Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003888

Physical Location & Seq

Genomic Coordinates Reverse (-)

16306372 .. 16309956

Gene Structure 3585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG184700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCAAGTTAATATACATGCATGTCAATTGTCAATTTCTTTGCAGAGAATTCCCAAGACCAGTGATGCCATCAAGAAGATTATTCTGAGAACAATAAAGCTTCTCTTTTGGGGAATCATTTTGCAAGGTGGATACTCTCATGCACCCTATGATTTAGCTTATGGAGTTGACATGAAAAAAATTAGATGGTTTGGCATCCTCCAGAGAATAGCATTGGTTTACTGTGTTGTTGCTCTAATAGAGACATTTACCACCAAACTCAGACCAACTGTTCTTGAATCTGGACCGGTCTCTATTTTCACAGCATATAGATGGCAGTGGATTGGAGGATTTGTTGCCTTCCTGGTCTACATGATTACAACATTTTCGCTTTATGTTCCGGATTGGAGTTTTGTGGTACACCACGACGATGGCTCAACAAAGAAATACTTGGTTGAGTGTGGGATGAGAGGACATCTAGGACCTGCTTGCAATGCAGTTGGATACGTGGATCGACAGGTCTGGGGTATAAACCATCTCTACAATCAACCTGTTTGGAGCCGTTTGAAGGCATGCACACTTAGTGCTCCCAGCGCTGGTCCTTTTAGAAAGGGCGCTCCAAGTTGGTGCAGAGCTCCTTTTGAACCAGAAGGCCTTTTGAGTTCCATTTCAGCTATTCTTAGTGGCACGATCGGCATCCATTACGGACACATTTTGATCCACTTCAAGGGTCACGCAGAGAGGCTCAAACAATGGGTCTCAATGGGGCTTGTCTTAATTATCATAGGCATCATTCTACATTTTACAGATGCAATTCCTATCAATAAGCAACTCTACAGCTTCAGCTATGTCTGTTTCACAGCTGGTGCAGCTGGATTAGTTTTCTCTGGGTTTTACGTACTGATTGATGTTTGGGGCTATCGGACGCCATTCTTATTCCTGGAATGGATAGGAATGAATGCAATGCTAGTGTTTGTGATGGCAGCTCAAGGCATCTTTGCAGGCTTCGTAAATGGATGGTACTATGAATCCCCAGACAAAACACTAGTGTATTGGATCCAGGAGCATGTGTTTAACAATGTATGGCACTCAGAGAGGCTAGGAACCCTCTTATATGTCATATTTGCTGAAATTACATTCTGGGGAGTAGTTTCTGGCATATTGCACAAACTCGGAATATATTGGAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624

Protein Analysis

390

Amino Acids

44.2

Weight (kDa)

9.17

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27730 AT5G27730 AT5G27730 AT5G27730 AT5G27730
fragaria_vesca	FvH4_6g06580 FvH4_6g06580 FvH4_6g16610
malus_domestica	MD04G1090600.v1.1 MD04G1200000.v1.1
prunus_persica	Prupe.6G320400_v2.0.a1 Prupe.7G127200_v2.0.a1
pyrus_communis	pycom04g17650
rosa_chinensis	RchiOBHm_Chr3g0455771 RchiOBHm_Chr3g0470581
rosa_laevigata	RLG00000024258 RLG00000024259 RLG00000025333
rosa_multiflora	Rmu_sc0002050.1_g000004 Rmu_sc0002115.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410730 Rroxscaffold_6G00423490 Rroxscaffold_6G00424000
rosa_rugosa	Rorug03G0009800 Rorug03G0110000
rosa_samantha	Rh3BG071900 Rh3BG184700 Rh3CG070200 Rh3CG175200 Rh3DG072600 Rh3DG190000
rosa_wichuraiana	Rw3G005610 Rw3G005960 Rw3G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccI	GTMKAC	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	379
AclWI	GGATC	4 cut(s)	498, 691, 1030, 1043
AcsI	RAATTY	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	805
AcyI	GRCGYC	1 cut(s)	905
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	3 cut(s)	399, 879, 1001
AfeI	AGCGCT	1 cut(s)	574
AfiI	CCNNNNNNNGG	3 cut(s)	547, 575, 706
AgeI	ACCGGT	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	278, 547, 623, 706
AhlI	ACTAGT	1 cut(s)	1024
AjnI	CCWGG	3 cut(s)	342, 918, 1038
AluBI	AGCT	9 cut(s)	100, 158, 614, 653, 819, 825, 842, 851, 965
AluI	AGCT	9 cut(s)	100, 158, 614, 653, 819, 825, 842, 851, 965
Alw21I	GWGCWC	2 cut(s)	568, 616
Alw26I	GTCTC	3 cut(s)	236, 295, 742
AlwI	GGATC	4 cut(s)	498, 691, 1030, 1043
Aor13HI	TCCGGA	1 cut(s)	379
Aor51HI	AGCGCT	1 cut(s)	574
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	2 cut(s)	848, 962
ApoI	RAATTY	1 cut(s)	48
ArsI	GACNNNNNNTTYG	2 cut(s)	720, 752
AsiGI	ACCGGT	1 cut(s)	286
AspLEI	GCGC	2 cut(s)	575, 596
AspS9I	GGNCC	3 cut(s)	284, 461, 578
AvaII	GGWCC	3 cut(s)	284, 461, 578
BamHI	GGATCC	1 cut(s)	1035
BanII	GRGCYC	1 cut(s)	616
Bbv12I	GWGCWC	2 cut(s)	568, 616
BbvI	GCAGC	2 cut(s)	860, 974
BccI	CCATC	7 cut(s)	77, 180, 306, 404, 522, 952, 990
BceAI	ACGGC	1 cut(s)	525
BciT130I	CCWGG	3 cut(s)	344, 920, 1040
BciVI	GTATCC	2 cut(s)	125, 476
BcoDI	GTCTC	3 cut(s)	236, 295, 742
BcuI	ACTAGT	1 cut(s)	1024
BfaI	CTAG	4 cut(s)	458, 947, 1025, 1079
BfmI	CTRYAG	1 cut(s)	814
BfoI	RGCGCY	2 cut(s)	576, 597
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	2 cut(s)	125, 476
BisI	GCNGC	2 cut(s)	849, 963
BlsI	GCNGC	2 cut(s)	850, 964
Bme1390I	CCNGG	3 cut(s)	344, 920, 1040
Bme18I	GGWCC	3 cut(s)	284, 461, 578
BmgT120I	GGNCC	3 cut(s)	284, 461, 578
BmiI	GGNNCC	3 cut(s)	539, 1037, 1084
BmrFI	CCNGG	3 cut(s)	344, 920, 1040
BmsI	GCATC	6 cut(s)	55, 204, 684, 777, 778, 981
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	951
BsaAI	YACGTR	2 cut(s)	487, 877
BsaBI	GATNNNNATC	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	905
BsaI	GGTCTC	2 cut(s)	295, 742
BsaWI	WCCGGW	2 cut(s)	286, 379
BsaXI	ACNNNNNCTCC	4 cut(s)	318, 348, 1034, 1064
Bsc4I	CCNNNNNNNGG	3 cut(s)	547, 575, 706
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	2 cut(s)	478, 948
Bse8I	GATNNNNATC	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	3 cut(s)	344, 920, 1040
BseGI	GGATG	4 cut(s)	195, 450, 675, 1001
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	3 cut(s)	547, 575, 706
BseMI	GCAATG	2 cut(s)	478, 948
BseMII	CTCAG	3 cut(s)	77, 274, 1083
BseNI	ACTGG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	860, 974
BseYI	CCCAGC	1 cut(s)	569
BsgI	GTGCAG	2 cut(s)	628, 867
Bsh1285I	CGRYCG	1 cut(s)	672
BshFI	GGCC	1 cut(s)	633
BshTI	ACCGGT	1 cut(s)	286
BsiEI	CGRYCG	1 cut(s)	672
BsiHKAI	GWGCWC	2 cut(s)	568, 616
BsiSI	CCGG	2 cut(s)	287, 380
BslI	CCNNNNNNNGG	3 cut(s)	547, 575, 706
BsmAI	GTCTC	3 cut(s)	236, 295, 742
BsmI	GAATGC	1 cut(s)	943
BsnI	GGCC	1 cut(s)	633
Bso31I	GGTCTC	2 cut(s)	295, 742
Bsp1286I	GDGCHC	2 cut(s)	568, 616
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	4 cut(s)	490, 669, 696, 1035
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	3 cut(s)	78, 273, 1082
BspEI	TCCGGA	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	539, 1037, 1084
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	4 cut(s)	498, 691, 1030, 1043
BspTNI	GGTCTC	2 cut(s)	295, 742
BsrDI	GCAATG	2 cut(s)	478, 948
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	286
BssMI	GATC	4 cut(s)	490, 669, 696, 1035
BssNI	GRCGYC	1 cut(s)	905
Bst2UI	CCWGG	3 cut(s)	344, 920, 1040
Bst4CI	ACNGT	2 cut(s)	224, 271
BstACI	GRCGYC	1 cut(s)	905
BstBAI	YACGTR	2 cut(s)	487, 877
BstC8I	GCNNGC	3 cut(s)	469, 553, 982
BstDEI	CTNAG	5 cut(s)	86, 260, 560, 659, 1069
BstF5I	GGATG	4 cut(s)	195, 450, 675, 1001
BstH2I	RGCGCY	2 cut(s)	576, 597
BstHHI	GCGC	2 cut(s)	575, 596
BstKTI	GATC	4 cut(s)	493, 672, 699, 1038
BstMAI	GTCTC	3 cut(s)	236, 295, 742
BstMBI	GATC	4 cut(s)	490, 669, 696, 1035
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	4 cut(s)	473, 572, 672, 848
BstNI	CCWGG	3 cut(s)	344, 920, 1040
BstNSI	RCATGY	4 cut(s)	20, 24, 555, 1049
BstSCI	CCNGG	3 cut(s)	342, 918, 1038
BstSFI	CTRYAG	1 cut(s)	814
BstSNI	TACGTA	1 cut(s)	877
BstV1I	GCAGC	2 cut(s)	860, 974
BstX2I	RGATCY	1 cut(s)	1035
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	1035
BsuI	GTATCC	2 cut(s)	125, 476
BsuRI	GGCC	1 cut(s)	633
BtsCI	GGATG	4 cut(s)	195, 450, 675, 1001
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	2 cut(s)	67, 323
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	3 cut(s)	469, 553, 982
CfoI	GCGC	2 cut(s)	575, 596
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	3 cut(s)	284, 461, 578
CseI	GACGC	1 cut(s)	913
Csp6I	GTAC	3 cut(s)	398, 878, 1000
CspAI	ACCGGT	1 cut(s)	286
CviAII	CATG	7 cut(s)	17, 21, 140, 172, 352, 552, 1046
CviQI	GTAC	3 cut(s)	398, 878, 1000
DdeI	CTNAG	5 cut(s)	86, 260, 560, 659, 1069
DpnI	GATC	4 cut(s)	492, 671, 698, 1037
DpnII	GATC	4 cut(s)	490, 669, 696, 1035
DraIII	CACNNNGTG	1 cut(s)	563
Ecl136II	GAGCTC	1 cut(s)	614
Eco105I	TACGTA	1 cut(s)	877
Eco147I	AGGCCT	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	616
Eco31I	GGTCTC	2 cut(s)	295, 742
Eco47I	GGWCC	3 cut(s)	284, 461, 578
Eco47III	AGCGCT	1 cut(s)	574
Eco53kI	GAGCTC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	805
EcoICRI	GAGCTC	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	3 cut(s)	342, 918, 1038
EcoT22I	ATGCAT	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	616
FaeI	CATG	7 cut(s)	20, 24, 143, 175, 355, 555, 1049
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 413, 445
FatI	CATG	7 cut(s)	16, 20, 139, 171, 351, 551, 1045
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	849, 963
FokI	GGATG	4 cut(s)	182, 457, 662, 1008
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	2 cut(s)	849, 963
FspBI	CTAG	4 cut(s)	458, 947, 1025, 1079
GlaI	GCGC	2 cut(s)	574, 595
GluI	GCNGC	2 cut(s)	849, 963
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	185
HaeII	RGCGCY	2 cut(s)	576, 597
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	2 cut(s)	287, 380
HgaI	GACGC	1 cut(s)	913
HhaI	GCGC	2 cut(s)	575, 596
Hin1I	GRCGYC	1 cut(s)	905
Hin1II	CATG	7 cut(s)	20, 24, 143, 175, 355, 555, 1049
Hin6I	GCGC	2 cut(s)	573, 594
HinP1I	GCGC	2 cut(s)	573, 594
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	3 cut(s)	114, 278, 1007
HpaII	CCGG	2 cut(s)	287, 380
Hpy166II	GTNNAC	4 cut(s)	169, 220, 349, 400
Hpy188I	TCNGA	5 cut(s)	87, 263, 903, 1072, 1154
Hpy188III	TCNNGA	5 cut(s)	73, 202, 275, 282, 380
Hpy8I	GTNNAC	4 cut(s)	169, 220, 349, 400
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	3 cut(s)	349, 541, 623
HpyCH4III	ACNGT	2 cut(s)	224, 271
HpyCH4IV	ACGT	2 cut(s)	486, 876
HpyF10VI	GCNNNNNNNGC	4 cut(s)	473, 572, 672, 848
HpyF3I	CTNAG	5 cut(s)	86, 260, 560, 659, 1069
HpySE526I	ACGT	2 cut(s)	486, 876
Hsp92I	GRCGYC	1 cut(s)	905
Hsp92II	CATG	7 cut(s)	20, 24, 143, 175, 355, 555, 1049
HspAI	GCGC	2 cut(s)	573, 594
Kpn2I	TCCGGA	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	490, 669, 696, 1035
LmnI	GCTCC	5 cut(s)	537, 571, 601, 619, 1042
Lsp1109I	GCAGC	2 cut(s)	860, 974
LweI	GCATC	6 cut(s)	55, 204, 684, 777, 778, 981
MaeI	CTAG	4 cut(s)	458, 947, 1025, 1079
MaeII	ACGT	2 cut(s)	486, 876
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	4 cut(s)	492, 671, 698, 1037
MboI	GATC	4 cut(s)	490, 669, 696, 1035
MboII	GAAGA	1 cut(s)	88
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	1 cut(s)	1035
MhlI	GDGCHC	2 cut(s)	568, 616
MluCI	AATT	7 cut(s)	26, 33, 48, 180, 756, 792, 1110
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	6 cut(s)	209, 320, 443, 714, 1068, 1097
Mph1103I	ATGCAT	1 cut(s)	22
MroI	TCCGGA	1 cut(s)	379
MseI	TTAA	3 cut(s)	9, 755, 1053
MslI	CAYNNNNRTG	2 cut(s)	310, 408
MspA1I	CMGCKG	2 cut(s)	842, 851
MspI	CCGG	2 cut(s)	287, 380
MspR9I	CCNGG	3 cut(s)	344, 920, 1040
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	943
MvaI	CCWGG	3 cut(s)	344, 920, 1040
MwoI	GCNNNNNNNGC	4 cut(s)	473, 572, 672, 848
NdeII	GATC	4 cut(s)	490, 669, 696, 1035
NlaIII	CATG	7 cut(s)	20, 24, 143, 175, 355, 555, 1049
NlaIV	GGNNCC	3 cut(s)	539, 1037, 1084
NmuCI	GTSAC	1 cut(s)	710
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	4 cut(s)	20, 24, 555, 1049
PaeI	GCATGC	1 cut(s)	555
PceI	AGGCCT	1 cut(s)	633
PctI	GAATGC	1 cut(s)	943
PfeI	GAWTC	3 cut(s)	114, 278, 1007
PfoI	TCCNGGA	2 cut(s)	918, 1038
PinAI	ACCGGT	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	850, 964
Ple19I	CGATCG	1 cut(s)	672
Ppu21I	YACGTR	2 cut(s)	487, 877
PpuMI	RGGWCCY	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	616
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	3 cut(s)	342, 918, 1038
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	3 cut(s)	342, 918, 1038
PspN4I	GGNNCC	3 cut(s)	539, 1037, 1084
PspPI	GGNCC	3 cut(s)	284, 461, 578
PspPPI	RGGWCCY	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	1035
PvuI	CGATCG	1 cut(s)	672
PvuII	CAGCTG	2 cut(s)	842, 851
RsaI	GTAC	3 cut(s)	399, 879, 1001
RsaNI	GTAC	3 cut(s)	398, 878, 1000
RseI	CAYNNNNRTG	2 cut(s)	310, 408
SacI	GAGCTC	1 cut(s)	616
SaqAI	TTAA	3 cut(s)	9, 755, 1053
SatI	GCNGC	2 cut(s)	849, 963
Sau3AI	GATC	4 cut(s)	490, 669, 696, 1035
Sau96I	GGNCC	3 cut(s)	284, 461, 578
ScrFI	CCNGG	3 cut(s)	344, 920, 1040
SduI	GDGCHC	2 cut(s)	568, 616
SfaNI	GCATC	6 cut(s)	55, 204, 684, 777, 778, 981
SfcI	CTRYAG	1 cut(s)	814
SinI	GGWCC	3 cut(s)	284, 461, 578
SmiMI	CAYNNNNRTG	2 cut(s)	310, 408
SmlI	CTYRAG	1 cut(s)	966
SmoI	CTYRAG	1 cut(s)	966
SnaBI	TACGTA	1 cut(s)	877
SpeI	ACTAGT	1 cut(s)	1024
SphI	GCATGC	1 cut(s)	555
Sse9I	AATT	7 cut(s)	26, 33, 48, 180, 756, 792, 1110
SseBI	AGGCCT	1 cut(s)	633
SspMI	CTAG	4 cut(s)	458, 947, 1025, 1079
SstI	GAGCTC	1 cut(s)	616
StuI	AGGCCT	1 cut(s)	633
StyD4I	CCNGG	3 cut(s)	342, 918, 1038
TaaI	ACNGT	2 cut(s)	224, 271
TaiI	ACGT	2 cut(s)	489, 879
TaqI	TCGA	1 cut(s)	493
TasI	AATT	7 cut(s)	26, 33, 48, 180, 756, 792, 1110
TfiI	GAWTC	3 cut(s)	114, 278, 1007
Tru1I	TTAA	3 cut(s)	9, 755, 1053
Tru9I	TTAA	3 cut(s)	9, 755, 1053
TscAI	CASTG	2 cut(s)	67, 323
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	2 cut(s)	848, 962
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	3 cut(s)	188, 950, 1020
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	2 cut(s)	67, 323
VpaK11BI	GGWCC	3 cut(s)	284, 461, 578
XapI	RAATTY	1 cut(s)	48
XceI	RCATGY	4 cut(s)	20, 24, 555, 1049
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	4 cut(s)	458, 947, 1025, 1079
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.