Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003888

Physical Location & Seq

Genomic Coordinates Forward (+)

5370706 .. 5374500

Gene Structure 3795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42268

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGCCGAAATCAAAGCCGAACCGGCTCTCCAGCACCACCTCATCGTATCGGAACCTGATATTTCCGACCAGAAGCCTTTAAAACCGAAGCGTGTAGCTTCCCTCGACATCTTCCGAGGCCTCACTGTCTCTTTGATGATTTTGGTTGATGATGCCGGTGGAGAGTGGCCTATGATTGGGCATGCACCCTGGAATGGTTGCCATCTTGCTGACTTTGTGATGCCATTTTTCCTCTTCATTGTCGGAACGTCTATTGCACTTTCTCTCAAGAGAATACCAGACCAACTTTTGGCTGTCAAGAAGGTGATTCTTAGAACTCTCAAGCTCCTTTTCTGGGGTCTCCTATTACAAGGAGGTTTCTCACATGCTCCTGACAAACTAACATATGGTGTTGACATGAAAGAAATAAGATGGTGCGGGATTCTCCAGAGAATTGCTCTTGCATATCTGGTAGTGGCACTGATAGAAATTTTCTTGAGAAGTGCACAAACCAAAGATGTGACACCTGGCAGGCTCTCCATTTTCAAGTTATACTATTGGCAATGGCTGGTTGCAGCATGTGTTCTCACAACTTACTTTGCTGTTATTTATGGGACATATGTTCCTGATTGGCAATTTACTGTCCATGACGAAGGCAGTAGTGATTATGGGAAGAGTTTCACGGTATCTTGTGGCGTTAGAGGAGAACTGGATCCTCCTTGTAATGCAGTGGGATACATTGATAGACAAGTGTTGGGAATCAATCATATGTATCAGCATCCAGCTTGGAAAAGATCAAAAGCTTGCACTGAGAATTCTCCATATGGAGGACCTTTCCGAAATGGTGCTCCATCATGGTGCCATGCTCCTTTTGAACCTGAAGGAATTCTAAGCTCAATATCTGCAATTCTTTCCACAATCGTCGGAGTACATTTTGGACATGTGCTTATACATATGAAGGATCATCAAACTAGATTGAAGCATTGGATCCTAATGGGCTTTGCTCTGCTCATCCTAGGAATTGTTCTTCATTTCACTCATGCAATTCCTTCAAATAAACAGCTATATACGTTTAGTTACGTATGCATAACATCTGGAGCAGCAGCTTTGGTGTTTTCAGCCTTCTACATCATGGTTGATATCTGGGATATAAAGTACCTGTTTCTTCCCCTGCAATGGATCGGCATGAATGCTATGCTTGTCTACGTTATGGCAGCTGAAGGCATCTTTGCAGGGTTCTTCAACGGGTGGTATTACAAGGACCCCCATAATACGCTAATATATTGGATCCAGAAGCACATTTTTGTTGGGGTTTGGCATTCAAGGAGAGTAGGCATTCTACTCTATGTAATCTTCGCAGAGATCTTGTTTTGGGGCATTGTTGCTGGCATTTTGCATTGGTTGGGCATATATTGGAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624 DUF5009

Protein Analysis

467

Amino Acids

52.94

Weight (kDa)

8.62

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27730 AT5G27730 AT5G27730 AT5G27730 AT5G27730
fragaria_vesca	FvH4_6g06580 FvH4_6g06580 FvH4_6g16610
malus_domestica	MD04G1090600.v1.1 MD04G1200000.v1.1
prunus_persica	Prupe.6G320400_v2.0.a1 Prupe.7G127200_v2.0.a1
pyrus_communis	pycom04g17650
rosa_chinensis	RchiOBHm_Chr3g0455771 RchiOBHm_Chr3g0470581
rosa_laevigata	RLG00000024258 RLG00000024259 RLG00000025333
rosa_multiflora	Rmu_sc0002050.1_g000004 Rmu_sc0002115.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410730 Rroxscaffold_6G00423490 Rroxscaffold_6G00424000
rosa_rugosa	Rorug03G0009800 Rorug03G0110000
rosa_samantha	Rh3BG071900 Rh3BG184700 Rh3CG070200 Rh3CG175200 Rh3DG072600 Rh3DG190000
rosa_wichuraiana	Rw3G005610 Rw3G005960 Rw3G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	837
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	1182
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	8 cut(s)	686, 699, 948, 961, 974, 1166, 1261, 1274
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	468, 793, 864
AcuI	CTGAAG	2 cut(s)	879, 1218
AfaI	GTAC	2 cut(s)	909, 1136
AfiI	CCNNNNNNNGG	6 cut(s)	176, 194, 289, 334, 806, 1155
AflIII	ACRYGT	1 cut(s)	919
AgsI	TTSAA	6 cut(s)	526, 854, 958, 1032, 1222, 1302
AjnI	CCWGG	2 cut(s)	188, 505
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
AluBI	AGCT	9 cut(s)	98, 325, 764, 782, 873, 1042, 1085, 1196, 1399
AluI	AGCT	9 cut(s)	98, 325, 764, 782, 873, 1042, 1085, 1196, 1399
Alw21I	GWGCWC	2 cut(s)	487, 829
Alw26I	GTCTC	2 cut(s)	133, 344
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	8 cut(s)	686, 699, 948, 961, 974, 1166, 1261, 1274
AoxI	GGCC	3 cut(s)	3, 118, 167
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	4 cut(s)	554, 1079, 1082, 1193
ApoI	RAATTY	3 cut(s)	468, 793, 864
Asp700I	GAANNNNTTC	2 cut(s)	656, 864
AspA2I	CCTAGG	1 cut(s)	994
AspS9I	GGNCC	2 cut(s)	809, 1240
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	809, 1240
AvrII	CCTAGG	1 cut(s)	994
BaeGI	GKGCMC	1 cut(s)	487
BamHI	GGATCC	3 cut(s)	691, 966, 1266
BanI	GGYRCC	1 cut(s)	837
Bbv12I	GWGCWC	2 cut(s)	487, 829
BbvI	GCAGC	4 cut(s)	566, 1091, 1094, 1205
BccI	CCATC	3 cut(s)	210, 405, 838
BciT130I	CCWGG	2 cut(s)	190, 507
BciVI	GTATCC	1 cut(s)	707
BcoDI	GTCTC	2 cut(s)	133, 344
BfaI	CTAG	2 cut(s)	951, 995
BfuI	GTATCC	1 cut(s)	707
BglI	GCCNNNNNGGC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	1341
BisI	GCNGC	4 cut(s)	555, 1080, 1083, 1194
BlnI	CCTAGG	1 cut(s)	994
BlsI	GCNGC	4 cut(s)	556, 1081, 1084, 1195
Bme1390I	CCNGG	2 cut(s)	190, 507
Bme18I	GGWCC	2 cut(s)	809, 1240
BmgT120I	GGNCC	2 cut(s)	809, 1240
BmiI	GGNNCC	6 cut(s)	54, 693, 839, 968, 1242, 1268
BmrFI	CCNGG	2 cut(s)	190, 507
BmsI	GCATC	4 cut(s)	142, 210, 766, 1212
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	3 cut(s)	14, 410, 1095
BpuEI	CTTGAG	3 cut(s)	251, 305, 496
BsaAI	YACGTR	1 cut(s)	1060
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	115, 188, 994
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 194, 289, 334, 806, 1155
Bse118I	RCCGGY	2 cut(s)	22, 155
Bse1I	ACTGG	1 cut(s)	693
Bse3DI	GCAATG	2 cut(s)	548, 1160
BseBI	CCWGG	2 cut(s)	190, 507
BseDI	CCNNGG	3 cut(s)	115, 188, 994
BseGI	GGATG	2 cut(s)	757, 990
BseLI	CCNNNNNNNGG	6 cut(s)	176, 194, 289, 334, 806, 1155
BseMI	GCAATG	2 cut(s)	548, 1160
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	1 cut(s)	693
BseRI	GAGGAG	1 cut(s)	696
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	4 cut(s)	566, 1091, 1094, 1205
BshFI	GGCC	3 cut(s)	5, 120, 169
BshNI	GGYRCC	1 cut(s)	837
BsiHKAI	GWGCWC	2 cut(s)	487, 829
BsiSI	CCGG	2 cut(s)	23, 156
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	6 cut(s)	176, 194, 289, 334, 806, 1155
BsmAI	GTCTC	2 cut(s)	133, 344
BsmFI	GGGAC	1 cut(s)	607
BsmI	GAATGC	3 cut(s)	1174, 1297, 1314
BsnI	GGCC	3 cut(s)	5, 120, 169
Bso31I	GGTCTC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	487, 829
Bsp143I	GATC	7 cut(s)	691, 773, 940, 966, 1158, 1266, 1341
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	3 cut(s)	5, 120, 169
BspCNI	CTCAG	1 cut(s)	781
BspLI	GGNNCC	6 cut(s)	54, 693, 839, 968, 1242, 1268
BspPI	GGATC	8 cut(s)	686, 699, 948, 961, 974, 1166, 1261, 1274
BspT107I	GGYRCC	1 cut(s)	837
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	548, 1160
BsrFI	RCCGGY	2 cut(s)	22, 155
BsrI	ACTGG	1 cut(s)	693
BssAI	RCCGGY	2 cut(s)	22, 155
BssECI	CCNNGG	3 cut(s)	115, 188, 994
BssMI	GATC	7 cut(s)	691, 773, 940, 966, 1158, 1266, 1341
BssT1I	CCWWGG	1 cut(s)	994
Bst2UI	CCWGG	2 cut(s)	190, 507
Bst4CI	ACNGT	3 cut(s)	127, 622, 664
Bst6I	CTCTTC	2 cut(s)	239, 647
BstBAI	YACGTR	1 cut(s)	1060
BstC8I	GCNNGC	4 cut(s)	183, 512, 784, 1366
BstDEI	CTNAG	3 cut(s)	311, 789, 869
BstF5I	GGATG	2 cut(s)	757, 990
BstKTI	GATC	7 cut(s)	694, 776, 943, 969, 1161, 1269, 1344
BstMAI	GTCTC	2 cut(s)	133, 344
BstMBI	GATC	7 cut(s)	691, 773, 940, 966, 1158, 1266, 1341
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	190, 507
BstNSI	RCATGY	4 cut(s)	185, 368, 561, 923
BstSCI	CCNGG	2 cut(s)	188, 505
BstSLI	GKGCMC	1 cut(s)	487
BstSNI	TACGTA	1 cut(s)	1060
BstV1I	GCAGC	4 cut(s)	566, 1091, 1094, 1205
BstX2I	RGATCY	4 cut(s)	691, 966, 1266, 1341
BstYI	RGATCY	4 cut(s)	691, 966, 1266, 1341
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	3 cut(s)	5, 120, 169
BtsCI	GGATG	2 cut(s)	757, 990
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	4 cut(s)	123, 458, 714, 786
Cac8I	GCNNGC	4 cut(s)	183, 512, 784, 1366
Cfr10I	RCCGGY	2 cut(s)	22, 155
Cfr13I	GGNCC	2 cut(s)	809, 1240
Csp6I	GTAC	2 cut(s)	908, 1135
CviQI	GTAC	2 cut(s)	908, 1135
DdeI	CTNAG	3 cut(s)	311, 789, 869
DpnI	GATC	7 cut(s)	693, 775, 942, 968, 1160, 1268, 1343
DpnII	GATC	7 cut(s)	691, 773, 940, 966, 1158, 1266, 1341
DraI	TTTAAA	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	239, 647
EarI	CTCTTC	2 cut(s)	239, 647
Eco105I	TACGTA	1 cut(s)	1060
Eco130I	CCWWGG	1 cut(s)	994
Eco147I	AGGCCT	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	1120
Eco47I	GGWCC	2 cut(s)	809, 1240
Eco57I	CTGAAG	2 cut(s)	879, 1218
EcoO109I	RGGNCCY	2 cut(s)	809, 1240
EcoRI	GAATTC	2 cut(s)	793, 864
EcoRII	CCWGG	2 cut(s)	188, 505
EcoRV	GATATC	1 cut(s)	1120
EcoT14I	CCWWGG	1 cut(s)	994
EcoT22I	ATGCAT	1 cut(s)	1067
ErhI	CCWWGG	1 cut(s)	994
FaqI	GGGAC	1 cut(s)	607
FauI	CCCGC	1 cut(s)	410
FauNDI	CATATG	5 cut(s)	385, 598, 747, 802, 933
FblI	GTMKAC	1 cut(s)	1182
Fnu4HI	GCNGC	4 cut(s)	555, 1080, 1083, 1194
FokI	GGATG	2 cut(s)	744, 977
Fsp4HI	GCNGC	4 cut(s)	555, 1080, 1083, 1194
FspBI	CTAG	2 cut(s)	951, 995
GluI	GCNGC	4 cut(s)	555, 1080, 1083, 1194
GsuI	CTGGAG	3 cut(s)	14, 410, 1095
HaeIII	GGCC	3 cut(s)	5, 120, 169
HapII	CCGG	2 cut(s)	23, 156
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	780, 1397
HinfI	GANTC	3 cut(s)	307, 421, 738
HpaII	CCGG	2 cut(s)	23, 156
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	3 cut(s)	394, 485, 1183
Hpy188I	TCNGA	6 cut(s)	52, 67, 116, 245, 818, 905
Hpy188III	TCNNGA	8 cut(s)	268, 298, 371, 427, 475, 605, 1074, 1270
Hpy8I	GTNNAC	3 cut(s)	394, 485, 1183
Hpy99I	CGWCG	1 cut(s)	905
HpyAV	CCTTC	7 cut(s)	295, 626, 854, 931, 1038, 1111, 1193
HpyCH4III	ACNGT	3 cut(s)	127, 622, 664
HpyCH4IV	ACGT	4 cut(s)	248, 1049, 1059, 1185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	3 cut(s)	311, 789, 869
HpySE526I	ACGT	4 cut(s)	248, 1049, 1059, 1185
Kzo9I	GATC	7 cut(s)	691, 773, 940, 966, 1158, 1266, 1341
LmnI	GCTCC	5 cut(s)	330, 373, 832, 850, 1076
Lsp1109I	GCAGC	4 cut(s)	566, 1091, 1094, 1205
LweI	GCATC	4 cut(s)	142, 210, 766, 1212
MaeI	CTAG	2 cut(s)	951, 995
MaeII	ACGT	4 cut(s)	248, 1049, 1059, 1185
MaeIII	GTNAC	2 cut(s)	499, 1055
MalI	GATC	7 cut(s)	693, 775, 942, 968, 1160, 1268, 1343
MboI	GATC	7 cut(s)	691, 773, 940, 966, 1158, 1266, 1341
MboII	GAAGA	7 cut(s)	103, 226, 664, 998, 1136, 1210, 1324
MflI	RGATCY	4 cut(s)	691, 966, 1266, 1341
MhlI	GDGCHC	2 cut(s)	487, 829
MluCI	AATT	8 cut(s)	432, 468, 614, 793, 864, 885, 999, 1023
MmeI	TCCRAC	3 cut(s)	90, 223, 883
MnlI	CCTC	9 cut(s)	50, 110, 113, 131, 242, 347, 674, 705, 800
Mph1103I	ATGCAT	1 cut(s)	1067
MroXI	GAANNNNTTC	2 cut(s)	656, 864
MseI	TTAA	2 cut(s)	80, 1402
MslI	CAYNNNNRTG	1 cut(s)	835
MspA1I	CMGCKG	1 cut(s)	1196
MspI	CCGG	2 cut(s)	23, 156
MspR9I	CCNGG	2 cut(s)	190, 507
Mva1269I	GAATGC	3 cut(s)	1174, 1297, 1314
MvaI	CCWGG	2 cut(s)	190, 507
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeI	CATATG	5 cut(s)	385, 598, 747, 802, 933
NdeII	GATC	7 cut(s)	691, 773, 940, 966, 1158, 1266, 1341
NlaIV	GGNNCC	6 cut(s)	54, 693, 839, 968, 1242, 1268
NmuCI	GTSAC	1 cut(s)	499
NsiI	ATGCAT	1 cut(s)	1067
NspI	RCATGY	4 cut(s)	185, 368, 561, 923
PaeI	GCATGC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	120
PciI	ACATGT	1 cut(s)	919
PctI	GAATGC	3 cut(s)	1174, 1297, 1314
PdmI	GAANNNNTTC	2 cut(s)	656, 864
PfeI	GAWTC	3 cut(s)	307, 421, 738
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	556, 1081, 1084, 1195
Ppu21I	YACGTR	1 cut(s)	1060
PpuMI	RGGWCCY	2 cut(s)	809, 1240
PscI	ACATGT	1 cut(s)	919
Psp5II	RGGWCCY	2 cut(s)	809, 1240
Psp6I	CCWGG	2 cut(s)	188, 505
PspGI	CCWGG	2 cut(s)	188, 505
PspN4I	GGNNCC	6 cut(s)	54, 693, 839, 968, 1242, 1268
PspPI	GGNCC	2 cut(s)	809, 1240
PspPPI	RGGWCCY	2 cut(s)	809, 1240
PsuI	RGATCY	4 cut(s)	691, 966, 1266, 1341
PvuII	CAGCTG	1 cut(s)	1196
RsaI	GTAC	2 cut(s)	909, 1136
RsaNI	GTAC	2 cut(s)	908, 1135
RseI	CAYNNNNRTG	1 cut(s)	835
SaqAI	TTAA	2 cut(s)	80, 1402
SatI	GCNGC	4 cut(s)	555, 1080, 1083, 1194
Sau3AI	GATC	7 cut(s)	691, 773, 940, 966, 1158, 1266, 1341
Sau96I	GGNCC	2 cut(s)	809, 1240
ScrFI	CCNGG	2 cut(s)	190, 507
SduI	GDGCHC	2 cut(s)	487, 829
SfaNI	GCATC	4 cut(s)	142, 210, 766, 1212
SinI	GGWCC	2 cut(s)	809, 1240
SmiMI	CAYNNNNRTG	1 cut(s)	835
SmlI	CTYRAG	3 cut(s)	266, 320, 475
SmoI	CTYRAG	3 cut(s)	266, 320, 475
SnaBI	TACGTA	1 cut(s)	1060
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	8 cut(s)	432, 468, 614, 793, 864, 885, 999, 1023
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	2 cut(s)	951, 995
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	188, 505
StyI	CCWWGG	1 cut(s)	994
TaaI	ACNGT	3 cut(s)	127, 622, 664
TaiI	ACGT	4 cut(s)	251, 1052, 1062, 1188
TaqI	TCGA	1 cut(s)	105
TasI	AATT	8 cut(s)	432, 468, 614, 793, 864, 885, 999, 1023
TatI	WGTACW	1 cut(s)	907
TfiI	GAWTC	3 cut(s)	307, 421, 738
Tru1I	TTAA	2 cut(s)	80, 1402
Tru9I	TTAA	2 cut(s)	80, 1402
TscAI	CASTG	4 cut(s)	130, 465, 714, 793
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	4 cut(s)	554, 1079, 1082, 1193
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	5 cut(s)	226, 413, 950, 998, 1181
TspRI	CASTG	4 cut(s)	130, 465, 714, 793
Van91I	CCANNNNNTGG	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	483
VpaK11BI	GGWCC	2 cut(s)	809, 1240
XapI	RAATTY	3 cut(s)	468, 793, 864
XceI	RCATGY	4 cut(s)	185, 368, 561, 923
XmaJI	CCTAGG	1 cut(s)	994
XmiI	GTMKAC	1 cut(s)	1182
XmnI	GAANNNNTTC	2 cut(s)	656, 864
XspI	CTAG	2 cut(s)	951, 995
Zsp2I	ATGCAT	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.