MD16G1145900.v1.1

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0009635
Physical Location & Seq
Reverse (-)
11395820 .. 11397434
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1145900.v1.1.491

Sequence Viewer

Length: 666 bp
ATGAATAAAGGAGTATCTAATAAGCAATTCAAGGATTTATTAAACAAGTCTTCTTCATCTGTGAATAAAACTCCAAAGAAGTCATCTAATAATTGGTTGGGATATCTGGGCCTAGCACAAAAGAAGGCAGAGTCCCCAAAAGAAGATGCATTACGGAAGAGATCAAGTGTCTCGCCGAACAGCTCCGGTGACAATGGTGTGCAGGATAAATCTAATGACGAGGCCAGGAGGCTTGTTGCTGCTGCTTTTGTAGAAGTTAAGGATGCTGCAGTTGCAACATCTGGCAGAGGGAAAGTTGAGATCACGGAGGTTCGGGATTTTGCTGGTCAAGAAATTGAATATAAGAAGCGTGTCGATGCTGATTCAAAGGAAACATCCGAAAGGGTGAAAGCTCCTGCACCTTCAGGTGTCGATGCTTTCCTCGAACAGATTAAGAAGAAGCCAAAGCTCAGTGTGCTTGACAAAACGAAAAAGGACTGGGGGGGGGTGTTTAAAGAAGAGAAAGGGTTGGAGGGAGAGTTGGAATCTTACAAGAAGAGTTCAAACCAATATTTAGACAAGGTAAACTTCTTGCAGCGAGCAGATTTCCGAGAGTTTGAACGGGAGAGGGATGCACGGCTGGCCGTGCAGGCCAAAAGGAAGCCAGATATGCGGGAGGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

222

Amino Acids

24.76

Weight (kDa)

9.52

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 134 - 207 1.1e-24 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 652
AclWI GGATC 1 cut(s) 653
AcoI YGGCCR 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 387
AgsI TTSAA 5 cut(s) 31, 338, 366, 543, 599
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 183, 392, 448
AluI AGCT 3 cut(s) 183, 392, 448
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 653
AoxI GGCC 4 cut(s) 109, 222, 621, 630
ApeKI GCWGC 4 cut(s) 239, 242, 266, 574
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 200, 397
BamHI GGATCC 1 cut(s) 658
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 4 cut(s) 226, 229, 253, 586
BceAI ACGGC 2 cut(s) 608, 632
BciT130I CCWGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 267
BglI GCCNNNNNGGC 1 cut(s) 629
BisI GCNGC 4 cut(s) 240, 243, 267, 575
BlsI GCNGC 4 cut(s) 241, 244, 268, 576
Bme1390I CCNGG 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 660
BmrFI CCNGG 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 5 cut(s) 136, 253, 346, 403, 601
BmuI ACTGGG 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bse1I ACTGG 1 cut(s) 482
BseBI CCWGG 1 cut(s) 226
BseGI GGATG 3 cut(s) 268, 374, 616
BseMII CTCAG 1 cut(s) 463
BseNI ACTGG 1 cut(s) 482
BseXI GCAGC 4 cut(s) 226, 229, 253, 586
BsgI GTGCAG 3 cut(s) 221, 381, 647
BshFI GGCC 4 cut(s) 111, 224, 623, 632
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 4 cut(s) 111, 224, 623, 632
Bsp143I GATC 3 cut(s) 161, 300, 658
BspACI CCGC 1 cut(s) 652
BspANI GGCC 4 cut(s) 111, 224, 623, 632
BspCNI CTCAG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 660
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 1 cut(s) 653
BsrI ACTGG 1 cut(s) 482
BssMI GATC 3 cut(s) 161, 300, 658
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 3 cut(s) 152, 492, 530
BstC8I GCNNGC 3 cut(s) 579, 621, 630
BstDEI CTNAG 1 cut(s) 449
BstF5I GGATG 3 cut(s) 268, 374, 616
BstKTI GATC 3 cut(s) 164, 303, 661
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 161, 300, 658
BstMWI GCNNNNNNNGC 6 cut(s) 272, 454, 620, 625, 629, 649
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 4 cut(s) 226, 229, 253, 586
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BsuRI GGCC 4 cut(s) 111, 224, 623, 632
BtsCI GGATG 3 cut(s) 268, 374, 616
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 3 cut(s) 579, 621, 630
Cfr13I GGNCC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 449
DpnI GATC 3 cut(s) 163, 302, 660
DpnII GATC 3 cut(s) 161, 300, 658
DraI TTTAAA 1 cut(s) 493
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 3 cut(s) 152, 492, 530
EarI CTCTTC 3 cut(s) 152, 492, 530
Eco32I GATATC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 224
EcoRV GATATC 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 151
FaiI YATR 3 cut(s) 342, 650, 664
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 1 cut(s) 118
FauI CCCGC 1 cut(s) 645
Fnu4HI GCNGC 4 cut(s) 240, 243, 267, 575
FokI GGATG 3 cut(s) 275, 361, 623
Fsp4HI GCNGC 4 cut(s) 240, 243, 267, 575
FspBI CTAG 1 cut(s) 113
GluI GCNGC 4 cut(s) 240, 243, 267, 575
HaeIII GGCC 4 cut(s) 111, 224, 623, 632
HapII CCGG 1 cut(s) 186
HinfI GANTC 3 cut(s) 131, 362, 524
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 200, 397
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 2 cut(s) 379, 590
Hpy188III TCNNGA 2 cut(s) 314, 329
Hpy8I GTNNAC 1 cut(s) 565
HpyAV CCTTC 2 cut(s) 118, 411
HpyCH4V TGCA 8 cut(s) 149, 202, 269, 275, 398, 574, 614, 628
HpyF10VI GCNNNNNNNGC 6 cut(s) 272, 454, 620, 625, 629, 649
HpyF3I CTNAG 1 cut(s) 449
Kzo9I GATC 3 cut(s) 161, 300, 658
LmnI GCTCC 2 cut(s) 188, 397
Lsp1109I GCAGC 4 cut(s) 226, 229, 253, 586
LweI GCATC 5 cut(s) 136, 253, 346, 403, 601
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 188
MalI GATC 3 cut(s) 163, 302, 660
MboI GATC 3 cut(s) 161, 300, 658
MboII GAAGA 7 cut(s) 42, 45, 155, 169, 448, 509, 547
MflI RGATCY 1 cut(s) 658
MluCI AATT 3 cut(s) 26, 91, 333
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 489, 501
MnlI CCTC 8 cut(s) 214, 222, 281, 301, 431, 505, 600, 649
Mph1103I ATGCAT 1 cut(s) 151
MseI TTAA 4 cut(s) 41, 258, 432, 492
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 6 cut(s) 272, 454, 620, 625, 629, 649
NdeII GATC 3 cut(s) 161, 300, 658
NlaIV GGNNCC 1 cut(s) 660
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 151
PfeI GAWTC 2 cut(s) 362, 524
PkrI GCNGC 4 cut(s) 241, 244, 268, 576
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 660
PspPI GGNCC 1 cut(s) 109
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 658
SaqAI TTAA 4 cut(s) 41, 258, 432, 492
SatI GCNGC 4 cut(s) 240, 243, 267, 575
Sau3AI GATC 3 cut(s) 161, 300, 658
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 226
SetI ASST 7 cut(s) 185, 312, 394, 403, 409, 450, 564
SfaNI GCATC 5 cut(s) 136, 253, 346, 403, 601
SfcI CTRYAG 1 cut(s) 267
SfiI GGCCNNNNNGGCC 1 cut(s) 629
Sse9I AATT 3 cut(s) 26, 91, 333
SsiI CCGC 1 cut(s) 652
SspI AATATT 1 cut(s) 551
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 224
TaqI TCGA 3 cut(s) 354, 411, 423
TasI AATT 3 cut(s) 26, 91, 333
TfiI GAWTC 2 cut(s) 362, 524
Tru1I TTAA 4 cut(s) 41, 258, 432, 492
Tru9I TTAA 4 cut(s) 41, 258, 432, 492
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 4 cut(s) 239, 242, 266, 574
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 17, 45
TspGWI ACGGA 2 cut(s) 169, 320
TspRI CASTG 1 cut(s) 457
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.