Rorug03G0110000

Heparan-alpha-glucosaminide N-acetyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003888
Physical Location & Seq
Reverse (-)
8819630 .. 8821094
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0110000.1

Sequence Viewer

Length: 603 bp
ATGGCGGTCGCTTCTGGAACACTCGACATCCAGTGGCTGATCTCCAACAGCGACGACCTTGTGCGGGTCTTGAAGGACCCCAGAGACCTCAACCACTTGACCCACTGCCTCCAAAACTCCCAAGCCCTCCGCTCCTCCTCCGATTCCGATTTCGCCGAAGCTCACAACTTGCTCCGAGATTATGAGAAGAAGTTAGATGCTTGCAAGAAGAAAACCGAGGAGGCGAAAACCGAGGCGGTTGCTGATGAGGAATTGGAACTTCTTCAGAGAGAATTGGATGAGGGCATTCGACAGGAGCATTTGCTTATGGAAGAGCTCAGAGTTATCAGCGGCGAGATGGATGATTTGGAAGGCCAAAGGGTTGCGGTTTTGGAAAAGAAGAAAATGTTGAAGAAACAGAAGCAGGATGAGTTCAGGGCGCAGAGGAAGCTTTCCATGTATGCTTCTGTTACAAATATTATACCAAACCTGGATGATCAGTCAAGAGTCATGGGCTATATTGTGGATAGAGATACAAAAGCGGTACAGAACTTTGAAATTGATGCAGAGAAGATGACTGCCTATGAAACATGTAATAGCATTTGGAAGATGATAACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko04142 map00531 map01100 map04142
Pfam Domains
Protein Families
DUF1624

Protein Analysis

200

Amino Acids

23.05

Weight (kDa)

5.0

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 132
AciI CCGC 7 cut(s) 5, 64, 130, 236, 330, 365, 521
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 1 cut(s) 525
AfiI CCNNNNNNNGG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 3 cut(s) 73, 391, 536
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 3 cut(s) 161, 316, 430
AluI AGCT 3 cut(s) 161, 316, 430
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 37
AoxI GGCC 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 470
BclI TGATCA 1 cut(s) 475
BcoDI GTCTC 1 cut(s) 78
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 2 cut(s) 187, 532
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 216, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 2 cut(s) 216, 231
BseGI GGATG 5 cut(s) 27, 283, 346, 412, 478
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 3 cut(s) 124, 127, 233
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 1 cut(s) 354
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 2 cut(s) 39, 475
BspACI CCGC 7 cut(s) 5, 64, 130, 236, 330, 365, 521
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 216, 231
BssMI GATC 2 cut(s) 39, 475
Bst2UI CCWGG 1 cut(s) 470
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 5 cut(s) 27, 283, 346, 412, 478
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 2 cut(s) 42, 478
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 39, 475
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 468
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 5 cut(s) 27, 283, 346, 412, 478
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 38, 103
Cac8I GCNNGC 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 37
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 524
CviAII CATG 4 cut(s) 436, 490, 570, 600
CviJI RGCY 7 cut(s) 37, 125, 161, 316, 354, 430, 495
CviKI_1 RGCY 7 cut(s) 37, 125, 161, 316, 354, 430, 495
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 1 cut(s) 317
DpnI GATC 2 cut(s) 41, 477
DpnII GATC 2 cut(s) 39, 475
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 318
FaeI CATG 4 cut(s) 439, 493, 573, 603
FatI CATG 4 cut(s) 435, 489, 569, 599
FauI CCCGC 1 cut(s) 57
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 5 cut(s) 14, 290, 353, 419, 485
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 331
GlaI GCGC 1 cut(s) 420
GluI GCNGC 1 cut(s) 331
HaeIII GGCC 1 cut(s) 354
HhaI GCGC 1 cut(s) 421
Hin1II CATG 4 cut(s) 439, 493, 573, 603
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 2 cut(s) 143, 486
Hpy188I TCNGA 5 cut(s) 142, 148, 176, 267, 320
Hpy188III TCNNGA 3 cut(s) 15, 70, 483
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 67, 344
HpyCH4V TGCA 2 cut(s) 204, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 4 cut(s) 439, 493, 573, 603
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 2 cut(s) 39, 475
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 3 cut(s) 137, 177, 295
LpnPI CCDG 7 cut(s) 44, 94, 278, 389, 400, 455, 482
LweI GCATC 2 cut(s) 187, 532
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 41, 477
MbiI CCGCTC 1 cut(s) 132
MboI GATC 2 cut(s) 39, 475
MboII GAAGA 8 cut(s) 199, 220, 254, 323, 391, 403, 562, 598
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 3 cut(s) 251, 272, 537
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 470
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeII GATC 2 cut(s) 39, 475
NlaIII CATG 4 cut(s) 439, 493, 573, 603
NlaIV GGNNCC 1 cut(s) 78
NspI RCATGY 1 cut(s) 573
PciI ACATGT 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 306
PctI GAATGC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 332
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PpuMI RGGWCCY 1 cut(s) 76
PscI ACATGT 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
SacI GAGCTC 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 2 cut(s) 39, 475
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 1 cut(s) 318
SetI ASST 6 cut(s) 60, 90, 163, 318, 432, 471
SfaNI GCATC 2 cut(s) 187, 532
SinI GGWCC 1 cut(s) 76
Sse9I AATT 3 cut(s) 251, 272, 537
SsiI CCGC 7 cut(s) 5, 64, 130, 236, 330, 365, 521
SspI AATATT 1 cut(s) 457
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 468
TaqI TCGA 2 cut(s) 24, 289
TasI AATT 3 cut(s) 251, 272, 537
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 2 cut(s) 38, 110
TspDTI ATGAA 1 cut(s) 579
TspRI CASTG 2 cut(s) 38, 110
VpaK11BI GGWCC 1 cut(s) 76
XceI RCATGY 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.