pycom04g17650

Heparan-alpha-glucosaminide

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
19964658 .. 19968225
3568 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17650.12

Sequence Viewer

Length: 1404 bp
ATGGCAGAAATCAAAGCCGATACGAGCCACCACCAGAGTCTAATCGTGTCAGAACCCGATGTTTCCGACCCCAAGCCATCCAAATCGAAGCGCCTCGCTTCCCTGGACATCTTTCGTGGCCTCACCGTCTCGTTGATGATTCTGGTTGACGATGCTGGTGGAGAGTGGCCAGTGATTGGCCATGCGCCATGGAACGGCTGCAATCTTGCAGACTTTGTGATGCCCTTCTTCCTCTTCATTGTGGGCATGTCCATTGCTCTTTCTCTCAAGAGAATACCGGACCAATTTGTGGCTGTCAAGAAGGTGACTCTTAGAACTCTGAAGCTACTGTTTTGGGGTCTCCTATTACAAGGAGGTTACTCACACGCTCCTGACAAACTAACATATGGTGTTGACGTGAAAGAAATAAGGTGGTGTGGTATTCTCCAGAGAATTGCTCTTGCATATCTGGTTGTGGCACTGATTGAAATTGTATCGAGAGGTGCAGAAACCAAAGATATGGCACCCGGCACGTTCTCCATATTCAAGTTGTACTATTGGCACTGGCTTGTAGCTGCATGTGTTCTCGTTATTTACTTTGCTGTGATTTATGGGGCATATGTTCCTGATTGGCAATTTACTGTCCAGGACAGAGAGAGAACCGATTATGGGAAAAGTTACACCGTAACTTGTGGCGTGAGAGGAAAACTAGATCCTCCGTGTAATGCAGTAGGATATATTGACAGAGAAGTGTTGGGAATCAGTCACATGTATCAGCGTCCGGCTTGGAAACGATCCAAAGCTTGCACTGAGAATTCCCCATATGCAGGACTATTCCGAAATGATGCCCCATCATGGTGCCGTGGTCCTTTTGAACCTGAAGGAATTGTAAGCTCTATATCTGCAATTCTCTCTGCGATTATTGGAGTGCATTTCGGACATGTGCTTATACATATGCAGGGTCATCCGGCCAGACTGAAGCATTGGGTTCCGACAGGATGTGCTCTCCTCGCCCTAGGAATTATTCTTCATTTCAGTCATGCAATTCCTTCAAATAAACAGCTGTACACATTTAGCTACGTATGCATAACATCGGGAGCGGCAGCCTTGGTGTTTTCAGCCTTCTACCTTATGGTTGATATCTGGAGCATAAGGTACCTGTTCCTGCCGCTGGAATGGATCGGCATGAATGCTATGCTTGTCTATGTCATGGCAGCTGAAGGCATCCTCGCAGGATTCGTTAACGGGTGGTATTACAAGGACCCCCATAACACGCTTGTGTACTGGATTCAAAAGCACGTCTTCGTCGGGGTTTGGCATTCGAGGAGAGTAGGCATTCTACTCTACGTCCTCTTTGCGGAGATCTTGTTTTGGGGCATTGTCGCCGGCGTTTTGCATCGGCTGGGCATATATTGGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

52.53

Weight (kDa)

8.88

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1134
AccB1I GGYRCC 3 cut(s) 502, 837, 1134
AccB7I CCANNNNNTGG 2 cut(s) 176, 289
AccBSI CCGCTC 1 cut(s) 1079
AciI CCGC 3 cut(s) 1079, 1148, 1337
AclWI GGATC 3 cut(s) 686, 768, 1166
AcoI YGGCCR 3 cut(s) 167, 178, 948
AcsI RAATTY 1 cut(s) 793
AcuI CTGAAG 4 cut(s) 341, 879, 977, 1218
AfaI GTAC 4 cut(s) 533, 1046, 1136, 1262
AfiI CCNNNNNNNGG 8 cut(s) 176, 194, 289, 648, 806, 834, 1150, 1336
AflIII ACRYGT 2 cut(s) 747, 919
AgsI TTSAA 5 cut(s) 467, 526, 854, 1032, 1271
AjiI CACGTC 2 cut(s) 397, 1279
AjnI CCWGG 2 cut(s) 102, 624
AleI CACNNNNGTG 1 cut(s) 1256
AluBI AGCT 8 cut(s) 325, 554, 782, 873, 1042, 1056, 1196, 1399
AluI AGCT 8 cut(s) 325, 554, 782, 873, 1042, 1056, 1196, 1399
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 2 cut(s) 133, 344
AlwI GGATC 3 cut(s) 686, 768, 1166
AoxI GGCC 4 cut(s) 118, 167, 178, 948
ApeKI GCWGC 4 cut(s) 198, 554, 1082, 1193
ApoI RAATTY 1 cut(s) 793
Asp718I GGTACC 1 cut(s) 1134
AspA2I CCTAGG 1 cut(s) 994
AspLEI GCGC 2 cut(s) 93, 187
AspS9I GGNCC 3 cut(s) 280, 845, 1240
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 2 cut(s) 115, 316
AvaII GGWCC 3 cut(s) 280, 845, 1240
AvrII CCTAGG 1 cut(s) 994
BalI TGGCCA 2 cut(s) 169, 180
BanI GGYRCC 3 cut(s) 502, 837, 1134
BbsI GAAGAC 1 cut(s) 1273
Bbv12I GWGCWC 1 cut(s) 985
BbvI GCAGC 4 cut(s) 185, 541, 1094, 1205
BccI CCATC 2 cut(s) 85, 838
BceAI ACGGC 2 cut(s) 211, 825
BciT130I CCWGG 2 cut(s) 104, 626
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 2 cut(s) 133, 344
BfaI CTAG 2 cut(s) 689, 995
BfoI RGCGCY 1 cut(s) 94
BglII AGATCT 1 cut(s) 1341
BisI GCNGC 6 cut(s) 199, 555, 1080, 1083, 1148, 1194
BlnI CCTAGG 1 cut(s) 994
BlsI GCNGC 6 cut(s) 200, 556, 1081, 1084, 1149, 1195
Bme1390I CCNGG 3 cut(s) 104, 507, 626
Bme18I GGWCC 3 cut(s) 280, 845, 1240
BmgBI CACGTC 2 cut(s) 397, 1279
BmgT120I GGNCC 3 cut(s) 280, 845, 1240
BmiI GGNNCC 5 cut(s) 504, 839, 969, 1136, 1242
BmrFI CCNGG 3 cut(s) 104, 507, 626
BmsI GCATC 5 cut(s) 142, 210, 814, 1212, 1384
BpiI GAAGAC 1 cut(s) 1273
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BpmI CTGGAG 2 cut(s) 410, 1144
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 507
BsaAI YACGTR 1 cut(s) 1060
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 5 cut(s) 102, 188, 841, 994, 1086
BsaWI WCCGGW 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 1331, 1361
Bsc4I CCNNNNNNNGG 8 cut(s) 176, 194, 289, 648, 806, 834, 1150, 1336
Bse118I RCCGGY 1 cut(s) 1364
Bse1I ACTGG 3 cut(s) 170, 548, 1268
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 2 cut(s) 104, 626
BseDI CCNNGG 5 cut(s) 102, 188, 841, 994, 1086
BseGI GGATG 4 cut(s) 77, 943, 983, 1203
BseLI CCNNNNNNNGG 8 cut(s) 176, 194, 289, 648, 806, 834, 1150, 1336
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 780
BseNI ACTGG 3 cut(s) 170, 548, 1268
BseRI GAGGAG 2 cut(s) 977, 1318
BseXI GCAGC 4 cut(s) 185, 541, 1094, 1205
BseYI CCCAGC 1 cut(s) 1381
BsgI GTGCAG 1 cut(s) 504
BshFI GGCC 4 cut(s) 120, 169, 180, 950
BshNI GGYRCC 3 cut(s) 502, 837, 1134
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 5 cut(s) 278, 507, 761, 947, 1365
BslI CCNNNNNNNGG 8 cut(s) 176, 194, 289, 648, 806, 834, 1150, 1336
BsmAI GTCTC 2 cut(s) 133, 344
BsmBI CGTCTC 1 cut(s) 133
BsmI GAATGC 3 cut(s) 1174, 1297, 1314
BsnI GGCC 4 cut(s) 120, 169, 180, 950
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 985
Bsp1407I TGTACA 1 cut(s) 1044
Bsp143I GATC 4 cut(s) 691, 773, 1158, 1341
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 3 cut(s) 1079, 1148, 1337
BspANI GGCC 4 cut(s) 120, 169, 180, 950
BspCNI CTCAG 1 cut(s) 781
BspLI GGNNCC 5 cut(s) 504, 839, 969, 1136, 1242
BspPI GGATC 3 cut(s) 686, 768, 1166
BspT107I GGYRCC 3 cut(s) 502, 837, 1134
BspTNI GGTCTC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 1079
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 1364
BsrGI TGTACA 1 cut(s) 1044
BsrI ACTGG 3 cut(s) 170, 548, 1268
BssAI RCCGGY 1 cut(s) 1364
BssECI CCNNGG 5 cut(s) 102, 188, 841, 994, 1086
BssMI GATC 4 cut(s) 691, 773, 1158, 1341
BssT1I CCWWGG 3 cut(s) 188, 994, 1086
Bst2UI CCWGG 2 cut(s) 104, 626
Bst4CI ACNGT 4 cut(s) 127, 330, 622, 664
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 1044
BstBAI YACGTR 1 cut(s) 1060
BstC8I GCNNGC 2 cut(s) 784, 1366
BstDEI CTNAG 2 cut(s) 311, 789
BstDSI CCRYGG 2 cut(s) 188, 841
BstF5I GGATG 4 cut(s) 77, 943, 983, 1203
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 2 cut(s) 93, 187
BstKTI GATC 4 cut(s) 694, 776, 1161, 1344
BstMAI GTCTC 2 cut(s) 133, 344
BstMBI GATC 4 cut(s) 691, 773, 1158, 1341
BstMWI GCNNNNNNNGC 2 cut(s) 989, 1062
BstNI CCWGG 2 cut(s) 104, 626
BstNSI RCATGY 4 cut(s) 250, 561, 751, 923
BstSCI CCNGG 3 cut(s) 102, 505, 624
BstSNI TACGTA 1 cut(s) 1060
BstV1I GCAGC 4 cut(s) 185, 541, 1094, 1205
BstV2I GAAGAC 1 cut(s) 1273
BstX2I RGATCY 2 cut(s) 691, 1341
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 2 cut(s) 691, 1341
BsuRI GGCC 4 cut(s) 120, 169, 180, 950
BtgI CCRYGG 2 cut(s) 188, 841
BtrI CACGTC 2 cut(s) 397, 1279
BtsCI GGATG 4 cut(s) 77, 943, 983, 1203
BtsIMutI CAGTG 4 cut(s) 177, 458, 541, 786
Cac8I GCNNGC 2 cut(s) 784, 1366
CfoI GCGC 2 cut(s) 93, 187
Cfr10I RCCGGY 1 cut(s) 1364
Cfr13I GGNCC 3 cut(s) 280, 845, 1240
CseI GACGC 1 cut(s) 746
Csp6I GTAC 4 cut(s) 532, 1045, 1135, 1261
CviQI GTAC 4 cut(s) 532, 1045, 1135, 1261
DdeI CTNAG 2 cut(s) 311, 789
DpnI GATC 4 cut(s) 693, 775, 1160, 1343
DpnII GATC 4 cut(s) 691, 773, 1158, 1341
EaeI YGGCCR 3 cut(s) 167, 178, 948
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco105I TACGTA 1 cut(s) 1060
Eco130I CCWWGG 3 cut(s) 188, 994, 1086
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 1120
Eco47I GGWCC 3 cut(s) 280, 845, 1240
Eco57I CTGAAG 4 cut(s) 341, 879, 977, 1218
EcoO109I RGGNCCY 1 cut(s) 1240
EcoRI GAATTC 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 102, 624
EcoRV GATATC 1 cut(s) 1120
EcoT14I CCWWGG 3 cut(s) 188, 994, 1086
EcoT22I ATGCAT 1 cut(s) 1067
ErhI CCWWGG 3 cut(s) 188, 994, 1086
Esp3I CGTCTC 1 cut(s) 133
FalI AAGNNNNNCTT 2 cut(s) 1265, 1297
FauNDI CATATG 4 cut(s) 385, 598, 802, 933
Fnu4HI GCNGC 6 cut(s) 199, 555, 1080, 1083, 1148, 1194
FokI GGATG 4 cut(s) 64, 930, 990, 1190
Fsp4HI GCNGC 6 cut(s) 199, 555, 1080, 1083, 1148, 1194
FspBI CTAG 2 cut(s) 689, 995
GlaI GCGC 2 cut(s) 92, 186
GluI GCNGC 6 cut(s) 199, 555, 1080, 1083, 1148, 1194
GsaI CCCAGC 1 cut(s) 1385
GsuI CTGGAG 2 cut(s) 410, 1144
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 4 cut(s) 120, 169, 180, 950
HapII CCGG 5 cut(s) 278, 507, 761, 947, 1365
HgaI GACGC 1 cut(s) 746
HhaI GCGC 2 cut(s) 93, 187
Hin6I GCGC 2 cut(s) 91, 185
HinP1I GCGC 2 cut(s) 91, 185
HincII GTYRAC 3 cut(s) 148, 394, 1222
HindII GTYRAC 3 cut(s) 148, 394, 1222
HindIII AAGCTT 2 cut(s) 780, 1397
HinfI GANTC 6 cut(s) 37, 139, 307, 738, 1215, 1267
HpaI GTTAAC 1 cut(s) 1222
HpaII CCGG 5 cut(s) 278, 507, 761, 947, 1365
HphI GGTGA 2 cut(s) 115, 316
Hpy166II GTNNAC 5 cut(s) 148, 394, 1047, 1222, 1261
Hpy188I TCNGA 6 cut(s) 52, 67, 321, 818, 917, 972
Hpy188III TCNNGA 8 cut(s) 268, 298, 371, 427, 477, 605, 1074, 1123
Hpy8I GTNNAC 5 cut(s) 148, 394, 1047, 1222, 1261
Hpy99I CGWCG 1 cut(s) 1289
HpyAV CCTTC 6 cut(s) 235, 295, 854, 1038, 1111, 1193
HpyCH4III ACNGT 4 cut(s) 127, 330, 622, 664
HpyCH4IV ACGT 5 cut(s) 396, 512, 1059, 1278, 1326
HpyF10VI GCNNNNNNNGC 2 cut(s) 989, 1062
HpyF3I CTNAG 2 cut(s) 311, 789
HpySE526I ACGT 5 cut(s) 396, 512, 1059, 1278, 1326
HspAI GCGC 2 cut(s) 91, 185
KpnI GGTACC 1 cut(s) 1138
KroI GCCGGC 1 cut(s) 1364
KroNI GCCGGC 1 cut(s) 1366
KspAI GTTAAC 1 cut(s) 1222
Kzo9I GATC 4 cut(s) 691, 773, 1158, 1341
LmnI GCTCC 3 cut(s) 373, 1076, 1125
Lsp1109I GCAGC 4 cut(s) 185, 541, 1094, 1205
LweI GCATC 5 cut(s) 142, 210, 814, 1212, 1384
MaeI CTAG 2 cut(s) 689, 995
MaeII ACGT 5 cut(s) 396, 512, 1059, 1278, 1326
MaeIII GTNAC 5 cut(s) 304, 356, 656, 664, 743
MalI GATC 4 cut(s) 693, 775, 1160, 1343
MbiI CCGCTC 1 cut(s) 1079
MboI GATC 4 cut(s) 691, 773, 1158, 1341
MboII GAAGA 4 cut(s) 220, 226, 998, 1273
MflI RGATCY 2 cut(s) 691, 1341
MhlI GDGCHC 1 cut(s) 985
MlsI TGGCCA 2 cut(s) 169, 180
MluCI AATT 9 cut(s) 284, 432, 468, 614, 793, 864, 885, 999, 1023
MluNI TGGCCA 2 cut(s) 169, 180
MlyI GAGTC 2 cut(s) 46, 301
MmeI TCCRAC 2 cut(s) 90, 995
Mox20I TGGCCA 2 cut(s) 169, 180
Mph1103I ATGCAT 1 cut(s) 1067
MreI CGCCGGCG 1 cut(s) 1364
MroNI GCCGGC 1 cut(s) 1364
MscI TGGCCA 2 cut(s) 169, 180
MseI TTAA 1 cut(s) 1221
MslI CAYNNNNRTG 2 cut(s) 835, 1256
Msp20I TGGCCA 2 cut(s) 169, 180
MspA1I CMGCKG 3 cut(s) 1042, 1150, 1196
MspI CCGG 5 cut(s) 278, 507, 761, 947, 1365
MspR9I CCNGG 3 cut(s) 104, 507, 626
Mva1269I GAATGC 3 cut(s) 1174, 1297, 1314
MvaI CCWGG 2 cut(s) 104, 626
MwoI GCNNNNNNNGC 2 cut(s) 989, 1062
NaeI GCCGGC 1 cut(s) 1366
NciI CCSGG 1 cut(s) 507
NcoI CCATGG 1 cut(s) 188
NdeI CATATG 4 cut(s) 385, 598, 802, 933
NdeII GATC 4 cut(s) 691, 773, 1158, 1341
NgoMIV GCCGGC 1 cut(s) 1364
NlaIV GGNNCC 5 cut(s) 504, 839, 969, 1136, 1242
NmuCI GTSAC 2 cut(s) 304, 743
NsiI ATGCAT 1 cut(s) 1067
NspI RCATGY 4 cut(s) 250, 561, 751, 923
OliI CACNNNNGTG 1 cut(s) 1256
PciI ACATGT 2 cut(s) 747, 919
PcsI WCGNNNNNNNCGW 1 cut(s) 1215
PctI GAATGC 3 cut(s) 1174, 1297, 1314
PdiI GCCGGC 1 cut(s) 1366
PfeI GAWTC 4 cut(s) 139, 738, 1215, 1267
PflMI CCANNNNNTGG 2 cut(s) 176, 289
PfoI TCCNGGA 1 cut(s) 624
PkrI GCNGC 6 cut(s) 200, 556, 1081, 1084, 1149, 1195
PleI GAGTC 2 cut(s) 45, 301
PpsI GAGTC 2 cut(s) 45, 301
Ppu21I YACGTR 1 cut(s) 1060
PpuMI RGGWCCY 1 cut(s) 1240
PscI ACATGT 2 cut(s) 747, 919
Psp5II RGGWCCY 1 cut(s) 1240
Psp6I CCWGG 2 cut(s) 102, 624
PspFI CCCAGC 1 cut(s) 1381
PspGI CCWGG 2 cut(s) 102, 624
PspN4I GGNNCC 5 cut(s) 504, 839, 969, 1136, 1242
PspPI GGNCC 3 cut(s) 280, 845, 1240
PspPPI RGGWCCY 1 cut(s) 1240
PsuI RGATCY 2 cut(s) 691, 1341
PvuII CAGCTG 2 cut(s) 1042, 1196
RsaI GTAC 4 cut(s) 533, 1046, 1136, 1262
RsaNI GTAC 4 cut(s) 532, 1045, 1135, 1261
RseI CAYNNNNRTG 2 cut(s) 835, 1256
SaqAI TTAA 1 cut(s) 1221
SatI GCNGC 6 cut(s) 199, 555, 1080, 1083, 1148, 1194
Sau3AI GATC 4 cut(s) 691, 773, 1158, 1341
Sau96I GGNCC 3 cut(s) 280, 845, 1240
SchI GAGTC 2 cut(s) 46, 301
ScrFI CCNGG 3 cut(s) 104, 507, 626
SduI GDGCHC 1 cut(s) 985
SfaNI GCATC 5 cut(s) 142, 210, 814, 1212, 1384
SgrAI CRCCGGYG 1 cut(s) 1364
SinI GGWCC 3 cut(s) 280, 845, 1240
SmiMI CAYNNNNRTG 2 cut(s) 835, 1256
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SnaBI TACGTA 1 cut(s) 1060
Sse9I AATT 9 cut(s) 284, 432, 468, 614, 793, 864, 885, 999, 1023
SsiI CCGC 3 cut(s) 1079, 1148, 1337
SspMI CTAG 2 cut(s) 689, 995
StyD4I CCNGG 3 cut(s) 102, 505, 624
StyI CCWWGG 3 cut(s) 188, 994, 1086
TaaI ACNGT 4 cut(s) 127, 330, 622, 664
TaiI ACGT 5 cut(s) 399, 515, 1062, 1281, 1329
TaqI TCGA 3 cut(s) 86, 476, 1301
TasI AATT 9 cut(s) 284, 432, 468, 614, 793, 864, 885, 999, 1023
TatI WGTACW 3 cut(s) 531, 1044, 1260
TauI GCSGC 2 cut(s) 1082, 1150
TfiI GAWTC 4 cut(s) 139, 738, 1215, 1267
Tru1I TTAA 1 cut(s) 1221
Tru9I TTAA 1 cut(s) 1221
TscAI CASTG 4 cut(s) 177, 465, 548, 793
TseFI GTSAC 2 cut(s) 304, 743
TseI GCWGC 4 cut(s) 198, 554, 1082, 1193
Tsp45I GTSAC 2 cut(s) 304, 743
TspDTI ATGAA 3 cut(s) 226, 998, 1181
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 4 cut(s) 177, 465, 548, 793
Van91I CCANNNNNTGG 2 cut(s) 176, 289
VpaK11BI GGWCC 3 cut(s) 280, 845, 1240
XapI RAATTY 1 cut(s) 793
XceI RCATGY 4 cut(s) 250, 561, 751, 923
XmaJI CCTAGG 1 cut(s) 994
XspI CTAG 2 cut(s) 689, 995
Zsp2I ATGCAT 1 cut(s) 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.