Rroxscaffold_6G00424000

Heparan-alpha-glucosaminide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003888
Physical Location & Seq
Reverse (-)
45249285 .. 45253060
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00424000.1

Sequence Viewer

Length: 1032 bp
ATGGCTGAAATCAGAGCCGACCCGGCTCACCAGCAACATCTCATCGTATCAGAACCCGATATTTCCGACCAGAAGCCTTCAAAACCGAAACGTGTAGCTTCCCTCGACATCTTCCGAGGCCTCACTGTCTCTTTGATGATTTTGGTTGATGATGCCGGTGGAGAGTGGCCTATGATTGGGCATGCACCCTGGAATGGTTGCAATCTTGCTGACTTTGTGATGCCATTTTTCCTCTTCATTGTGGGAATGTCTATTGCACTTTCTCTTAAGAGAATACCAGACCAACTTTTGGCTGTCAAGAAGGTGATTCTTAGAACTCTCAAGCTCCTTTTCTGGGGTCTCCTATTACAAGGAGGTTTCTCACATGCTCCTGACAAACTAACATATGGTGTTGACATGAAAGAAATAAGATGGTGCGGGATTCTCCAGAGAATTGCTCTTGCATATCTGGTAGTGGCACTGATAGAAATTTTCTTGAGAAGTGCACAAACCAAAGATGTGCCACCTGGCAGGCTCTCCATTTTCAAGTTATACTATTGGCAATGGCTGGTTGCAGCATGTGTTCTCACAACTTACTTTGCTGTTATTTATGGGACATATGTTCCTGATTGGCAATTTACCGTCCACGACAAAGACAGTAGTGATTATGGGAAGAGTTTCACGGTAACTTGTGGCGTTAGAGGAGAACTGGATCCTCCTTGTAATGCAGTGGGATACATTGATAGACAAGTGTTGGGAATCAATCATATGTATCAGCATCCAGCTTGGAAAAGATCAAAAGCTTGCACTAAGAATTCTCCATATGAAGGACCTTTCCGAAATGGTGCTCCATCATGGTGCCGTGCTCCTTTTGAACCTGAAGGAATTCTAAGCTCAATATCTGCAATTCTCTCCACAATCGTCGGAGTACATTTTGGACATGTGCTTATACATATGAAGGATCATCAAACTAGATTGAAGCATTGGATCCTAATGGGCTTTGCTCTCCTCATCCTAGGAATTGTTCTTCATTTCACTCATGGTGCGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko04142 map00531 map01100 map04142
Pfam Domains
Protein Families
DUF1624 DUF5009

Protein Analysis

343

Amino Acids

38.53

Weight (kDa)

8.87

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HGSNAT_cat PF07786 31 - 155 1.1e-06 Heparan-alpha-glucosaminide N-acetyltransferase, catalytic
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 837
AccB7I CCANNNNNTGG 1 cut(s) 289
AciI CCGC 1 cut(s) 417
AclWI GGATC 5 cut(s) 686, 699, 948, 961, 974
AcsI RAATTY 3 cut(s) 468, 793, 864
AcuI CTGAAG 1 cut(s) 879
AfaI GTAC 1 cut(s) 909
AfiI CCNNNNNNNGG 5 cut(s) 176, 194, 289, 334, 806
AflII CTTAAG 1 cut(s) 266
AflIII ACRYGT 2 cut(s) 91, 919
AgsI TTSAA 4 cut(s) 81, 526, 854, 958
AjnI CCWGG 2 cut(s) 188, 505
AluBI AGCT 5 cut(s) 98, 325, 764, 782, 873
AluI AGCT 5 cut(s) 98, 325, 764, 782, 873
Alw21I GWGCWC 3 cut(s) 487, 829, 847
Alw26I GTCTC 2 cut(s) 133, 344
Alw44I GTGCAC 1 cut(s) 483
AlwI GGATC 5 cut(s) 686, 699, 948, 961, 974
AoxI GGCC 2 cut(s) 118, 167
ApaLI GTGCAC 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 554
ApoI RAATTY 3 cut(s) 468, 793, 864
Asp700I GAANNNNTTC 2 cut(s) 656, 864
AspA2I CCTAGG 1 cut(s) 994
AspS9I GGNCC 1 cut(s) 809
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 20, 316
AvaII GGWCC 1 cut(s) 809
AvrII CCTAGG 1 cut(s) 994
BaeGI GKGCMC 1 cut(s) 487
BamHI GGATCC 2 cut(s) 691, 966
BanI GGYRCC 1 cut(s) 837
Bbv12I GWGCWC 3 cut(s) 487, 829, 847
BbvI GCAGC 1 cut(s) 566
BccI CCATC 2 cut(s) 405, 838
BceAI ACGGC 1 cut(s) 825
BciT130I CCWGG 2 cut(s) 190, 507
BciVI GTATCC 1 cut(s) 707
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 133, 344
BfaI CTAG 2 cut(s) 951, 995
BfrI CTTAAG 1 cut(s) 266
BfuI GTATCC 1 cut(s) 707
BglI GCCNNNNNGGC 1 cut(s) 23
BisI GCNGC 1 cut(s) 555
BlnI CCTAGG 1 cut(s) 994
BlsI GCNGC 1 cut(s) 556
Bme1390I CCNGG 3 cut(s) 23, 190, 507
Bme18I GGWCC 1 cut(s) 809
BmgT120I GGNCC 1 cut(s) 809
BmiI GGNNCC 3 cut(s) 693, 839, 968
BmrFI CCNGG 3 cut(s) 23, 190, 507
BmsI GCATC 3 cut(s) 142, 210, 766
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 305, 496
BpuMI CCSGG 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 115, 188, 994
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 194, 289, 334, 806
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 693
Bse3DI GCAATG 1 cut(s) 548
BseBI CCWGG 2 cut(s) 190, 507
BseDI CCNNGG 3 cut(s) 115, 188, 994
BseGI GGATG 2 cut(s) 757, 990
BseLI CCNNNNNNNGG 5 cut(s) 176, 194, 289, 334, 806
BseMI GCAATG 1 cut(s) 548
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 2 cut(s) 696, 977
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 1 cut(s) 566
BshFI GGCC 2 cut(s) 120, 169
BshNI GGYRCC 1 cut(s) 837
BsiHKAI GWGCWC 3 cut(s) 487, 829, 847
BsiSI CCGG 2 cut(s) 23, 156
BslFI GGGAC 1 cut(s) 607
BslI CCNNNNNNNGG 5 cut(s) 176, 194, 289, 334, 806
BsmAI GTCTC 2 cut(s) 133, 344
BsmFI GGGAC 1 cut(s) 607
BsnI GGCC 2 cut(s) 120, 169
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 3 cut(s) 487, 829, 847
Bsp143I GATC 4 cut(s) 691, 773, 940, 966
BspACI CCGC 1 cut(s) 417
BspANI GGCC 2 cut(s) 120, 169
BspLI GGNNCC 3 cut(s) 693, 839, 968
BspPI GGATC 5 cut(s) 686, 699, 948, 961, 974
BspT107I GGYRCC 1 cut(s) 837
BspTI CTTAAG 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 115, 188, 994
BssMI GATC 4 cut(s) 691, 773, 940, 966
BssT1I CCWWGG 1 cut(s) 994
Bst2UI CCWGG 2 cut(s) 190, 507
Bst4CI ACNGT 4 cut(s) 127, 622, 638, 664
Bst6I CTCTTC 2 cut(s) 239, 647
BstAFI CTTAAG 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 183, 512, 784
BstDEI CTNAG 3 cut(s) 311, 789, 869
BstF5I GGATG 2 cut(s) 757, 990
BstKTI GATC 4 cut(s) 694, 776, 943, 969
BstMAI GTCTC 2 cut(s) 133, 344
BstMBI GATC 4 cut(s) 691, 773, 940, 966
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 2 cut(s) 190, 507
BstNSI RCATGY 4 cut(s) 185, 368, 561, 923
BstSCI CCNGG 3 cut(s) 21, 188, 505
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 566
BstX2I RGATCY 2 cut(s) 691, 966
BstYI RGATCY 2 cut(s) 691, 966
BsuI GTATCC 1 cut(s) 707
BsuRI GGCC 2 cut(s) 120, 169
BtsCI GGATG 2 cut(s) 757, 990
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 3 cut(s) 123, 458, 714
Cac8I GCNNGC 3 cut(s) 183, 512, 784
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 809
Csp6I GTAC 1 cut(s) 908
CviAII CATG 7 cut(s) 182, 365, 397, 558, 834, 920, 1019
CviQI GTAC 1 cut(s) 908
DdeI CTNAG 3 cut(s) 311, 789, 869
DpnI GATC 4 cut(s) 693, 775, 942, 968
DpnII GATC 4 cut(s) 691, 773, 940, 966
Eam1104I CTCTTC 2 cut(s) 239, 647
EarI CTCTTC 2 cut(s) 239, 647
Eco130I CCWWGG 1 cut(s) 994
Eco147I AGGCCT 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 809
Eco57I CTGAAG 1 cut(s) 879
EcoO109I RGGNCCY 1 cut(s) 809
EcoRI GAATTC 2 cut(s) 793, 864
EcoRII CCWGG 2 cut(s) 188, 505
EcoT14I CCWWGG 1 cut(s) 994
ErhI CCWWGG 1 cut(s) 994
FaeI CATG 7 cut(s) 185, 368, 400, 561, 837, 923, 1022
FaqI GGGAC 1 cut(s) 607
FatI CATG 7 cut(s) 181, 364, 396, 557, 833, 919, 1018
FauI CCCGC 1 cut(s) 410
FauNDI CATATG 5 cut(s) 385, 598, 747, 802, 933
Fnu4HI GCNGC 1 cut(s) 555
FokI GGATG 2 cut(s) 744, 977
Fsp4HI GCNGC 1 cut(s) 555
FspBI CTAG 2 cut(s) 951, 995
GluI GCNGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 2 cut(s) 120, 169
HapII CCGG 2 cut(s) 23, 156
Hin1II CATG 7 cut(s) 185, 368, 400, 561, 837, 923, 1022
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 3 cut(s) 307, 421, 738
HpaII CCGG 2 cut(s) 23, 156
HphI GGTGA 2 cut(s) 20, 316
Hpy166II GTNNAC 3 cut(s) 394, 485, 625
Hpy188I TCNGA 6 cut(s) 14, 52, 67, 116, 818, 905
Hpy188III TCNNGA 5 cut(s) 298, 371, 427, 475, 605
Hpy8I GTNNAC 3 cut(s) 394, 485, 625
Hpy99I CGWCG 1 cut(s) 905
HpyAV CCTTC 5 cut(s) 87, 295, 800, 854, 931
HpyCH4III ACNGT 4 cut(s) 127, 622, 638, 664
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 9 cut(s) 185, 201, 257, 443, 485, 554, 707, 786, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 3 cut(s) 311, 789, 869
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 7 cut(s) 185, 368, 400, 561, 837, 923, 1022
Kzo9I GATC 4 cut(s) 691, 773, 940, 966
LmnI GCTCC 4 cut(s) 330, 373, 832, 850
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 3 cut(s) 142, 210, 766
MaeI CTAG 2 cut(s) 951, 995
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 664
MalI GATC 4 cut(s) 693, 775, 942, 968
MboI GATC 4 cut(s) 691, 773, 940, 966
MboII GAAGA 4 cut(s) 103, 226, 664, 998
MflI RGATCY 2 cut(s) 691, 966
MhlI GDGCHC 3 cut(s) 487, 829, 847
MluCI AATT 7 cut(s) 432, 468, 614, 793, 864, 885, 999
MmeI TCCRAC 2 cut(s) 90, 883
MnlI CCTC 8 cut(s) 110, 113, 131, 242, 347, 674, 705, 998
MroXI GAANNNNTTC 2 cut(s) 656, 864
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 835
MspCI CTTAAG 1 cut(s) 266
MspI CCGG 2 cut(s) 23, 156
MspR9I CCNGG 3 cut(s) 23, 190, 507
MvaI CCWGG 2 cut(s) 190, 507
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 23
NdeI CATATG 5 cut(s) 385, 598, 747, 802, 933
NdeII GATC 4 cut(s) 691, 773, 940, 966
NlaIII CATG 7 cut(s) 185, 368, 400, 561, 837, 923, 1022
NlaIV GGNNCC 3 cut(s) 693, 839, 968
NspI RCATGY 4 cut(s) 185, 368, 561, 923
PaeI GCATGC 1 cut(s) 185
PceI AGGCCT 1 cut(s) 120
PciI ACATGT 1 cut(s) 919
PdmI GAANNNNTTC 2 cut(s) 656, 864
PfeI GAWTC 3 cut(s) 307, 421, 738
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 1 cut(s) 556
PpuMI RGGWCCY 1 cut(s) 809
PscI ACATGT 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 809
Psp6I CCWGG 2 cut(s) 188, 505
PspGI CCWGG 2 cut(s) 188, 505
PspN4I GGNNCC 3 cut(s) 693, 839, 968
PspPI GGNCC 1 cut(s) 809
PspPPI RGGWCCY 1 cut(s) 809
PsuI RGATCY 2 cut(s) 691, 966
RsaI GTAC 1 cut(s) 909
RsaNI GTAC 1 cut(s) 908
RseI CAYNNNNRTG 1 cut(s) 835
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 555
Sau3AI GATC 4 cut(s) 691, 773, 940, 966
Sau96I GGNCC 1 cut(s) 809
ScrFI CCNGG 3 cut(s) 23, 190, 507
SduI GDGCHC 3 cut(s) 487, 829, 847
SfaNI GCATC 3 cut(s) 142, 210, 766
SinI GGWCC 1 cut(s) 809
SmiMI CAYNNNNRTG 1 cut(s) 835
SmlI CTYRAG 3 cut(s) 266, 320, 475
SmoI CTYRAG 3 cut(s) 266, 320, 475
SphI GCATGC 1 cut(s) 185
Sse9I AATT 7 cut(s) 432, 468, 614, 793, 864, 885, 999
SseBI AGGCCT 1 cut(s) 120
SsiI CCGC 1 cut(s) 417
SspMI CTAG 2 cut(s) 951, 995
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 21, 188, 505
StyI CCWWGG 1 cut(s) 994
TaaI ACNGT 4 cut(s) 127, 622, 638, 664
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 105
TasI AATT 7 cut(s) 432, 468, 614, 793, 864, 885, 999
TatI WGTACW 1 cut(s) 907
TfiI GAWTC 3 cut(s) 307, 421, 738
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 3 cut(s) 130, 465, 714
TseI GCWGC 1 cut(s) 554
TspDTI ATGAA 5 cut(s) 226, 413, 819, 950, 998
TspRI CASTG 3 cut(s) 130, 465, 714
Van91I CCANNNNNTGG 1 cut(s) 289
Vha464I CTTAAG 1 cut(s) 266
VneI GTGCAC 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 3 cut(s) 468, 793, 864
XceI RCATGY 4 cut(s) 185, 368, 561, 923
XmaJI CCTAGG 1 cut(s) 994
XmnI GAANNNNTTC 2 cut(s) 656, 864
XspI CTAG 2 cut(s) 951, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.