Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003888

Physical Location & Seq

Genomic Coordinates Reverse (-)

28363582 .. 28367558

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G320400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGCCGAAATCAAAGCCGATACGACCACTCACCACCACCATCTCAACTTGTCGGAACCCGATATTTCGGACCACAAGCCTTCCAAGCCGAAACGTGTCGCTTCCCTAGACATCTTTCGTGGCCTCACTGTTTCGCTGATGATTTTGGTTGACGATGCTGGTGGAGAGTGGCCTGTGATTGGGCATGCGCCATGGAATGGCTGCAACCTTGCTGACTTTGTAATGCCATTCTTCTTGTTCATTGTGGGCATGGCCATTGCACTTTCTCTCAAGAGAATACCAGACCAACTTTTAGCTGTCAAGAGGGTGATTCTTAGAACTCTCAAGCTTCTGTTCTGGGGTGTCCTATTACAAGGAGGTTTCTTACATGATCCTGACAAATTAACATATGGTGTTGACATGAAAGAAATAAGATGGTGTGGGATTCTCCAGAGAATTGCTCTTGCATATCTGGTAGTGGCTTTGATAGAAATTTTCTCCAGAGGTGCACAAACCAAAAATATGGCACCCAGCAGGTTCTCCATATTCAAATTATACTATTGGCATTGGCTGGCGGCAGCATGTGTTCTCACTATTTACTTTGCTGTAATTTATGGGACATATGTTCCTGATTGGCAATTTACTGTCCTTTACAGAGAGAGTATTGATTATGGGAAAAGTTTCACTGTAGCTTGTGGCGTGAGAGGAAAACTAGATCCTCCTTGTAATGCAGTAGGATATATTGATAGAGAAGTGTTGGGAATCAATCACATGTATCCGCGTCCAGCTTGGAAAAGATCTAAAGCTTGCACTGAGAATTCCCCATATGCAGGACCATTTCGACATGACGCTCCATCATGGTGCCATGCTCCTTTTGAACCTGAAGGAATTGTAAGCTCTATATCTGCAATTCTCTCCACAATCATTGGAGTACACTTTGGTCATGTGCTTATACAAATGAAGGGTCATCCAGCCAGACTGAAGCATTGGATCCCAGTGGGCTGTGCTCTCCTCGTCTTAGGAATTATTCTTCATTTCACTCATGCAATTCCTTCAAACAAACAGCTATATACATTTAGCTATGTATGTATAACATCTGGAGCAGCAGCTTTGGTGTATTCAGCCTTCTACATTCTGGTTGATATCTGGGGTATAAAGTACCTGTTCCTGCCACTGGAATGGATCGGCATGAACGCTATGCTTGTGTATGTTATGGCAGCTGAAGGCATCTTTGCAGGATTCATTAACGGGTGGTATTACGAGGACCCCCATAACACGCTAATATATTGGATTCAAAAGCACATTTTCGTGGGGGTTTGGCATTCGAGGAGAGTAGGCATTCTGCTCTACGTCCTCTTTGCAGAGATCTTATTTTGGGGCATTGTTGCTGGCATTTTGCATCGGCTGGGCATATATTGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624 DUF5009

Protein Analysis

469

Amino Acids

53.01

Weight (kDa)

8.88

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27730 AT5G27730 AT5G27730 AT5G27730 AT5G27730
fragaria_vesca	FvH4_6g06580 FvH4_6g06580 FvH4_6g16610
malus_domestica	MD04G1090600.v1.1 MD04G1200000.v1.1
prunus_persica	Prupe.6G320400_v2.0.a1 Prupe.7G127200_v2.0.a1
pyrus_communis	pycom04g17650
rosa_chinensis	RchiOBHm_Chr3g0455771 RchiOBHm_Chr3g0470581
rosa_laevigata	RLG00000024258 RLG00000024259 RLG00000025333
rosa_multiflora	Rmu_sc0002050.1_g000004 Rmu_sc0002115.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410730 Rroxscaffold_6G00423490 Rroxscaffold_6G00424000
rosa_rugosa	Rorug03G0009800 Rorug03G0110000
rosa_samantha	Rh3BG071900 Rh3BG184700 Rh3CG070200 Rh3CG175200 Rh3DG072600 Rh3DG190000
rosa_wichuraiana	Rw3G005610 Rw3G005960 Rw3G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	504
AccB1I	GGYRCC	2 cut(s)	505, 840
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccII	CGCG	1 cut(s)	760
AciI	CCGC	2 cut(s)	554, 758
AclWI	GGATC	5 cut(s)	365, 689, 964, 977, 1169
AcoI	YGGCCR	2 cut(s)	3, 252
AcsI	RAATTY	2 cut(s)	471, 796
AcuI	CTGAAG	3 cut(s)	882, 980, 1221
AfaI	GTAC	2 cut(s)	912, 1139
AfiI	CCNNNNNNNGG	4 cut(s)	179, 197, 809, 1153
AflIII	ACRYGT	2 cut(s)	94, 750
AgsI	TTSAA	4 cut(s)	529, 857, 1035, 1274
Alw21I	GWGCWC	2 cut(s)	490, 988
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	5 cut(s)	365, 689, 964, 977, 1169
AoxI	GGCC	4 cut(s)	3, 121, 170, 252
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	5 cut(s)	201, 557, 1082, 1085, 1196
ApoI	RAATTY	2 cut(s)	471, 796
ArsI	GACNNNNNNTTYG	2 cut(s)	928, 960
Asp700I	GAANNNNTTC	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	3 cut(s)	70, 812, 1243
AsuHPI	GGTGA	2 cut(s)	23, 319
AvaII	GGWCC	3 cut(s)	70, 812, 1243
BaeGI	GKGCMC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	969
BanI	GGYRCC	2 cut(s)	505, 840
BarI	GAAGNNNNNNTAC	2 cut(s)	1088, 1120
Bbv12I	GWGCWC	2 cut(s)	490, 988
BbvI	GCAGC	5 cut(s)	188, 569, 1094, 1097, 1208
BccI	CCATC	3 cut(s)	48, 408, 841
BciVI	GTATCC	1 cut(s)	765
BfaI	CTAG	2 cut(s)	107, 692
BfmI	CTRYAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	765
BglII	AGATCT	2 cut(s)	776, 1344
BisI	GCNGC	6 cut(s)	202, 555, 558, 1083, 1086, 1197
BlsI	GCNGC	6 cut(s)	203, 556, 559, 1084, 1087, 1198
Bme18I	GGWCC	3 cut(s)	70, 812, 1243
BmgT120I	GGNCC	3 cut(s)	70, 812, 1243
BmiI	GGNNCC	5 cut(s)	57, 507, 842, 971, 1245
BmrI	ACTGGG	1 cut(s)	968
BmsI	GCATC	3 cut(s)	145, 1215, 1387
BmuI	ACTGGG	1 cut(s)	968
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpmI	CTGGAG	3 cut(s)	413, 463, 1098
BpuEI	CTTGAG	2 cut(s)	254, 308
BsaJI	CCNNGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 197, 809, 1153
Bse1I	ACTGG	2 cut(s)	974, 1158
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	946
BseLI	CCNNNNNNNGG	4 cut(s)	179, 197, 809, 1153
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	2 cut(s)	974, 1158
BseRI	GAGGAG	2 cut(s)	980, 1321
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	5 cut(s)	188, 569, 1094, 1097, 1208
BseYI	CCCAGC	2 cut(s)	509, 1384
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	4 cut(s)	5, 123, 172, 254
BshNI	GGYRCC	2 cut(s)	505, 840
BsiHKAI	GWGCWC	2 cut(s)	490, 988
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	4 cut(s)	179, 197, 809, 1153
BsmFI	GGGAC	1 cut(s)	610
BsmI	GAATGC	2 cut(s)	1300, 1317
BsnI	GGCC	4 cut(s)	5, 123, 172, 254
Bsp1286I	GDGCHC	2 cut(s)	490, 988
Bsp143I	GATC	6 cut(s)	370, 694, 776, 969, 1161, 1344
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	2 cut(s)	554, 758
BspANI	GGCC	4 cut(s)	5, 123, 172, 254
BspCNI	CTCAG	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	760
BspLI	GGNNCC	5 cut(s)	57, 507, 842, 971, 1245
BspMI	ACCTGC	1 cut(s)	504
BspPI	GGATC	5 cut(s)	365, 689, 964, 977, 1169
BspT107I	GGYRCC	2 cut(s)	505, 840
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	974, 1158
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	6 cut(s)	370, 694, 776, 969, 1161, 1344
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	3 cut(s)	130, 625, 667
BstC8I	GCNNGC	4 cut(s)	186, 552, 787, 1369
BstDEI	CTNAG	3 cut(s)	314, 792, 997
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	946
BstFNI	CGCG	1 cut(s)	760
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	6 cut(s)	373, 697, 779, 972, 1164, 1347
BstMBI	GATC	6 cut(s)	370, 694, 776, 969, 1161, 1344
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNSI	RCATGY	3 cut(s)	188, 564, 754
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	5 cut(s)	188, 569, 1094, 1097, 1208
BstX2I	RGATCY	4 cut(s)	694, 776, 969, 1344
BstXI	CCANNNNNNTGG	2 cut(s)	502, 1158
BstYI	RGATCY	4 cut(s)	694, 776, 969, 1344
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	4 cut(s)	5, 123, 172, 254
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	946
BtsIMutI	CAGTG	5 cut(s)	126, 663, 789, 981, 1151
BveI	ACCTGC	1 cut(s)	504
Cac8I	GCNNGC	4 cut(s)	186, 552, 787, 1369
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	3 cut(s)	70, 812, 1243
CseI	GACGC	2 cut(s)	749, 836
Csp6I	GTAC	2 cut(s)	911, 1138
CspCI	CAANNNNNGTGG	2 cut(s)	886, 921
CviQI	GTAC	2 cut(s)	911, 1138
DdeI	CTNAG	3 cut(s)	314, 792, 997
DpnI	GATC	6 cut(s)	372, 696, 778, 971, 1163, 1346
DpnII	GATC	6 cut(s)	370, 694, 776, 969, 1161, 1344
EaeI	YGGCCR	2 cut(s)	3, 252
Eco130I	CCWWGG	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	1123
Eco47I	GGWCC	3 cut(s)	70, 812, 1243
Eco57I	CTGAAG	3 cut(s)	882, 980, 1221
EcoO109I	RGGNCCY	1 cut(s)	1243
EcoRI	GAATTC	1 cut(s)	796
EcoRV	GATATC	1 cut(s)	1123
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
FaqI	GGGAC	1 cut(s)	610
FauNDI	CATATG	3 cut(s)	388, 601, 805
Fnu4HI	GCNGC	6 cut(s)	202, 555, 558, 1083, 1086, 1197
FokI	GGATG	1 cut(s)	933
Fsp4HI	GCNGC	6 cut(s)	202, 555, 558, 1083, 1086, 1197
FspBI	CTAG	2 cut(s)	107, 692
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	6 cut(s)	202, 555, 558, 1083, 1086, 1197
GsaI	CCCAGC	2 cut(s)	513, 1388
GsuI	CTGGAG	3 cut(s)	413, 463, 1098
HaeIII	GGCC	4 cut(s)	5, 123, 172, 254
HgaI	GACGC	2 cut(s)	749, 836
HhaI	GCGC	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	2 cut(s)	151, 397
HindII	GTYRAC	2 cut(s)	151, 397
HindIII	AAGCTT	2 cut(s)	326, 783
HinfI	GANTC	5 cut(s)	310, 424, 741, 1218, 1270
HphI	GGTGA	2 cut(s)	23, 319
Hpy166II	GTNNAC	4 cut(s)	151, 397, 488, 913
Hpy188I	TCNGA	2 cut(s)	55, 70
Hpy188III	TCNNGA	7 cut(s)	271, 301, 374, 430, 480, 608, 1077
Hpy8I	GTNNAC	4 cut(s)	151, 397, 488, 913
HpyAV	CCTTC	6 cut(s)	90, 857, 934, 1041, 1114, 1196
HpyCH4III	ACNGT	3 cut(s)	130, 625, 667
HpyCH4IV	ACGT	2 cut(s)	94, 1329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	3 cut(s)	314, 792, 997
HpySE526I	ACGT	2 cut(s)	94, 1329
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	6 cut(s)	370, 694, 776, 969, 1161, 1344
LmnI	GCTCC	3 cut(s)	835, 853, 1079
Lsp1109I	GCAGC	5 cut(s)	188, 569, 1094, 1097, 1208
LweI	GCATC	3 cut(s)	145, 1215, 1387
MaeI	CTAG	2 cut(s)	107, 692
MaeII	ACGT	2 cut(s)	94, 1329
MalI	GATC	6 cut(s)	372, 696, 778, 971, 1163, 1346
MboI	GATC	6 cut(s)	370, 694, 776, 969, 1161, 1344
MboII	GAAGA	2 cut(s)	223, 1001
MflI	RGATCY	4 cut(s)	694, 776, 969, 1344
MhlI	GDGCHC	2 cut(s)	490, 988
MlsI	TGGCCA	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	33
Mox20I	TGGCCA	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	659
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	2 cut(s)	383, 1224
MslI	CAYNNNNRTG	3 cut(s)	838, 1156, 1286
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	1199
Mva1269I	GAATGC	2 cut(s)	1300, 1317
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	191
NdeI	CATATG	3 cut(s)	388, 601, 805
NdeII	GATC	6 cut(s)	370, 694, 776, 969, 1161, 1344
NlaIV	GGNNCC	5 cut(s)	57, 507, 842, 971, 1245
NspI	RCATGY	3 cut(s)	188, 564, 754
PaeI	GCATGC	1 cut(s)	188
PciI	ACATGT	1 cut(s)	750
PctI	GAATGC	2 cut(s)	1300, 1317
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	5 cut(s)	310, 424, 741, 1218, 1270
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	6 cut(s)	203, 556, 559, 1084, 1087, 1198
PpuMI	RGGWCCY	1 cut(s)	1243
PscI	ACATGT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	1243
PspFI	CCCAGC	2 cut(s)	509, 1384
PspN4I	GGNNCC	5 cut(s)	57, 507, 842, 971, 1245
PspPI	GGNCC	3 cut(s)	70, 812, 1243
PspPPI	RGGWCCY	1 cut(s)	1243
PsuI	RGATCY	4 cut(s)	694, 776, 969, 1344
PvuII	CAGCTG	1 cut(s)	1199
RsaI	GTAC	2 cut(s)	912, 1139
RsaNI	GTAC	2 cut(s)	911, 1138
RseI	CAYNNNNRTG	3 cut(s)	838, 1156, 1286
SaqAI	TTAA	2 cut(s)	383, 1224
SatI	GCNGC	6 cut(s)	202, 555, 558, 1083, 1086, 1197
Sau3AI	GATC	6 cut(s)	370, 694, 776, 969, 1161, 1344
Sau96I	GGNCC	3 cut(s)	70, 812, 1243
SduI	GDGCHC	2 cut(s)	490, 988
SfaNI	GCATC	3 cut(s)	145, 1215, 1387
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	3 cut(s)	70, 812, 1243
SmiMI	CAYNNNNRTG	3 cut(s)	838, 1156, 1286
SmlI	CTYRAG	2 cut(s)	269, 323
SmoI	CTYRAG	2 cut(s)	269, 323
SphI	GCATGC	1 cut(s)	188
SsiI	CCGC	2 cut(s)	554, 758
SspMI	CTAG	2 cut(s)	107, 692
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	3 cut(s)	130, 625, 667
TaiI	ACGT	2 cut(s)	97, 1332
TaqI	TCGA	2 cut(s)	820, 1304
TatI	WGTACW	1 cut(s)	910
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	5 cut(s)	310, 424, 741, 1218, 1270
Tru1I	TTAA	2 cut(s)	383, 1224
Tru9I	TTAA	2 cut(s)	383, 1224
TscAI	CASTG	5 cut(s)	133, 670, 796, 981, 1158
TseI	GCWGC	5 cut(s)	201, 557, 1082, 1085, 1196
TspDTI	ATGAA	6 cut(s)	229, 416, 953, 1001, 1184, 1210
TspRI	CASTG	5 cut(s)	133, 670, 796, 981, 1158
Van91I	CCANNNNNTGG	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	486
VpaK11BI	GGWCC	3 cut(s)	70, 812, 1243
XapI	RAATTY	2 cut(s)	471, 796
XceI	RCATGY	3 cut(s)	188, 564, 754
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	2 cut(s)	107, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.