Rh4DG269700

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009635
Physical Location & Seq
Forward (+)
49011890 .. 49020081
8192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG269700.1

Sequence Viewer

Length: 666 bp
ATGAATAAAGGAATATCTACTAAGAATTTCAAGGATTTATTAAAGAAATCTCATTCACCTGCGAATAAAACTCCAAAGAAGGCATCGTCTGATGGTTGGAAGGCATATCTCGGCCTGGCACCAAAGAAGACAGAATCCCCAAAAGAAGATCTATCACAGAAGGGATTAAGTGTCGCACAGAACAACACTACTGATATTGTCATGCAGGACAGCTCTAGTGAGAATGCCAGGAAGCTAGCTGCTGCTGCCCTCGTAGAAGTTAAGGATGCTGGAGCTGCAGTATTGGGTAGAGGGAAAGTTGAGATCACAGAGGTCCGGGACTTTGCCGGTCAACAAATTGAAGTTAAGAAGCTTGTTGACGCTGATTCAAAGGAAGCAACTGAAAAGGCGAAAGCTCATGCACCTTCAGCTGTTGATGCCGTGCTTGAACAGATCAAGAAGAAACAAAAGCTCAGTGTGCTCGACAAAACCAAAAAGGACTGGGGAGAGTTTAAGGAAGAAAAAGGGTTGGATGAGGAGTTGGATGCCTACAAGAAGAGTTCAAACCAATATCTAGACAAGGTTTCCTTCTTGGAGCGAGCAGATTACCGGGAGTTTGAACGGGAGAGGGATGCACGACTGGCTGTGCAGGCCAAAAGGAGGCCTGATATGAGGGAGGGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

221

Amino Acids

24.56

Weight (kDa)

9.27

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 136 - 207 7.3e-26 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 67
AccB1I GGYRCC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 639
AgsI TTSAA 6 cut(s) 31, 341, 369, 428, 543, 599
AjnI CCWGG 2 cut(s) 114, 227
AluBI AGCT 8 cut(s) 213, 235, 239, 275, 352, 395, 410, 451
AluI AGCT 8 cut(s) 213, 235, 239, 275, 352, 395, 410, 451
Alw21I GWGCWC 1 cut(s) 462
AoxI GGCC 3 cut(s) 112, 630, 641
ApeKI GCWGC 4 cut(s) 239, 242, 245, 275
ApoI RAATTY 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 313, 659
AsuC2I CCSGG 2 cut(s) 317, 590
AsuHPI GGTGA 1 cut(s) 48
AsuNHI GCTAGC 1 cut(s) 235
AvaII GGWCC 2 cut(s) 313, 659
BanI GGYRCC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 4 cut(s) 226, 229, 232, 262
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 116, 229
BcnI CCSGG 2 cut(s) 317, 590
BfaI CTAG 3 cut(s) 216, 236, 554
BfmI CTRYAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 67
BglII AGATCT 1 cut(s) 148
BisI GCNGC 4 cut(s) 240, 243, 246, 276
BlsI GCNGC 4 cut(s) 241, 244, 247, 277
Bme1390I CCNGG 4 cut(s) 116, 229, 317, 590
Bme18I GGWCC 2 cut(s) 313, 659
BmgT120I GGNCC 2 cut(s) 313, 659
BmiI GGNNCC 2 cut(s) 120, 660
BmrFI CCNGG 4 cut(s) 116, 229, 317, 590
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 5 cut(s) 92, 256, 406, 514, 601
BmtI GCTAGC 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 317, 590
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 639
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 485, 624
BseBI CCWGG 2 cut(s) 116, 229
BseGI GGATG 4 cut(s) 271, 517, 529, 616
BseLI CCNNNNNNNGG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 466
BseNI ACTGG 2 cut(s) 485, 624
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 4 cut(s) 226, 229, 232, 262
BsgI GTGCAG 1 cut(s) 647
BshFI GGCC 3 cut(s) 114, 632, 643
BshNI GGYRCC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 3 cut(s) 316, 327, 589
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 639
BsmFI GGGAC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 3 cut(s) 114, 632, 643
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 3 cut(s) 148, 303, 432
BspANI GGCC 3 cut(s) 114, 632, 643
BspCNI CTCAG 1 cut(s) 465
BspLI GGNNCC 2 cut(s) 120, 660
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 67
BspOI GCTAGC 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 485, 624
BssAI RCCGGY 1 cut(s) 326
BssMI GATC 3 cut(s) 148, 303, 432
Bst2UI CCWGG 2 cut(s) 116, 229
Bst6I CTCTTC 1 cut(s) 530
BstC8I GCNNGC 3 cut(s) 237, 579, 630
BstDEI CTNAG 2 cut(s) 21, 452
BstF5I GGATG 4 cut(s) 271, 517, 529, 616
BstKTI GATC 3 cut(s) 151, 306, 435
BstMBI GATC 3 cut(s) 148, 303, 432
BstMWI GCNNNNNNNGC 7 cut(s) 245, 275, 407, 416, 457, 620, 629
BstNI CCWGG 2 cut(s) 116, 229
BstSCI CCNGG 4 cut(s) 114, 227, 315, 588
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 4 cut(s) 226, 229, 232, 262
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 3 cut(s) 114, 632, 643
BtsCI GGATG 4 cut(s) 271, 517, 529, 616
BtsIMutI CAGTG 1 cut(s) 460
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 3 cut(s) 237, 579, 630
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 313, 659
CseI GACGC 1 cut(s) 368
CviAII CATG 2 cut(s) 202, 398
DdeI CTNAG 2 cut(s) 21, 452
DpnI GATC 3 cut(s) 150, 305, 434
DpnII GATC 3 cut(s) 148, 303, 432
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Eco147I AGGCCT 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 313, 659
Eco57I CTGAAG 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 114, 227
FaeI CATG 2 cut(s) 205, 401
FaiI YATR 5 cut(s) 106, 203, 399, 650, 664
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 1 cut(s) 332
FatI CATG 2 cut(s) 201, 397
Fnu4HI GCNGC 4 cut(s) 240, 243, 246, 276
FokI GGATG 4 cut(s) 278, 524, 536, 623
Fsp4HI GCNGC 4 cut(s) 240, 243, 246, 276
FspBI CTAG 3 cut(s) 216, 236, 554
GluI GCNGC 4 cut(s) 240, 243, 246, 276
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 3 cut(s) 114, 632, 643
HapII CCGG 3 cut(s) 316, 327, 589
HgaI GACGC 1 cut(s) 368
Hin1II CATG 2 cut(s) 205, 401
HincII GTYRAC 2 cut(s) 332, 358
HindII GTYRAC 2 cut(s) 332, 358
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 2 cut(s) 134, 365
HpaII CCGG 3 cut(s) 316, 327, 589
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 332, 358
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 436, 554
Hpy8I GTNNAC 2 cut(s) 332, 358
HpyAV CCTTC 5 cut(s) 73, 94, 154, 414, 577
HpyCH4V TGCA 5 cut(s) 205, 278, 401, 614, 628
HpyF10VI GCNNNNNNNGC 7 cut(s) 245, 275, 407, 416, 457, 620, 629
HpyF3I CTNAG 2 cut(s) 21, 452
Hsp92II CATG 2 cut(s) 205, 401
Kzo9I GATC 3 cut(s) 148, 303, 432
LmnI GCTCC 2 cut(s) 272, 574
Lsp1109I GCAGC 4 cut(s) 226, 229, 232, 262
LweI GCATC 5 cut(s) 92, 256, 406, 514, 601
MaeI CTAG 3 cut(s) 216, 236, 554
MalI GATC 3 cut(s) 150, 305, 434
MboI GATC 3 cut(s) 148, 303, 432
MboII GAAGA 5 cut(s) 139, 158, 451, 509, 547
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 2 cut(s) 25, 336
MmeI TCCRAC 3 cut(s) 77, 489, 501
MnlI CCTC 8 cut(s) 260, 284, 304, 508, 600, 633, 645, 649
MseI TTAA 5 cut(s) 41, 167, 261, 345, 492
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 3 cut(s) 316, 327, 589
MspR9I CCNGG 4 cut(s) 116, 229, 317, 590
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 2 cut(s) 116, 229
MwoI GCNNNNNNNGC 7 cut(s) 245, 275, 407, 416, 457, 620, 629
NciI CCSGG 2 cut(s) 317, 590
NdeII GATC 3 cut(s) 148, 303, 432
NheI GCTAGC 1 cut(s) 235
NlaIII CATG 2 cut(s) 205, 401
NlaIV GGNNCC 2 cut(s) 120, 660
NmeAIII GCCGAG 1 cut(s) 90
PaqCI CACCTGC 1 cut(s) 67
PceI AGGCCT 1 cut(s) 643
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 2 cut(s) 134, 365
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 4 cut(s) 241, 244, 247, 277
Psp6I CCWGG 2 cut(s) 114, 227
PspGI CCWGG 2 cut(s) 114, 227
PspN4I GGNNCC 2 cut(s) 120, 660
PspPI GGNCC 2 cut(s) 313, 659
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 410
SaqAI TTAA 5 cut(s) 41, 167, 261, 345, 492
SatI GCNGC 4 cut(s) 240, 243, 246, 276
Sau3AI GATC 3 cut(s) 148, 303, 432
Sau96I GGNCC 2 cut(s) 313, 659
ScrFI CCNGG 4 cut(s) 116, 229, 317, 590
SduI GDGCHC 1 cut(s) 462
SfaNI GCATC 5 cut(s) 92, 256, 406, 514, 601
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 2 cut(s) 313, 659
Sse9I AATT 2 cut(s) 25, 336
SseBI AGGCCT 1 cut(s) 643
SspMI CTAG 3 cut(s) 216, 236, 554
StuI AGGCCT 1 cut(s) 643
StyD4I CCNGG 4 cut(s) 114, 227, 315, 588
TaqI TCGA 1 cut(s) 462
TasI AATT 2 cut(s) 25, 336
TfiI GAWTC 2 cut(s) 134, 365
Tru1I TTAA 5 cut(s) 41, 167, 261, 345, 492
Tru9I TTAA 5 cut(s) 41, 167, 261, 345, 492
TscAI CASTG 1 cut(s) 460
TseI GCWGC 4 cut(s) 239, 242, 245, 275
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 313, 659
XapI RAATTY 1 cut(s) 25
XbaI TCTAGA 1 cut(s) 553
XspI CTAG 3 cut(s) 216, 236, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.