Rorug04G0210100

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009635
Physical Location & Seq
Forward (+)
36594184 .. 36595696
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0210100.1

Sequence Viewer

Length: 1176 bp
ATGGTCGACACTGGTGATAGCGAAGTCTTCAGTGATGGAGTTGCCTTTTTCCTATCTCCCGTGGGCTATCAGTTTCCGCCAGACTTGTCAGTTGGTGGTCTAGGACTCTTCAACACCCACGCCAGTACTCTTAATGCTTCCCAAAGCCAAGTTTTGTTTACGCCGATTGGAATGCTAGAATCATCTCGGGGAAGCTTGGTAATGCATGGACAACTTACAACGCTACTGCCAACAACCTTACTGTGTTTTAGACGTTCACTGAGAAATTTAACCCTGCGTTTTTGGGGAATGCTTCTTCTATCACTTACCATGTTGTTGCGAAAGCTTCTTCCTGAATGGGTTACAATCGGTTTTTCTGCTTCAAGTGGAGAATTCTCTGAGCGGCATGTCATAAGTTCATGGGAATTCAATTCAACTTTGGTTGATAACGATATTAATAGAAGAGGCAAAATCAAGCAGAAGAAGAAGAAGAAGACATTCTTGATATTGGTCATTGCAATTCCTGGCTTCACTCTGATGCTTGGTGTCATCGTATGTTGCGAATTAGTTGCTGCTACGGACAATTTTGCAAGCGATAGAAGGCTAGGTCAAGGAGGATCCAGACAGGTATATAAAGGACTCCTACAAGATCTTGGAGGTTGCACAGTTGCTGTGAAGAGAATCTTTGCAGAATCTAATCAGCAATATGAGAAGGTCTTCATTAATGAAGTCAAAATCATAAGCCGCGTAATCCATCGAAACCTGGTGCAGTTCATTGGATGGTGTCATGAGCAGGGCGAATGCTTACTTGTTTATGCATACATGCCTAACACCAGCCTTGACACCCACCTATTTGGCACAGAACAACCCTTCAATGGGATAACAGCTCGTGGATCCCCTGTTCAGGACTCAGACAAGAGGAGTAGTAGGACTTTTGTATACATGGCCCCAGAATATGCTAATGAAGGAAGGGCTAGTAAGGAATCTGACATGTTTAGTTTTGGAGTTGTAGCCTTGGAAATTGCATGTGGAAGGAAGACATACCAACACGGAGAATATCACTTGCCACTTTTTAGTTGGGTTTGCCAGTTGCACCTTGCAGGAAATCTTCTTGATGCAGCTGATGAAAGATTAGAAATGAATTATAATGAAAATGAAATGAGATGCCTATTGATTATTGGACTATGGTGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

391

Amino Acids

43.82

Weight (kDa)

7.09

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 99 - 146 1e-08 Legume lectin domain
Pkinase PF00069 191 - 277 1.2e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 192 - 282 1.5e-13 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 298 - 343 2.7e-06 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 301 - 345 7.7e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1125
AccBSI CCGCTC 1 cut(s) 382
AccI GTMKAC 2 cut(s) 6, 918
AccII CGCG 1 cut(s) 726
AciI CCGC 3 cut(s) 77, 382, 724
AclWI GGATC 4 cut(s) 591, 604, 867, 880
AcsI RAATTY 3 cut(s) 265, 371, 404
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 3 cut(s) 854, 855, 883
AflIII ACRYGT 1 cut(s) 969
AgsI TTSAA 5 cut(s) 112, 363, 409, 414, 853
AjnI CCWGG 2 cut(s) 502, 741
AloI GAACNNNNNNTCC 2 cut(s) 864, 896
AluBI AGCT 4 cut(s) 195, 325, 866, 1100
AluI AGCT 4 cut(s) 195, 325, 866, 1100
AlwI GGATC 4 cut(s) 591, 604, 867, 880
AlwNI CAGNNNCTG 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 1 cut(s) 924
ApeKI GCWGC 2 cut(s) 551, 1097
ApoI RAATTY 3 cut(s) 265, 371, 404
AseI ATTAAT 2 cut(s) 435, 702
Asp700I GAANNNNTTC 2 cut(s) 476, 695
AspS9I GGNCC 1 cut(s) 925
AsuHPI GGTGA 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 186
BamHI GGATCC 2 cut(s) 596, 872
BauI CACGAG 1 cut(s) 867
BbsI GAAGAC 4 cut(s) 19, 479, 688, 1022
BbvI GCAGC 2 cut(s) 538, 1109
BccI CCATC 3 cut(s) 29, 741, 753
BcgI CGANNNNNNTGC 4 cut(s) 154, 188, 530, 564
BciT130I CCWGG 2 cut(s) 504, 743
BfaI CTAG 4 cut(s) 101, 176, 584, 954
BglII AGATCT 1 cut(s) 628
BisI GCNGC 4 cut(s) 383, 552, 724, 1098
BlsI GCNGC 4 cut(s) 384, 553, 725, 1099
BmcAI AGTACT 1 cut(s) 127
Bme1390I CCNGG 2 cut(s) 504, 743
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 3 cut(s) 598, 874, 927
BmrFI CCNGG 2 cut(s) 504, 743
BmsI GCATC 3 cut(s) 507, 1084, 1133
BpiI GAAGAC 4 cut(s) 19, 479, 688, 1022
BsaJI CCNNGG 2 cut(s) 60, 993
Bsc4I CCNNNNNNNGG 3 cut(s) 854, 855, 883
Bse1I ACTGG 3 cut(s) 16, 123, 1066
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 2 cut(s) 504, 743
BseDI CCNNGG 2 cut(s) 60, 993
BseGI GGATG 1 cut(s) 764
BseLI CCNNNNNNNGG 3 cut(s) 854, 855, 883
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 3 cut(s) 251, 369, 903
BseNI ACTGG 3 cut(s) 16, 123, 1066
BseRI GAGGAG 1 cut(s) 913
BseXI GCAGC 2 cut(s) 538, 1109
BsgI GTGCAG 1 cut(s) 767
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 1 cut(s) 926
BsiHKCI CYCGRG 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 854, 855, 883
BsmI GAATGC 3 cut(s) 177, 294, 785
BsnI GGCC 1 cut(s) 926
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 3 cut(s) 596, 628, 872
BspACI CCGC 3 cut(s) 77, 382, 724
BspANI GGCC 1 cut(s) 926
BspCNI CTCAG 3 cut(s) 252, 370, 902
BspFNI CGCG 1 cut(s) 726
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 3 cut(s) 598, 874, 927
BspPI GGATC 4 cut(s) 591, 604, 867, 880
BsrBI CCGCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 3 cut(s) 16, 123, 1066
BssECI CCNNGG 2 cut(s) 60, 993
BssMI GATC 3 cut(s) 596, 628, 872
BssNAI GTATAC 1 cut(s) 919
BssSI CACGAG 1 cut(s) 867
BssT1I CCWWGG 1 cut(s) 993
Bst1107I GTATAC 1 cut(s) 919
Bst2BI CACGAG 1 cut(s) 867
Bst2UI CCWGG 2 cut(s) 504, 743
Bst4CI ACNGT 2 cut(s) 243, 646
Bst6I CTCTTC 3 cut(s) 113, 436, 650
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 3 cut(s) 260, 378, 889
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 764
BstFNI CGCG 1 cut(s) 726
BstKTI GATC 3 cut(s) 599, 631, 875
BstMBI GATC 3 cut(s) 596, 628, 872
BstNI CCWGG 2 cut(s) 504, 743
BstNSI RCATGY 4 cut(s) 389, 805, 973, 1008
BstSCI CCNGG 2 cut(s) 502, 741
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 2 cut(s) 538, 1109
BstV2I GAAGAC 4 cut(s) 19, 479, 688, 1022
BstX2I RGATCY 3 cut(s) 596, 628, 872
BstXI CCANNNNNNTGG 1 cut(s) 833
BstYI RGATCY 3 cut(s) 596, 628, 872
BstZ17I GTATAC 1 cut(s) 919
BsuRI GGCC 1 cut(s) 926
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 764
BtsIMutI CAGTG 3 cut(s) 9, 37, 257
Cac8I GCNNGC 1 cut(s) 571
CaiI CAGNNNCTG 1 cut(s) 650
CciI TCATGA 1 cut(s) 766
Cfr13I GGNCC 1 cut(s) 925
CsiI ACCWGGT 1 cut(s) 741
Csp6I GTAC 1 cut(s) 126
CviAII CATG 9 cut(s) 206, 310, 386, 399, 767, 802, 922, 970, 1005
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 3 cut(s) 260, 378, 889
DpnI GATC 3 cut(s) 598, 630, 874
DpnII GATC 3 cut(s) 596, 628, 872
Eam1104I CTCTTC 3 cut(s) 113, 436, 650
EarI CTCTTC 3 cut(s) 113, 436, 650
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 993
Eco57I CTGAAG 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 186
EcoRI GAATTC 2 cut(s) 371, 404
EcoRII CCWGG 2 cut(s) 502, 741
EcoT14I CCWWGG 1 cut(s) 993
EcoT22I ATGCAT 2 cut(s) 207, 799
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 9 cut(s) 209, 313, 389, 402, 770, 805, 925, 973, 1008
FalI AAGNNNNNCTT 4 cut(s) 464, 496, 647, 679
FatI CATG 9 cut(s) 205, 309, 385, 398, 766, 801, 921, 969, 1004
FblI GTMKAC 2 cut(s) 6, 918
Fnu4HI GCNGC 4 cut(s) 383, 552, 724, 1098
FokI GGATG 1 cut(s) 771
Fsp4HI GCNGC 4 cut(s) 383, 552, 724, 1098
FspBI CTAG 4 cut(s) 101, 176, 584, 954
GluI GCNGC 4 cut(s) 383, 552, 724, 1098
HaeIII GGCC 1 cut(s) 926
Hin1II CATG 9 cut(s) 209, 313, 389, 402, 770, 805, 925, 973, 1008
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 2 cut(s) 193, 323
HinfI GANTC 7 cut(s) 105, 179, 618, 660, 671, 887, 962
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 4 cut(s) 7, 159, 257, 919
Hpy188I TCNGA 4 cut(s) 379, 516, 892, 967
Hpy188III TCNNGA 6 cut(s) 332, 481, 600, 767, 884, 1091
Hpy8I GTNNAC 4 cut(s) 7, 159, 257, 919
HpyAV CCTTC 6 cut(s) 573, 685, 859, 938, 942, 1005
HpyCH4III ACNGT 2 cut(s) 243, 646
HpyCH4IV ACGT 1 cut(s) 253
HpyF3I CTNAG 3 cut(s) 260, 378, 889
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 9 cut(s) 209, 313, 389, 402, 770, 805, 925, 973, 1008
Kzo9I GATC 3 cut(s) 596, 628, 872
Lsp1109I GCAGC 2 cut(s) 538, 1109
LweI GCATC 3 cut(s) 507, 1084, 1133
MabI ACCWGGT 1 cut(s) 741
MaeI CTAG 4 cut(s) 101, 176, 584, 954
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 340
MalI GATC 3 cut(s) 598, 630, 874
MbiI CCGCTC 1 cut(s) 382
MboI GATC 3 cut(s) 596, 628, 872
MflI RGATCY 3 cut(s) 596, 628, 872
MluCI AATT 9 cut(s) 265, 371, 404, 409, 498, 542, 562, 999, 1120
MlyI GAGTC 3 cut(s) 99, 612, 881
MnlI CCTC 4 cut(s) 437, 587, 629, 891
Mph1103I ATGCAT 2 cut(s) 207, 799
MroXI GAANNNNTTC 2 cut(s) 476, 695
MseI TTAA 4 cut(s) 132, 269, 435, 702
MslI CAYNNNNRTG 1 cut(s) 515
MspA1I CMGCKG 1 cut(s) 1100
MspR9I CCNGG 2 cut(s) 504, 743
Mva1269I GAATGC 3 cut(s) 177, 294, 785
MvaI CCWGG 2 cut(s) 504, 743
MvnI CGCG 1 cut(s) 726
NdeII GATC 3 cut(s) 596, 628, 872
NlaIII CATG 9 cut(s) 209, 313, 389, 402, 770, 805, 925, 973, 1008
NlaIV GGNNCC 3 cut(s) 598, 874, 927
NsiI ATGCAT 2 cut(s) 207, 799
NspI RCATGY 4 cut(s) 389, 805, 973, 1008
PagI TCATGA 1 cut(s) 766
PciI ACATGT 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 3 cut(s) 177, 294, 785
PdmI GAANNNNTTC 2 cut(s) 476, 695
PfeI GAWTC 4 cut(s) 179, 660, 671, 962
PkrI GCNGC 4 cut(s) 384, 553, 725, 1099
PleI GAGTC 3 cut(s) 99, 612, 881
PpsI GAGTC 3 cut(s) 99, 612, 881
PscI ACATGT 1 cut(s) 969
PshBI ATTAAT 2 cut(s) 435, 702
PsiI TTATAA 1 cut(s) 1125
Psp6I CCWGG 2 cut(s) 502, 741
PspGI CCWGG 2 cut(s) 502, 741
PspN4I GGNNCC 3 cut(s) 598, 874, 927
PspPI GGNCC 1 cut(s) 925
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 3 cut(s) 596, 628, 872
PvuII CAGCTG 1 cut(s) 1100
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 515
SalI GTCGAC 1 cut(s) 5
SaqAI TTAA 4 cut(s) 132, 269, 435, 702
SatI GCNGC 4 cut(s) 383, 552, 724, 1098
Sau3AI GATC 3 cut(s) 596, 628, 872
Sau96I GGNCC 1 cut(s) 925
ScaI AGTACT 1 cut(s) 127
SchI GAGTC 3 cut(s) 99, 612, 881
ScrFI CCNGG 2 cut(s) 504, 743
SexAI ACCWGGT 1 cut(s) 741
SfaNI GCATC 3 cut(s) 507, 1084, 1133
SmiMI CAYNNNNRTG 1 cut(s) 515
Sse9I AATT 9 cut(s) 265, 371, 404, 409, 498, 542, 562, 999, 1120
SsiI CCGC 3 cut(s) 77, 382, 724
SspMI CTAG 4 cut(s) 101, 176, 584, 954
StyD4I CCNGG 2 cut(s) 502, 741
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 2 cut(s) 243, 646
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 6, 736
TasI AATT 9 cut(s) 265, 371, 404, 409, 498, 542, 562, 999, 1120
TatI WGTACW 1 cut(s) 125
TauI GCSGC 2 cut(s) 385, 726
TfiI GAWTC 4 cut(s) 179, 660, 671, 962
Tru1I TTAA 4 cut(s) 132, 269, 435, 702
Tru9I TTAA 4 cut(s) 132, 269, 435, 702
TscAI CASTG 3 cut(s) 16, 37, 264
TseI GCWGC 2 cut(s) 551, 1097
TspDTI ATGAA 9 cut(s) 387, 688, 720, 742, 957, 1119, 1133, 1143, 1149
TspGWI ACGGA 2 cut(s) 572, 1044
TspRI CASTG 3 cut(s) 16, 37, 264
VspI ATTAAT 2 cut(s) 435, 702
XapI RAATTY 3 cut(s) 265, 371, 404
XceI RCATGY 4 cut(s) 389, 805, 973, 1008
XcmI CCANNNNNNNNNTGG 1 cut(s) 1053
XmiI GTMKAC 2 cut(s) 6, 918
XmnI GAANNNNTTC 2 cut(s) 476, 695
XspI CTAG 4 cut(s) 101, 176, 584, 954
ZrmI AGTACT 1 cut(s) 127
Zsp2I ATGCAT 2 cut(s) 207, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.