Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003888

Physical Location & Seq

Genomic Coordinates Reverse (-)

10529175 .. 10531012

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATCGAAACGCATCAACCAATTCGTTTTATATACCCTTTTAAGTTCCCTGTCCAAGGATTTAAGGATTCACTATTAATTTGCTTCTTACAATCCAGGATTGGAGGATTTGTTGCCTTCTTGGTCTACATGATTACAACATTTTCGCTATACATTCCGGATTGGAGCTTTGTAAAACACTATGACGATGGATCAACCAAGAAATACTTGGTTAAGTGTGGGATGAGAGGACATCTAGGACCTGCTTGCAATGCAGTCGGATACGTGGATCGACAGGTCTGGGGCATAAACCATCTCTACAACCAACCTGTATGGATCCGTTTGAAGGCATGCACACTTAGTTCTCCTAGCACTGGTCCATTGAGAAAGGGCGCTCCAAGTTGGTGCAGGGCTCCTTTTGAACCAGAAGGCCTTTTGAGTTCGATTTCAGCTATTCTTAGTGGCACAATCGGCATCCATTATGGGCACATTTTGATCCACTTCAAGGGTCACGCAGAGAGGCTCAAACAATGGGTCTCAATGGGGCTTGTGTTAATGATCATAGCCATCATTCTACATTTTACAGATGCAATTCCAATCAATAAGCAACTCTACAGCTTCAGCTATGTTTGTTTCACAGCCGGTGCAGCTGGATTAGTTTTCTCTGGATTTTACTTACTGATTGATGTTTGGGGATATCGGACTCCATTCTTATTCCTGGAGTGGATAGGAATGAATGCAATGCTAGTGTTTGTGATGGCAGCTCAGGGAATCTTTGCAGGATTCGTAAATGGGTGGTACTATGAAACCCAAGACAAAACACTAGTGTACTGGATCCAGGAGCATGTCTTTAACAATGTATGGCACTCAGAGAGGCTAGGAACCCTCTTATATGTCATATTTGCTGAAATTACATTCTGGGCAGTAGTTTCTGGCATCTTGCACAAACTCGGAATATATTGGAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624

Protein Analysis

317

Amino Acids

36.08

Weight (kDa)

9.02

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27730 AT5G27730 AT5G27730 AT5G27730 AT5G27730
fragaria_vesca	FvH4_6g06580 FvH4_6g06580 FvH4_6g16610
malus_domestica	MD04G1090600.v1.1 MD04G1200000.v1.1
prunus_persica	Prupe.6G320400_v2.0.a1 Prupe.7G127200_v2.0.a1
pyrus_communis	pycom04g17650
rosa_chinensis	RchiOBHm_Chr3g0455771 RchiOBHm_Chr3g0470581
rosa_laevigata	RLG00000024258 RLG00000024259 RLG00000025333
rosa_multiflora	Rmu_sc0002050.1_g000004 Rmu_sc0002115.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410730 Rroxscaffold_6G00423490 Rroxscaffold_6G00424000
rosa_rugosa	Rorug03G0009800 Rorug03G0110000
rosa_samantha	Rh3BG071900 Rh3BG184700 Rh3CG070200 Rh3CG175200 Rh3DG072600 Rh3DG190000
rosa_wichuraiana	Rw3G005610 Rw3G005960 Rw3G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	157
AclWI	GGATC	7 cut(s)	199, 276, 310, 323, 469, 808, 821
AcuI	CTGAAG	1 cut(s)	583
AfaI	GTAC	2 cut(s)	779, 809
AfiI	CCNNNNNNNGG	4 cut(s)	56, 325, 353, 484
AgsI	TTSAA	3 cut(s)	325, 401, 484
AhlI	ACTAGT	1 cut(s)	802
AjnI	CCWGG	3 cut(s)	95, 696, 816
AluBI	AGCT	7 cut(s)	168, 431, 597, 603, 629, 743, 946
AluI	AGCT	7 cut(s)	168, 431, 597, 603, 629, 743, 946
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	7 cut(s)	199, 276, 310, 323, 469, 808, 821
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	2 cut(s)	626, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	498, 530
AseI	ATTAAT	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	239, 356
AvaII	GGWCC	2 cut(s)	239, 356
BaeGI	GKGCMC	1 cut(s)	468
BamHI	GGATCC	2 cut(s)	315, 813
BanII	GRGCYC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	638, 752
BccI	CCATC	4 cut(s)	182, 300, 554, 730
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	3 cut(s)	97, 698, 818
BciVI	GTATCC	1 cut(s)	254
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	520
BcuI	ACTAGT	1 cut(s)	802
BfaI	CTAG	5 cut(s)	236, 348, 725, 803, 857
BfmI	CTRYAG	2 cut(s)	592, 947
BfoI	RGCGCY	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	250
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	2 cut(s)	627, 741
BlsI	GCNGC	2 cut(s)	628, 742
Bme1390I	CCNGG	3 cut(s)	97, 698, 818
Bme18I	GGWCC	2 cut(s)	239, 356
BmgT120I	GGNCC	2 cut(s)	239, 356
BmiI	GGNNCC	4 cut(s)	317, 393, 815, 862
BmrFI	CCNGG	3 cut(s)	97, 698, 818
BmsI	GCATC	4 cut(s)	22, 462, 556, 924
BpmI	CTGGAG	1 cut(s)	719
Bpu10I	CCTNAGC	1 cut(s)	744
BsaAI	YACGTR	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 325, 353, 484
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	2 cut(s)	358, 815
Bse3DI	GCAATG	2 cut(s)	256, 726
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	3 cut(s)	97, 698, 818
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	228, 453
BseLI	CCNNNNNNNGG	4 cut(s)	56, 325, 353, 484
BseMI	GCAATG	2 cut(s)	256, 726
BseMII	CTCAG	2 cut(s)	758, 861
BseNI	ACTGG	2 cut(s)	358, 815
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	2 cut(s)	638, 752
BsgI	GTGCAG	2 cut(s)	406, 645
BshFI	GGCC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	158, 621
BslI	CCNNNNNNNGG	4 cut(s)	56, 325, 353, 484
BsmAI	GTCTC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	1 cut(s)	411
Bso31I	GGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	394, 468
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	7 cut(s)	3, 191, 268, 315, 474, 537, 813
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	2 cut(s)	757, 860
BspEI	TCCGGA	1 cut(s)	157
BspLI	GGNNCC	4 cut(s)	317, 393, 815, 862
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	7 cut(s)	199, 276, 310, 323, 469, 808, 821
BspTNI	GGTCTC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	256, 726
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	358, 815
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	7 cut(s)	3, 191, 268, 315, 474, 537, 813
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	3 cut(s)	97, 698, 818
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	247, 331
BstDEI	CTNAG	4 cut(s)	338, 437, 744, 847
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	228, 453
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	7 cut(s)	6, 194, 271, 318, 477, 540, 816
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	7 cut(s)	3, 191, 268, 315, 474, 537, 813
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 450, 626
BstNI	CCWGG	3 cut(s)	97, 698, 818
BstNSI	RCATGY	2 cut(s)	333, 827
BstSCI	CCNGG	3 cut(s)	95, 696, 816
BstSFI	CTRYAG	2 cut(s)	592, 947
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	2 cut(s)	638, 752
BstX2I	RGATCY	2 cut(s)	315, 813
BstYI	RGATCY	2 cut(s)	315, 813
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	228, 453
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	247, 331
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	2 cut(s)	239, 356
Csp6I	GTAC	2 cut(s)	778, 808
CviAII	CATG	3 cut(s)	130, 330, 824
CviQI	GTAC	2 cut(s)	778, 808
DdeI	CTNAG	4 cut(s)	338, 437, 744, 847
DpnI	GATC	7 cut(s)	5, 193, 270, 317, 476, 539, 815
DpnII	GATC	7 cut(s)	3, 191, 268, 315, 474, 537, 813
Eco130I	CCWWGG	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	677
Eco47I	GGWCC	2 cut(s)	239, 356
Eco57I	CTGAAG	1 cut(s)	583
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	95, 696, 816
EcoRV	GATATC	1 cut(s)	677
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	133, 333, 827
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	3 cut(s)	129, 329, 823
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	627, 741
FokI	GGATG	2 cut(s)	235, 440
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	627, 741
FspBI	CTAG	5 cut(s)	236, 348, 725, 803, 857
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	2 cut(s)	627, 741
GsuI	CTGGAG	1 cut(s)	719
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	2 cut(s)	158, 621
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	133, 333, 827
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	4 cut(s)	68, 682, 750, 762
HpaII	CCGG	2 cut(s)	158, 621
Hpy166II	GTNNAC	2 cut(s)	127, 808
Hpy188I	TCNGA	4 cut(s)	260, 681, 850, 932
Hpy188III	TCNNGA	2 cut(s)	158, 645
Hpy8I	GTNNAC	2 cut(s)	127, 808
HpyAV	CCTTC	3 cut(s)	127, 319, 401
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	9 cut(s)	249, 254, 333, 387, 569, 626, 719, 758, 922
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 450, 626
HpyF3I	CTNAG	4 cut(s)	338, 437, 744, 847
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	133, 333, 827
HspAI	GCGC	1 cut(s)	372
Kpn2I	TCCGGA	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	7 cut(s)	3, 191, 268, 315, 474, 537, 813
LmnI	GCTCC	4 cut(s)	165, 379, 397, 820
Lsp1109I	GCAGC	2 cut(s)	638, 752
LweI	GCATC	4 cut(s)	22, 462, 556, 924
MaeI	CTAG	5 cut(s)	236, 348, 725, 803, 857
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	7 cut(s)	5, 193, 270, 317, 476, 539, 815
MboI	GATC	7 cut(s)	3, 191, 268, 315, 474, 537, 813
MflI	RGATCY	2 cut(s)	315, 813
MhlI	GDGCHC	2 cut(s)	394, 468
MluCI	AATT	4 cut(s)	21, 78, 570, 888
MlyI	GAGTC	1 cut(s)	676
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	5 cut(s)	98, 221, 492, 846, 875
MroI	TCCGGA	1 cut(s)	157
MseI	TTAA	6 cut(s)	42, 63, 77, 213, 533, 831
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	2 cut(s)	158, 621
MspR9I	CCNGG	3 cut(s)	97, 698, 818
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	3 cut(s)	97, 698, 818
MwoI	GCNNNNNNNGC	3 cut(s)	251, 450, 626
NdeII	GATC	7 cut(s)	3, 191, 268, 315, 474, 537, 813
NlaIII	CATG	3 cut(s)	133, 333, 827
NlaIV	GGNNCC	4 cut(s)	317, 393, 815, 862
NmuCI	GTSAC	1 cut(s)	488
NspI	RCATGY	2 cut(s)	333, 827
PaeI	GCATGC	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	411
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	3 cut(s)	68, 750, 762
PfoI	TCCNGGA	3 cut(s)	95, 696, 816
PkrI	GCNGC	2 cut(s)	628, 742
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Ppu21I	YACGTR	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	239
PshBI	ATTAAT	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	3 cut(s)	95, 696, 816
PspGI	CCWGG	3 cut(s)	95, 696, 816
PspN4I	GGNNCC	4 cut(s)	317, 393, 815, 862
PspPI	GGNCC	2 cut(s)	239, 356
PspPPI	RGGWCCY	1 cut(s)	239
PsuI	RGATCY	2 cut(s)	315, 813
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	779, 809
RsaNI	GTAC	2 cut(s)	778, 808
SaqAI	TTAA	6 cut(s)	42, 63, 77, 213, 533, 831
SatI	GCNGC	2 cut(s)	627, 741
Sau3AI	GATC	7 cut(s)	3, 191, 268, 315, 474, 537, 813
Sau96I	GGNCC	2 cut(s)	239, 356
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	3 cut(s)	97, 698, 818
SduI	GDGCHC	2 cut(s)	394, 468
SfaNI	GCATC	4 cut(s)	22, 462, 556, 924
SfcI	CTRYAG	2 cut(s)	592, 947
SinI	GGWCC	2 cut(s)	239, 356
SpeI	ACTAGT	1 cut(s)	802
SphI	GCATGC	1 cut(s)	333
Sse9I	AATT	4 cut(s)	21, 78, 570, 888
SseBI	AGGCCT	1 cut(s)	411
SspMI	CTAG	5 cut(s)	236, 348, 725, 803, 857
StuI	AGGCCT	1 cut(s)	411
StyD4I	CCNGG	3 cut(s)	95, 696, 816
StyI	CCWWGG	1 cut(s)	55
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	3 cut(s)	6, 271, 422
TasI	AATT	4 cut(s)	21, 78, 570, 888
TatI	WGTACW	1 cut(s)	807
TfiI	GAWTC	3 cut(s)	68, 750, 762
Tru1I	TTAA	6 cut(s)	42, 63, 77, 213, 533, 831
Tru9I	TTAA	6 cut(s)	42, 63, 77, 213, 533, 831
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	2 cut(s)	626, 740
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	728, 798
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	239, 356
VspI	ATTAAT	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	54
XceI	RCATGY	2 cut(s)	333, 827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	5 cut(s)	236, 348, 725, 803, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.