Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002050.1

Orthogroup ID

OG0003888

Physical Location & Seq

Genomic Coordinates Forward (+)

24070 .. 26123

Gene Structure 2054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002050.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggccgaaatcaaagccgaaccggctcaccagcaccatctcatcgtatcggaacctgatatttccgaccagaagcctttaaaaccgaaacgtgtagcttccctcgacatcttccgaggcctcactgtctctttgatgattttggttgatgatgccggtggagagtggcctatgattgggcatgcaccctggaatggttgtaatcttgctgactttgtgatgccatttttcctcttcattgtcggaatgtctattgcactttctcttaagagaataccagaccaacttttggctgtcaagaaggtgattcttagaactctcaagctccttttctggggtctcctattacaaggaggtttctcacatgctcctgacaaactaacatatggtgttgacatgaaagaaataagatggtgcgggattctccagagaattgctcttgcatatctggtagtggcactgatagaaattttcttgagaagtgcacaaaccaaagatgtgacacctggcaggctctccattttcaagttatactattggcaatggctggttgcagcatgtgttctcacaacttactttgctgttatttatgggacatatgttcctgattggcaatttaccgtccatgacgaaggcagtagtgattatgggaagagtttcacggtatcttgtggcgttagaggagaactggatcctccttgtaatgcagtgggatacattgatagacaagtgttgggaatcaatcatatgtatcagcatccagcttggaaaagatcaaaagcttgcactgagaattctccatatggaggacctttccgaaatggtgctccatcatggtgccatgctccttttgaacctgaaggaattctaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624 DUF5009

Protein Analysis

291

Amino Acids

32.68

Weight (kDa)

8.11

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27730 AT5G27730 AT5G27730 AT5G27730 AT5G27730
fragaria_vesca	FvH4_6g06580 FvH4_6g06580 FvH4_6g16610
malus_domestica	MD04G1090600.v1.1 MD04G1200000.v1.1
prunus_persica	Prupe.6G320400_v2.0.a1 Prupe.7G127200_v2.0.a1
pyrus_communis	pycom04g17650
rosa_chinensis	RchiOBHm_Chr3g0455771 RchiOBHm_Chr3g0470581
rosa_laevigata	RLG00000024258 RLG00000024259 RLG00000025333
rosa_multiflora	Rmu_sc0002050.1_g000004 Rmu_sc0002115.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410730 Rroxscaffold_6G00423490 Rroxscaffold_6G00424000
rosa_rugosa	Rorug03G0009800 Rorug03G0110000
rosa_samantha	Rh3BG071900 Rh3BG184700 Rh3CG070200 Rh3CG175200 Rh3DG072600 Rh3DG190000
rosa_wichuraiana	Rw3G005610 Rw3G005960 Rw3G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	837
AccB7I	CCANNNNNTGG	1 cut(s)	289
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	2 cut(s)	686, 699
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	468, 793, 864
AfiI	CCNNNNNNNGG	5 cut(s)	176, 194, 289, 334, 806
AflII	CTTAAG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	526, 854
AjnI	CCWGG	2 cut(s)	188, 505
AluBI	AGCT	4 cut(s)	98, 325, 764, 782
AluI	AGCT	4 cut(s)	98, 325, 764, 782
Alw21I	GWGCWC	2 cut(s)	487, 829
Alw26I	GTCTC	2 cut(s)	133, 344
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	2 cut(s)	686, 699
AoxI	GGCC	3 cut(s)	3, 118, 167
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	3 cut(s)	468, 793, 864
Asp700I	GAANNNNTTC	2 cut(s)	656, 864
AspS9I	GGNCC	1 cut(s)	809
AsuHPI	GGTGA	2 cut(s)	20, 316
AvaII	GGWCC	1 cut(s)	809
BaeGI	GKGCMC	1 cut(s)	487
BamHI	GGATCC	1 cut(s)	691
BanI	GGYRCC	1 cut(s)	837
Bbv12I	GWGCWC	2 cut(s)	487, 829
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	3 cut(s)	45, 405, 838
BciT130I	CCWGG	2 cut(s)	190, 507
BciVI	GTATCC	1 cut(s)	707
BcoDI	GTCTC	2 cut(s)	133, 344
BfrI	CTTAAG	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	707
BglI	GCCNNNNNGGC	1 cut(s)	23
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	2 cut(s)	190, 507
Bme18I	GGWCC	1 cut(s)	809
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	3 cut(s)	54, 693, 839
BmrFI	CCNGG	2 cut(s)	190, 507
BmsI	GCATC	3 cut(s)	142, 210, 766
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	305, 496
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	115, 188
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 194, 289, 334, 806
Bse118I	RCCGGY	2 cut(s)	22, 155
Bse1I	ACTGG	1 cut(s)	693
Bse3DI	GCAATG	1 cut(s)	548
BseBI	CCWGG	2 cut(s)	190, 507
BseDI	CCNNGG	2 cut(s)	115, 188
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	5 cut(s)	176, 194, 289, 334, 806
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	1 cut(s)	693
BseRI	GAGGAG	1 cut(s)	696
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	566
BshFI	GGCC	3 cut(s)	5, 120, 169
BshNI	GGYRCC	1 cut(s)	837
BsiHKAI	GWGCWC	2 cut(s)	487, 829
BsiSI	CCGG	2 cut(s)	23, 156
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	5 cut(s)	176, 194, 289, 334, 806
BsmAI	GTCTC	2 cut(s)	133, 344
BsmFI	GGGAC	1 cut(s)	607
BsnI	GGCC	3 cut(s)	5, 120, 169
Bso31I	GGTCTC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	487, 829
Bsp143I	GATC	2 cut(s)	691, 773
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	3 cut(s)	5, 120, 169
BspCNI	CTCAG	1 cut(s)	781
BspLI	GGNNCC	3 cut(s)	54, 693, 839
BspPI	GGATC	2 cut(s)	686, 699
BspT107I	GGYRCC	1 cut(s)	837
BspTI	CTTAAG	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	548
BsrFI	RCCGGY	2 cut(s)	22, 155
BsrI	ACTGG	1 cut(s)	693
BssAI	RCCGGY	2 cut(s)	22, 155
BssECI	CCNNGG	2 cut(s)	115, 188
BssMI	GATC	2 cut(s)	691, 773
Bst2UI	CCWGG	2 cut(s)	190, 507
Bst4CI	ACNGT	3 cut(s)	127, 622, 664
Bst6I	CTCTTC	2 cut(s)	239, 647
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	183, 512, 784
BstDEI	CTNAG	3 cut(s)	311, 789, 869
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	2 cut(s)	694, 776
BstMAI	GTCTC	2 cut(s)	133, 344
BstMBI	GATC	2 cut(s)	691, 773
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	190, 507
BstNSI	RCATGY	3 cut(s)	185, 368, 561
BstSCI	CCNGG	2 cut(s)	188, 505
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	3 cut(s)	5, 120, 169
BtsCI	GGATG	1 cut(s)	757
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	4 cut(s)	123, 458, 714, 786
Cac8I	GCNNGC	3 cut(s)	183, 512, 784
Cfr10I	RCCGGY	2 cut(s)	22, 155
Cfr13I	GGNCC	1 cut(s)	809
CviAII	CATG	7 cut(s)	182, 365, 397, 558, 626, 834, 842
DdeI	CTNAG	3 cut(s)	311, 789, 869
DpnI	GATC	2 cut(s)	693, 775
DpnII	GATC	2 cut(s)	691, 773
DraI	TTTAAA	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	239, 647
EarI	CTCTTC	2 cut(s)	239, 647
Eco147I	AGGCCT	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	809
EcoO109I	RGGNCCY	1 cut(s)	809
EcoRI	GAATTC	2 cut(s)	793, 864
EcoRII	CCWGG	2 cut(s)	188, 505
FaeI	CATG	7 cut(s)	185, 368, 400, 561, 629, 837, 845
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	7 cut(s)	181, 364, 396, 557, 625, 833, 841
FauI	CCCGC	1 cut(s)	410
FauNDI	CATATG	4 cut(s)	385, 598, 747, 802
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	1 cut(s)	744
Fsp4HI	GCNGC	1 cut(s)	555
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	5, 120, 169
HapII	CCGG	2 cut(s)	23, 156
Hin1II	CATG	7 cut(s)	185, 368, 400, 561, 629, 837, 845
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	780
HinfI	GANTC	3 cut(s)	307, 421, 738
HpaII	CCGG	2 cut(s)	23, 156
HphI	GGTGA	2 cut(s)	20, 316
Hpy166II	GTNNAC	2 cut(s)	394, 485
Hpy188I	TCNGA	5 cut(s)	52, 67, 116, 245, 818
Hpy188III	TCNNGA	5 cut(s)	298, 371, 427, 475, 605
Hpy8I	GTNNAC	2 cut(s)	394, 485
HpyAV	CCTTC	3 cut(s)	295, 626, 854
HpyCH4III	ACNGT	3 cut(s)	127, 622, 664
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	7 cut(s)	185, 257, 443, 485, 554, 707, 786
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	3 cut(s)	311, 789, 869
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	7 cut(s)	185, 368, 400, 561, 629, 837, 845
Kzo9I	GATC	2 cut(s)	691, 773
LmnI	GCTCC	4 cut(s)	330, 373, 832, 850
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	3 cut(s)	142, 210, 766
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	2 cut(s)	693, 775
MboI	GATC	2 cut(s)	691, 773
MboII	GAAGA	3 cut(s)	103, 226, 664
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	487, 829
MluCI	AATT	5 cut(s)	432, 468, 614, 793, 864
MmeI	TCCRAC	2 cut(s)	90, 223
MnlI	CCTC	8 cut(s)	110, 113, 131, 242, 347, 674, 705, 800
MroXI	GAANNNNTTC	2 cut(s)	656, 864
MseI	TTAA	2 cut(s)	80, 267
MslI	CAYNNNNRTG	1 cut(s)	835
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	2 cut(s)	23, 156
MspR9I	CCNGG	2 cut(s)	190, 507
MvaI	CCWGG	2 cut(s)	190, 507
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeI	CATATG	4 cut(s)	385, 598, 747, 802
NdeII	GATC	2 cut(s)	691, 773
NlaIII	CATG	7 cut(s)	185, 368, 400, 561, 629, 837, 845
NlaIV	GGNNCC	3 cut(s)	54, 693, 839
NmuCI	GTSAC	1 cut(s)	499
NspI	RCATGY	3 cut(s)	185, 368, 561
PaeI	GCATGC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	120
PdmI	GAANNNNTTC	2 cut(s)	656, 864
PfeI	GAWTC	3 cut(s)	307, 421, 738
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	809
Psp5II	RGGWCCY	1 cut(s)	809
Psp6I	CCWGG	2 cut(s)	188, 505
PspGI	CCWGG	2 cut(s)	188, 505
PspN4I	GGNNCC	3 cut(s)	54, 693, 839
PspPI	GGNCC	1 cut(s)	809
PspPPI	RGGWCCY	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	691
RseI	CAYNNNNRTG	1 cut(s)	835
SaqAI	TTAA	2 cut(s)	80, 267
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	2 cut(s)	691, 773
Sau96I	GGNCC	1 cut(s)	809
ScrFI	CCNGG	2 cut(s)	190, 507
SduI	GDGCHC	2 cut(s)	487, 829
SfaNI	GCATC	3 cut(s)	142, 210, 766
SinI	GGWCC	1 cut(s)	809
SmiMI	CAYNNNNRTG	1 cut(s)	835
SmlI	CTYRAG	3 cut(s)	266, 320, 475
SmoI	CTYRAG	3 cut(s)	266, 320, 475
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	5 cut(s)	432, 468, 614, 793, 864
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	417
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	188, 505
TaaI	ACNGT	3 cut(s)	127, 622, 664
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	105
TasI	AATT	5 cut(s)	432, 468, 614, 793, 864
TfiI	GAWTC	3 cut(s)	307, 421, 738
Tru1I	TTAA	2 cut(s)	80, 267
Tru9I	TTAA	2 cut(s)	80, 267
TscAI	CASTG	4 cut(s)	130, 465, 714, 793
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	2 cut(s)	226, 413
TspRI	CASTG	4 cut(s)	130, 465, 714, 793
Van91I	CCANNNNNTGG	1 cut(s)	289
Vha464I	CTTAAG	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	3 cut(s)	468, 793, 864
XceI	RCATGY	3 cut(s)	185, 368, 561
XmnI	GAANNNNTTC	2 cut(s)	656, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.