Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003888

Physical Location & Seq

Genomic Coordinates Forward (+)

3857537 .. 3861268

Gene Structure 3732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06580.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGTTAGTGTGGCGGGCACGCAGCCATGCAGTCTTTCAACACTATCCGGGTGTAGACTGACAGTGACAGTGGACCTATCTTCTTGCAACTTCAATATGGCCGAAATCAAACCCGACACGGCTCACCAACAGTATCTCATCGTGTCGGAACCCGATATTTCCGACCAGAAGCCTTCAAAACCGAAACGTTTAGCTTCCCTTGACATCTTCCGAGGCCTCACTGTTTCTTTGATGATTTTGGTTGATGATGCCGGTGGAGAATGGCCTATGATTGGTCATGCACCCTGGAATGGTTGCAATCTCGCTGACTTTGTGATGCCATTTTTCCTCTTCATTGTGGGAATGTCTATTGCACTCTCTCTCAAGAGGATACCAGACCAACTTTTGGCTGTCAAGAAGGTGATTCTTAGAACTCTCAAGCTCCTTTTCTGGGGTCTCCTGTTACAAGGAGGTTTCTCACATGCTCCTGACAAACTAACATATGGTGTTGACATGAAAGAAATAAGGTGGTGTGGGATTCTCCAGAGAATTGCTCTTGCATATCTGGTAGTGGCTCTGATAGAAATTTTCTTGAGATGCGCACAAAGAAAAGATGTGGCACCTGGCAGGCTCTCCATTTTCAAGTTATACTATTGGCAGTGGCTGGTTGCAGCATGTGTACTCACTACTTACTTTGCTGTTATATATGGGACATATGTTCCTGATTGGCAATTTACCGTCCACGACAGAGACAGTAGTGATTACGGAAAAAGTTTCACTGTATTTTGTGGTGCTAGAGGAAAACTGGATCCTCCTTGTAATGCAGTGGGATACATTGACAGACAAGTGTTGGGAATCAATCATATGTATCAGCATCCAGCTTGGAAAAGATCAAAAGCTTGCACTGAAAATTCCCCATATGAAGGACCTTTCCGAAATGATGCTCCATCATGGTGCCGTGCTCCTTTTGAACCTGAAGGAATTGTAAGCTCAATATCTGCAATTCTCTCCACAATCATCGGAGTACACTTCGGACATGTGCTTATACATATGAAGGGTCATCAAGCTAGATTGAAGCATTGGATCCTTATGGGCTTTGCCCTCCTCATCTTAGGAAATGTTCTTCATTTCACTCATGCAATTCCTTCAAATAAACAGCTATATACATTTAGCTACGTATGCATAACGTCTGGAGCAGCAGCTTTGGTGTTTTCAGCCTTCTACATCATGGTTGATATCTACGATAAAAAGTTCATGTTTCTTCCTCTGGAATGGATTGGCATGAATGCTATGCTTGTCTATGTTATGGCAGCTGAAGGCATCTTTGCAGGATTCTTCAACGGTTGGTATTACAAGGACCCCCATAATACACTAATATATTGGATCCAGAAGCACATTTTTGTTGGGATTTGGCATTCAAGGAGAGTAGGCATTCTGCTCTATGTCCTCTTTGCAGAGATCTTGTTTTGGGGCATTGTTGCTGGCATTTTGCATTGGTTGGGCATATATTGGAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624 DUF5009

Protein Analysis

500

Amino Acids

56.49

Weight (kDa)

8.85

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27730 AT5G27730 AT5G27730 AT5G27730 AT5G27730
fragaria_vesca	FvH4_6g06580 FvH4_6g06580 FvH4_6g16610
malus_domestica	MD04G1090600.v1.1 MD04G1200000.v1.1
prunus_persica	Prupe.6G320400_v2.0.a1 Prupe.7G127200_v2.0.a1
pyrus_communis	pycom04g17650
rosa_chinensis	RchiOBHm_Chr3g0455771 RchiOBHm_Chr3g0470581
rosa_laevigata	RLG00000024258 RLG00000024259 RLG00000025333
rosa_multiflora	Rmu_sc0002050.1_g000004 Rmu_sc0002115.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410730 Rroxscaffold_6G00423490 Rroxscaffold_6G00424000
rosa_rugosa	Rorug03G0009800 Rorug03G0110000
rosa_samantha	Rh3BG071900 Rh3BG184700 Rh3CG070200 Rh3CG175200 Rh3DG072600 Rh3DG190000
rosa_wichuraiana	Rw3G005610 Rw3G005960 Rw3G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	580
AccB1I	GGYRCC	2 cut(s)	598, 933
AccB7I	CCANNNNNTGG	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	1 cut(s)	14
AclI	AACGTT	1 cut(s)	187
AclWI	GGATC	6 cut(s)	782, 795, 1057, 1070, 1357, 1370
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	564, 889
AcuI	CTGAAG	2 cut(s)	975, 1314
AfaI	GTAC	2 cut(s)	660, 1005
AfiI	CCNNNNNNNGG	5 cut(s)	272, 290, 385, 430, 902
AflIII	ACRYGT	1 cut(s)	1015
AgsI	TTSAA	9 cut(s)	39, 94, 177, 622, 950, 1054, 1128, 1318, 1398
AjnI	CCWGG	2 cut(s)	284, 601
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	2 cut(s)	440, 723
AlwI	GGATC	6 cut(s)	782, 795, 1057, 1070, 1357, 1370
AlwNI	CAGNNNCTG	1 cut(s)	643
AoxI	GGCC	3 cut(s)	99, 214, 263
ApeKI	GCWGC	5 cut(s)	22, 650, 1175, 1178, 1289
ApoI	RAATTY	2 cut(s)	564, 889
AspLEI	GCGC	1 cut(s)	581
AspS9I	GGNCC	3 cut(s)	73, 905, 1336
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	116, 412
AvaII	GGWCC	3 cut(s)	73, 905, 1336
BaeGI	GKGCMC	1 cut(s)	20
BamHI	GGATCC	3 cut(s)	787, 1062, 1362
BanI	GGYRCC	2 cut(s)	598, 933
Bbv12I	GWGCWC	1 cut(s)	943
BbvI	GCAGC	5 cut(s)	34, 662, 1187, 1190, 1301
BccI	CCATC	1 cut(s)	934
BceAI	ACGGC	2 cut(s)	135, 921
BciT130I	CCWGG	2 cut(s)	286, 603
BciVI	GTATCC	2 cut(s)	363, 803
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	440, 723
BfaI	CTAG	2 cut(s)	774, 1047
BfuI	GTATCC	2 cut(s)	363, 803
BglII	AGATCT	1 cut(s)	1437
BisI	GCNGC	5 cut(s)	23, 651, 1176, 1179, 1290
BlsI	GCNGC	5 cut(s)	24, 652, 1177, 1180, 1291
Bme1390I	CCNGG	3 cut(s)	49, 286, 603
Bme18I	GGWCC	3 cut(s)	73, 905, 1336
BmgT120I	GGNCC	3 cut(s)	73, 905, 1336
BmiI	GGNNCC	7 cut(s)	150, 600, 789, 935, 1064, 1338, 1364
BmrFI	CCNGG	3 cut(s)	49, 286, 603
BmsI	GCATC	6 cut(s)	238, 306, 566, 862, 910, 1308
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BpmI	CTGGAG	2 cut(s)	506, 1191
BpuEI	CTTGAG	3 cut(s)	347, 401, 592
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	1156
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	211, 284
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 290, 385, 430, 902
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	286, 603
BseDI	CCNNGG	2 cut(s)	211, 284
BseGI	GGATG	1 cut(s)	853
BseLI	CCNNNNNNNGG	5 cut(s)	272, 290, 385, 430, 902
BseNI	ACTGG	1 cut(s)	789
BseRI	GAGGAG	1 cut(s)	1073
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	5 cut(s)	34, 662, 1187, 1190, 1301
BshFI	GGCC	3 cut(s)	101, 216, 265
BshNI	GGYRCC	2 cut(s)	598, 933
BsiHKAI	GWGCWC	1 cut(s)	943
BsiSI	CCGG	2 cut(s)	48, 252
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	5 cut(s)	272, 290, 385, 430, 902
BsmAI	GTCTC	2 cut(s)	440, 723
BsmFI	GGGAC	1 cut(s)	703
BsmI	GAATGC	3 cut(s)	1270, 1393, 1410
BsnI	GGCC	3 cut(s)	101, 216, 265
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	20, 943
Bsp143I	GATC	5 cut(s)	787, 869, 1062, 1362, 1437
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	3 cut(s)	101, 216, 265
BspLI	GGNNCC	7 cut(s)	150, 600, 789, 935, 1064, 1338, 1364
BspPI	GGATC	6 cut(s)	782, 795, 1057, 1070, 1357, 1370
BspT107I	GGYRCC	2 cut(s)	598, 933
BspTNI	GGTCTC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	789
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	211, 284
BssMI	GATC	5 cut(s)	787, 869, 1062, 1362, 1437
Bst2UI	CCWGG	2 cut(s)	286, 603
Bst4CI	ACNGT	8 cut(s)	64, 70, 132, 223, 718, 734, 760, 1322
Bst6I	CTCTTC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	1156
BstC8I	GCNNGC	5 cut(s)	16, 20, 608, 880, 1462
BstDEI	CTNAG	2 cut(s)	407, 1090
BstF5I	GGATG	1 cut(s)	853
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	5 cut(s)	790, 872, 1065, 1365, 1440
BstMAI	GTCTC	2 cut(s)	440, 723
BstMBI	GATC	5 cut(s)	787, 869, 1062, 1362, 1437
BstMWI	GCNNNNNNNGC	1 cut(s)	1158
BstNI	CCWGG	2 cut(s)	286, 603
BstNSI	RCATGY	3 cut(s)	464, 657, 1019
BstSCI	CCNGG	3 cut(s)	47, 284, 601
BstSLI	GKGCMC	1 cut(s)	20
BstSNI	TACGTA	1 cut(s)	1156
BstV1I	GCAGC	5 cut(s)	34, 662, 1187, 1190, 1301
BstX2I	RGATCY	4 cut(s)	787, 1062, 1362, 1437
BstYI	RGATCY	4 cut(s)	787, 1062, 1362, 1437
BsuI	GTATCC	2 cut(s)	363, 803
BsuRI	GGCC	3 cut(s)	101, 216, 265
BtsCI	GGATG	1 cut(s)	853
BtsI	GCAGTG	2 cut(s)	644, 810
BtsIMutI	CAGTG	7 cut(s)	69, 75, 219, 644, 756, 810, 882
Cac8I	GCNNGC	5 cut(s)	16, 20, 608, 880, 1462
CaiI	CAGNNNCTG	1 cut(s)	643
CfoI	GCGC	1 cut(s)	581
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	3 cut(s)	73, 905, 1336
Csp6I	GTAC	2 cut(s)	659, 1004
CviQI	GTAC	2 cut(s)	659, 1004
DdeI	CTNAG	2 cut(s)	407, 1090
DpnI	GATC	5 cut(s)	789, 871, 1064, 1364, 1439
DpnII	GATC	5 cut(s)	787, 869, 1062, 1362, 1437
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco105I	TACGTA	1 cut(s)	1156
Eco147I	AGGCCT	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	440
Eco32I	GATATC	1 cut(s)	1216
Eco47I	GGWCC	3 cut(s)	73, 905, 1336
Eco57I	CTGAAG	2 cut(s)	975, 1314
EcoO109I	RGGNCCY	2 cut(s)	905, 1336
EcoRII	CCWGG	2 cut(s)	284, 601
EcoRV	GATATC	1 cut(s)	1216
EcoT22I	ATGCAT	1 cut(s)	1163
FaqI	GGGAC	1 cut(s)	703
FauI	CCCGC	1 cut(s)	7
FauNDI	CATATG	5 cut(s)	481, 694, 843, 898, 1029
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	5 cut(s)	23, 651, 1176, 1179, 1290
FokI	GGATG	1 cut(s)	840
Fsp4HI	GCNGC	5 cut(s)	23, 651, 1176, 1179, 1290
FspAI	RTGCGCAY	1 cut(s)	580
FspBI	CTAG	2 cut(s)	774, 1047
FspI	TGCGCA	1 cut(s)	580
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	5 cut(s)	23, 651, 1176, 1179, 1290
GsuI	CTGGAG	2 cut(s)	506, 1191
HaeIII	GGCC	3 cut(s)	101, 216, 265
HapII	CCGG	2 cut(s)	48, 252
HhaI	GCGC	1 cut(s)	581
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	876, 1493
HinfI	GANTC	4 cut(s)	403, 517, 834, 1311
HpaII	CCGG	2 cut(s)	48, 252
HphI	GGTGA	2 cut(s)	116, 412
Hpy166II	GTNNAC	6 cut(s)	56, 73, 490, 659, 721, 1006
Hpy188I	TCNGA	7 cut(s)	148, 163, 212, 558, 914, 1001, 1013
Hpy188III	TCNNGA	9 cut(s)	364, 394, 467, 523, 571, 701, 1170, 1247, 1366
Hpy8I	GTNNAC	6 cut(s)	56, 73, 490, 659, 721, 1006
HpyAV	CCTTC	8 cut(s)	183, 391, 896, 950, 1027, 1134, 1207, 1289
HpyCH4III	ACNGT	8 cut(s)	64, 70, 132, 223, 718, 734, 760, 1322
HpyCH4IV	ACGT	3 cut(s)	187, 1155, 1166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1158
HpyF3I	CTNAG	2 cut(s)	407, 1090
HpySE526I	ACGT	3 cut(s)	187, 1155, 1166
HspAI	GCGC	1 cut(s)	579
Kzo9I	GATC	5 cut(s)	787, 869, 1062, 1362, 1437
LmnI	GCTCC	5 cut(s)	426, 469, 928, 946, 1172
Lsp1109I	GCAGC	5 cut(s)	34, 662, 1187, 1190, 1301
LweI	GCATC	6 cut(s)	238, 306, 566, 862, 910, 1308
MaeI	CTAG	2 cut(s)	774, 1047
MaeII	ACGT	3 cut(s)	187, 1155, 1166
MaeIII	GTNAC	2 cut(s)	64, 441
MalI	GATC	5 cut(s)	789, 871, 1064, 1364, 1439
MboI	GATC	5 cut(s)	787, 869, 1062, 1362, 1437
MboII	GAAGA	6 cut(s)	72, 199, 322, 1094, 1232, 1306
MflI	RGATCY	4 cut(s)	787, 1062, 1362, 1437
MhlI	GDGCHC	2 cut(s)	20, 943
MluCI	AATT	7 cut(s)	528, 564, 710, 889, 960, 981, 1119
MmeI	TCCRAC	2 cut(s)	126, 186
Mph1103I	ATGCAT	1 cut(s)	1163
MseI	TTAA	1 cut(s)	1498
MslI	CAYNNNNRTG	1 cut(s)	931
MspA1I	CMGCKG	1 cut(s)	1292
MspI	CCGG	2 cut(s)	48, 252
MspR9I	CCNGG	3 cut(s)	49, 286, 603
Mva1269I	GAATGC	3 cut(s)	1270, 1393, 1410
MvaI	CCWGG	2 cut(s)	286, 603
MwoI	GCNNNNNNNGC	1 cut(s)	1158
NciI	CCSGG	1 cut(s)	49
NdeI	CATATG	5 cut(s)	481, 694, 843, 898, 1029
NdeII	GATC	5 cut(s)	787, 869, 1062, 1362, 1437
NlaIV	GGNNCC	7 cut(s)	150, 600, 789, 935, 1064, 1338, 1364
NmuCI	GTSAC	1 cut(s)	64
NsbI	TGCGCA	1 cut(s)	580
NsiI	ATGCAT	1 cut(s)	1163
NspI	RCATGY	3 cut(s)	464, 657, 1019
PceI	AGGCCT	1 cut(s)	216
PciI	ACATGT	1 cut(s)	1015
PctI	GAATGC	3 cut(s)	1270, 1393, 1410
PfeI	GAWTC	4 cut(s)	403, 517, 834, 1311
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	5 cut(s)	24, 652, 1177, 1180, 1291
Ppu21I	YACGTR	1 cut(s)	1156
PpuMI	RGGWCCY	2 cut(s)	905, 1336
PscI	ACATGT	1 cut(s)	1015
Psp1406I	AACGTT	1 cut(s)	187
Psp5II	RGGWCCY	2 cut(s)	905, 1336
Psp6I	CCWGG	2 cut(s)	284, 601
PspGI	CCWGG	2 cut(s)	284, 601
PspN4I	GGNNCC	7 cut(s)	150, 600, 789, 935, 1064, 1338, 1364
PspPI	GGNCC	3 cut(s)	73, 905, 1336
PspPPI	RGGWCCY	2 cut(s)	905, 1336
PstNI	CAGNNNCTG	1 cut(s)	643
PsuI	RGATCY	4 cut(s)	787, 1062, 1362, 1437
PvuII	CAGCTG	1 cut(s)	1292
RsaI	GTAC	2 cut(s)	660, 1005
RsaNI	GTAC	2 cut(s)	659, 1004
RseI	CAYNNNNRTG	1 cut(s)	931
SaqAI	TTAA	1 cut(s)	1498
SatI	GCNGC	5 cut(s)	23, 651, 1176, 1179, 1290
Sau3AI	GATC	5 cut(s)	787, 869, 1062, 1362, 1437
Sau96I	GGNCC	3 cut(s)	73, 905, 1336
ScrFI	CCNGG	3 cut(s)	49, 286, 603
SduI	GDGCHC	2 cut(s)	20, 943
SfaNI	GCATC	6 cut(s)	238, 306, 566, 862, 910, 1308
SinI	GGWCC	3 cut(s)	73, 905, 1336
SmiMI	CAYNNNNRTG	1 cut(s)	931
SmlI	CTYRAG	3 cut(s)	362, 416, 571
SmoI	CTYRAG	3 cut(s)	362, 416, 571
SnaBI	TACGTA	1 cut(s)	1156
Sse9I	AATT	7 cut(s)	528, 564, 710, 889, 960, 981, 1119
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	774, 1047
StuI	AGGCCT	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	47, 284, 601
TaaI	ACNGT	8 cut(s)	64, 70, 132, 223, 718, 734, 760, 1322
TaiI	ACGT	3 cut(s)	190, 1158, 1169
TasI	AATT	7 cut(s)	528, 564, 710, 889, 960, 981, 1119
TatI	WGTACW	2 cut(s)	658, 1003
TfiI	GAWTC	4 cut(s)	403, 517, 834, 1311
Tru1I	TTAA	1 cut(s)	1498
Tru9I	TTAA	1 cut(s)	1498
TscAI	CASTG	7 cut(s)	69, 75, 226, 644, 763, 810, 889
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	5 cut(s)	22, 650, 1175, 1178, 1289
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	7 cut(s)	322, 509, 915, 1046, 1094, 1222, 1277
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	7 cut(s)	69, 75, 226, 644, 763, 810, 889
Van91I	CCANNNNNTGG	1 cut(s)	385
VpaK11BI	GGWCC	3 cut(s)	73, 905, 1336
XapI	RAATTY	2 cut(s)	564, 889
XceI	RCATGY	3 cut(s)	464, 657, 1019
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	2 cut(s)	774, 1047
Zsp2I	ATGCAT	1 cut(s)	1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.