AT5G30490

craniofacial development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009635
Physical Location & Seq
Forward (+)
11611787 .. 11614536
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G30490.1

Sequence Viewer

Length: 711 bp
ATGGGATCTCATGAGCAATCGCCTGAGAATAACGGTTCGAGCACTGTATCGAAGAAAGTTGCTGATATTTGGCAACGAATGAACGAAGGAGTTCCAAATAAACGTGTCAATTTCGTCTCAACCGCTTTGCCCGCTAAAAACTCAGCTAATAGCAATTGGAAAAGTTATCTCGGTGTGAATGTGAAGAAGAAGGATACTTGTGTTTCTGATGTACAGAAGAGTGTTTTGAATCATAGCTGTAGTGAGGAGGCTAAGAGTATTGCTGCAGCCGCTTTAGCTGCGGTGCGAAACGCAACTGTAACGGCTGCAGCTGCATCGAGCCGGGGCAAGATTGAGATAACCGAGGTCAAAGATTTTGCGGGTCAAGAAATCGAAGTAAAGCGGTTAGTTGAAGCGGATTCAAAGGAAGCATTGGAGAGGGGAAACAAAGGCTCCTCTTCCTCCTCAGCAGCGCCTTCAGCGGTTGATGCGGTTCTTGAGCAGATAAAAAAGAAACAAAAGCTGAGTGTTTTGGACAAGACGAAGAAAGATTGGGGAGAGTATAAGGAAGAACACAAAGGTGTTGAAGACGAGCTAGATAAGTACAAGAAAAGCTCGGATCAGTATCTCGACAAAGTTGGTTTCTTGGAGAGAGCTGATTACAGACAGTTTGAGAAAGAGAGAGACGCTCGTTTAGCTCTTCAGTCCAAGAGAAGACACGATGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

236

Amino Acids

26.06

Weight (kDa)

8.98

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 153 - 225 3.8e-25 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 123, 132, 270, 281, 359, 382, 395, 461, 470
AclWI GGATC 2 cut(s) 13, 606
AcuI CTGAAG 2 cut(s) 441, 665
AfaI GTAC 2 cut(s) 213, 584
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 4 cut(s) 229, 392, 402, 566
AleI CACNNNNGTG 1 cut(s) 558
AluBI AGCT 9 cut(s) 146, 237, 278, 311, 502, 574, 594, 635, 677
AluI AGCT 9 cut(s) 146, 237, 278, 311, 502, 574, 594, 635, 677
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 121, 657
AlwI GGATC 2 cut(s) 13, 606
ApeKI GCWGC 7 cut(s) 263, 266, 278, 305, 308, 311, 449
Asp700I GAANNNNTTC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 323
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BbsI GAAGAC 2 cut(s) 573, 700
Bbv12I GWGCWC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 445
BbvI GCAGC 7 cut(s) 250, 265, 278, 292, 298, 320, 461
BceAI ACGGC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BciVI GTATCC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 121, 657
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 3 cut(s) 238, 264, 306
BfoI RGCGCY 1 cut(s) 455
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 8 cut(s) 264, 267, 270, 279, 306, 309, 312, 450
BlsI GCNGC 8 cut(s) 265, 268, 271, 280, 307, 310, 313, 451
Bme1390I CCNGG 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 323, 457
BpiI GAAGAC 2 cut(s) 573, 700
BplI GAGNNNNNCTC 2 cut(s) 652, 684
Bpu10I CCTNAGC 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 322, 342
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bse8I GATNNNNATC 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 322, 342
BseJI GATNNNNATC 1 cut(s) 603
BseMII CTCAG 4 cut(s) 15, 156, 459, 494
BseRI GAGGAG 3 cut(s) 260, 424, 433
BseXI GCAGC 7 cut(s) 250, 265, 278, 292, 298, 320, 461
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 121, 657
BsmBI CGTCTC 2 cut(s) 121, 657
Bsp1286I GDGCHC 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 2 cut(s) 5, 598
BspACI CCGC 9 cut(s) 123, 132, 270, 281, 359, 382, 395, 461, 470
BspCNI CTCAG 4 cut(s) 16, 155, 458, 495
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 433
BspMAI CTGCAG 2 cut(s) 268, 310
BspPI GGATC 2 cut(s) 13, 606
BspQI GCTCTTC 1 cut(s) 684
BsrGI TGTACA 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 322, 342
BssMI GATC 2 cut(s) 5, 598
Bst4CI ACNGT 4 cut(s) 35, 46, 298, 648
Bst6I CTCTTC 3 cut(s) 212, 442, 684
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 5 cut(s) 24, 142, 252, 445, 503
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 2 cut(s) 8, 601
BstMAI GTCTC 2 cut(s) 121, 657
BstMBI GATC 2 cut(s) 5, 598
BstMWI GCNNNNNNNGC 8 cut(s) 131, 269, 275, 278, 311, 458, 467, 674
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 3 cut(s) 238, 264, 306
BstV1I GCAGC 7 cut(s) 250, 265, 278, 292, 298, 320, 461
BstV2I GAAGAC 2 cut(s) 573, 700
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 10
CfoI GCGC 1 cut(s) 454
CseI GACGC 1 cut(s) 674
Csp6I GTAC 2 cut(s) 212, 583
CviAII CATG 1 cut(s) 11
CviQI GTAC 2 cut(s) 212, 583
DdeI CTNAG 5 cut(s) 24, 142, 252, 445, 503
DpnI GATC 2 cut(s) 7, 600
DpnII GATC 2 cut(s) 5, 598
Eam1104I CTCTTC 3 cut(s) 212, 442, 684
EarI CTCTTC 3 cut(s) 212, 442, 684
Eco57I CTGAAG 2 cut(s) 441, 665
Esp3I CGTCTC 2 cut(s) 121, 657
FaeI CATG 1 cut(s) 14
FaiI YATR 4 cut(s) 12, 234, 543, 709
FatI CATG 1 cut(s) 10
FauI CCCGC 2 cut(s) 139, 352
Fnu4HI GCNGC 8 cut(s) 264, 267, 270, 279, 306, 309, 312, 450
Fsp4HI GCNGC 8 cut(s) 264, 267, 270, 279, 306, 309, 312, 450
FspBI CTAG 1 cut(s) 575
GlaI GCGC 1 cut(s) 453
GluI GCNGC 8 cut(s) 264, 267, 270, 279, 306, 309, 312, 450
HaeII RGCGCY 1 cut(s) 455
HapII CCGG 1 cut(s) 322
HgaI GACGC 1 cut(s) 674
HhaI GCGC 1 cut(s) 454
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HinfI GANTC 2 cut(s) 229, 398
HpaII CCGG 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 208, 598
Hpy188III TCNNGA 4 cut(s) 11, 365, 476, 608
HpyAV CCTTC 3 cut(s) 80, 184, 465
HpyCH4III ACNGT 4 cut(s) 35, 46, 298, 648
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 266, 308, 314
HpyF10VI GCNNNNNNNGC 8 cut(s) 131, 269, 275, 278, 311, 458, 467, 674
HpyF3I CTNAG 5 cut(s) 24, 142, 252, 445, 503
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 452
Kzo9I GATC 2 cut(s) 5, 598
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 1 cut(s) 437
LpnPI CCDG 2 cut(s) 36, 335
Lsp1109I GCAGC 7 cut(s) 250, 265, 278, 292, 298, 320, 461
LweI GCATC 2 cut(s) 323, 457
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 7, 600
MboI GATC 2 cut(s) 5, 598
MfeI CAATTG 1 cut(s) 154
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 2 cut(s) 109, 154
MnlI CCTC 7 cut(s) 238, 241, 337, 411, 445, 451, 454
MroXI GAANNNNTTC 1 cut(s) 90
MslI CAYNNNNRTG 2 cut(s) 558, 702
MspA1I CMGCKG 2 cut(s) 311, 461
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 323
MunI CAATTG 1 cut(s) 154
MwoI GCNNNNNNNGC 8 cut(s) 131, 269, 275, 278, 311, 458, 467, 674
NciI CCSGG 1 cut(s) 323
NdeII GATC 2 cut(s) 5, 598
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 433
OliI CACNNNNGTG 1 cut(s) 558
PagI TCATGA 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 684
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 229, 398
PkrI GCNGC 8 cut(s) 265, 268, 271, 280, 307, 310, 313, 451
PspN4I GGNNCC 1 cut(s) 433
PstI CTGCAG 2 cut(s) 268, 310
PsuI RGATCY 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 2 cut(s) 213, 584
RsaNI GTAC 2 cut(s) 212, 583
RseI CAYNNNNRTG 2 cut(s) 558, 702
SapI GCTCTTC 1 cut(s) 684
SatI GCNGC 8 cut(s) 264, 267, 270, 279, 306, 309, 312, 450
Sau3AI GATC 2 cut(s) 5, 598
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 2 cut(s) 323, 457
SfcI CTRYAG 3 cut(s) 238, 264, 306
SmiMI CAYNNNNRTG 2 cut(s) 558, 702
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 2 cut(s) 109, 154
SsiI CCGC 9 cut(s) 123, 132, 270, 281, 359, 382, 395, 461, 470
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 4 cut(s) 35, 46, 298, 648
TaiI ACGT 1 cut(s) 106
TaqI TCGA 5 cut(s) 38, 50, 317, 372, 609
TasI AATT 2 cut(s) 109, 154
TatI WGTACW 2 cut(s) 211, 582
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 229, 398
TscAI CASTG 1 cut(s) 49
TseI GCWGC 7 cut(s) 263, 266, 278, 305, 308, 311, 449
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.