 cut(s) 483, 981, 1401
MhlI GDGCHC 1 cut(s) 862
MlsI TGGCCA 1 cut(s) 184
MluCI AATT 5 cut(s) 217, 299, 392, 629, 1276
MluNI TGGCCA 1 cut(s) 184
MlyI GAGTC 3 cut(s) 34, 491, 930
MmeI TCCRAC 1 cut(s) 706
Mox20I TGGCCA 1 cut(s) 184
MscI TGGCCA 1 cut(s) 184
MseI TTAA 3 cut(s) 281, 395, 884
MslI CAYNNNNRTG 3 cut(s) 847, 1079, 1382
Msp20I TGGCCA 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 883
MspI CCGG 3 cut(s) 93, 990, 1089
Mva1269I GAATGC 1 cut(s) 1312
MvnI CGCG 3 cut(s) 132, 967, 1352
MwoI GCNNNNNNNGC 1 cut(s) 1077
NdeI CATATG 2 cut(s) 762, 1076
NdeII GATC 6 cut(s) 31, 483, 753, 788, 981, 1401
NlaIII CATG 8 cut(s) 200, 383, 506, 687, 852, 1156, 1183, 1295
NlaIV GGNNCC 2 cut(s) 86, 854
NmuCI GTSAC 4 cut(s) 26, 412, 1081, 1375
NspI RCATGY 2 cut(s) 1156, 1295
NspV TTCGAA 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 1382
PciI ACATGT 1 cut(s) 1152
PctI GAATGC 1 cut(s) 1312
PfeI GAWTC 8 cut(s) 154, 436, 511, 809, 879, 1282, 1357, 1395
Pfl23II CGTACG 1 cut(s) 612
PinAI ACCGGT 1 cut(s) 989
PkrI GCNGC 6 cut(s) 134, 571, 969, 1096, 1099, 1228
PleI GAGTC 3 cut(s) 33, 491, 929
PpsI GAGTC 3 cut(s) 33, 491, 929
Ppu21I YACGTR 1 cut(s) 1201
PscI ACATGT 1 cut(s) 1152
PspLI CGTACG 1 cut(s) 612
PspN4I GGNNCC 2 cut(s) 86, 854
PsuI RGATCY 3 cut(s) 483, 981, 1401
RsaI GTAC 4 cut(s) 614, 662, 1199, 1247
RsaNI GTAC 4 cut(s) 613, 661, 1198, 1246
RseI CAYNNNNRTG 3 cut(s) 847, 1079, 1382
SacII CCGCGG 1 cut(s) 133
SaqAI TTAA 3 cut(s) 281, 395, 884
SatI GCNGC 6 cut(s) 133, 570, 968, 1095, 1098, 1227
Sau3AI GATC 6 cut(s) 31, 483, 753, 788, 981, 1401
SchI GAGTC 3 cut(s) 34, 491, 930
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 3 cut(s) 581, 829, 1029
SfcI CTRYAG 1 cut(s) 1060
Sfr303I CCGCGG 1 cut(s) 133
SfuI TTCGAA 1 cut(s) 293
SgrBI CCGCGG 1 cut(s) 133
SmiMI CAYNNNNRTG 3 cut(s) 847, 1079, 1382
SmlI CTYRAG 1 cut(s) 883
SmoI CTYRAG 1 cut(s) 883
Sse9I AATT 5 cut(s) 217, 299, 392, 629, 1276
SsiI CCGC 7 cut(s) 5, 130, 132, 570, 967, 1259, 1352
SspI AATATT 1 cut(s) 537
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 142, 212, 1064
TaiI ACGT 3 cut(s) 614, 618, 1203
TaqI TCGA 4 cut(s) 120, 293, 480, 1131
TasI AATT 5 cut(s) 217, 299, 392, 629, 1276
TauI GCSGC 3 cut(s) 135, 572, 970
TfiI GAWTC 8 cut(s) 154, 436, 511, 809, 879, 1282, 1357, 1395
Tru1I TTAA 3 cut(s) 281, 395, 884
Tru9I TTAA 3 cut(s) 281, 395, 884
TscAI CASTG 3 cut(s) 145, 1275, 1384
TseFI GTSAC 4 cut(s) 26, 412, 1081, 1375
TseI GCWGC 3 cut(s) 1094, 1097, 1226
Tsp45I GTSAC 4 cut(s) 26, 412, 1081, 1375
TspDTI ATGAA 3 cut(s) 241, 837, 1196
TspGWI ACGGA 4 cut(s) 94, 192, 417, 852
TspRI CASTG 3 cut(s) 145, 1275, 1384
Vha464I CTTAAG 1 cut(s) 883
XagI CCTNNNNNAGG 1 cut(s) 283
XapI RAATTY 2 cut(s) 299, 629
XceI RCATGY 2 cut(s) 1156, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.