RchiOBHm_Chr4g0426321

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009635
Physical Location & Seq
Forward (+)
51839074 .. 51841956
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39538

Sequence Viewer

Length: 831 bp
ATGGCTTCGACCTCCTCCACCAACCCATTCGATGCCTCAACCTCAGGTAGTGCAAGTGAAAAGGATGGTGTTGAGTCTGCACAGGGAGCTGCTACTCTTCCAAGCTCAAACTCAAAACCTGAAGAAACCGATGTAAAAGCCCGGGTAGATGCTGTGTGGGAGCAAATGAATAAAGGAATATCTACTAAGAATTTCAAGGATTTATTAAAGAAATCTCATTCACCTGCGAATAAAACTCCAAAGAAGGCATCGTCTGATGGTTGGAAGGCATATCTCGGCCTGGCACCAAAGAAGACGGAGTCCCCAAAAGAAGATCTATCACAGAAGGGATTAAGTGTCGCACAGAACAACACTACTGATATTGTCATGCAGGACAGCTCTAGTGAGAATGCCAGGAAGCTAGCTGCTGCTGCCCTCGTAGAAGTTAAGGATGCTGGAGCTGCAGTATTAGGTAGAGGGAAAGTTGAGATCACAGAGGTCCGGGACTTTGCCGGTCAACAAATTGAAGTTAAGAAGCTTGTTGACGCTGATTCAAAGGAAGCATCTGAAAAGGCAAAAGCTCATGCACCTTCAGCTGTTGATGCCGTGCTTGAACAGATCAAGAAGAAACAAAAGCTCAGTGTGCTCGACAAAACCAAAAAGGACTGGGGAGAGTTTAAGGAAGAAAAAGGGTTGGATGAGGAGTTGGATGCCTACAAGAAGAGTTCAAACCAATATCTAGACAAGGTTTCCTTCTTGGAGCGAGCAGATTACCGGGAGTTTGAACGGGAGAGGGATGCACGGCTGGCTGTGCAGGCCAAAAGGAGGCCTGATATGAGGGAGGGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

276

Amino Acids

30.15

Weight (kDa)

8.42

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 191 - 262 1.1e-25 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 283
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 141, 555
AfiI CCNNNNNNNGG 1 cut(s) 804
AgsI TTSAA 6 cut(s) 196, 506, 534, 593, 708, 764
AjnI CCWGG 2 cut(s) 279, 392
Alw21I GWGCWC 1 cut(s) 627
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 3 cut(s) 277, 795, 806
ApeKI GCWGC 5 cut(s) 89, 404, 407, 410, 440
ApoI RAATTY 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 478, 824
AsuC2I CCSGG 4 cut(s) 142, 143, 482, 755
AsuHPI GGTGA 1 cut(s) 213
AsuNHI GCTAGC 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 2 cut(s) 478, 824
AxyI CCTNAGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 5 cut(s) 76, 391, 394, 397, 427
BccI CCATC 2 cut(s) 59, 251
BceAI ACGGC 2 cut(s) 569, 797
BciT130I CCWGG 2 cut(s) 281, 394
BcnI CCSGG 4 cut(s) 142, 143, 482, 755
BfaI CTAG 3 cut(s) 381, 401, 719
BfmI CTRYAG 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 232
BglII AGATCT 1 cut(s) 313
BisI GCNGC 5 cut(s) 90, 405, 408, 411, 441
BlsI GCNGC 5 cut(s) 91, 406, 409, 412, 442
Bme1390I CCNGG 6 cut(s) 142, 143, 281, 394, 482, 755
Bme18I GGWCC 2 cut(s) 478, 824
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 478, 824
BmiI GGNNCC 2 cut(s) 285, 825
BmrFI CCNGG 6 cut(s) 142, 143, 281, 394, 482, 755
BmrI ACTGGG 1 cut(s) 655
BmsI GCATC 8 cut(s) 22, 139, 257, 421, 551, 571, 679, 766
BmtI GCTAGC 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 655
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 456
BpuMI CCSGG 4 cut(s) 142, 143, 482, 755
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 804
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 650
Bse21I CCTNAGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 281, 394
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 5 cut(s) 70, 436, 682, 694, 781
BseLI CCNNNNNNNGG 1 cut(s) 804
BseMII CTCAG 2 cut(s) 57, 631
BseNI ACTGG 1 cut(s) 650
BseRI GAGGAG 2 cut(s) 4, 695
BseXI GCAGC 5 cut(s) 76, 391, 394, 397, 427
BsgI GTGCAG 2 cut(s) 63, 812
BshFI GGCC 3 cut(s) 279, 797, 808
BshNI GGYRCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 627
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 4 cut(s) 142, 481, 492, 754
BslFI GGGAC 2 cut(s) 286, 497
BslI CCNNNNNNNGG 1 cut(s) 804
BsmFI GGGAC 2 cut(s) 286, 497
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 3 cut(s) 279, 797, 808
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 3 cut(s) 313, 468, 597
BspANI GGCC 3 cut(s) 279, 797, 808
BspCNI CTCAG 2 cut(s) 56, 630
BspLI GGNNCC 2 cut(s) 285, 825
BspMAI CTGCAG 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 1 cut(s) 650
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 313, 468, 597
Bst2UI CCWGG 2 cut(s) 281, 394
Bst6I CTCTTC 2 cut(s) 102, 695
BstC8I GCNNGC 4 cut(s) 402, 744, 786, 795
BstDEI CTNAG 3 cut(s) 43, 186, 617
BstF5I GGATG 5 cut(s) 70, 436, 682, 694, 781
BstKTI GATC 3 cut(s) 316, 471, 600
BstMBI GATC 3 cut(s) 313, 468, 597
BstMWI GCNNNNNNNGC 9 cut(s) 86, 410, 440, 572, 581, 622, 785, 790, 794
BstNI CCWGG 2 cut(s) 281, 394
BstSCI CCNGG 6 cut(s) 140, 141, 279, 392, 480, 753
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 5 cut(s) 76, 391, 394, 397, 427
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 43
BsuRI GGCC 3 cut(s) 279, 797, 808
BtsCI GGATG 5 cut(s) 70, 436, 682, 694, 781
BtsIMutI CAGTG 1 cut(s) 625
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 4 cut(s) 402, 744, 786, 795
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 2 cut(s) 478, 824
Cfr9I CCCGGG 1 cut(s) 141
CseI GACGC 1 cut(s) 533
CviAII CATG 2 cut(s) 367, 563
DdeI CTNAG 3 cut(s) 43, 186, 617
DpnI GATC 3 cut(s) 315, 470, 599
DpnII GATC 3 cut(s) 313, 468, 597
Eam1104I CTCTTC 2 cut(s) 102, 695
EarI CTCTTC 2 cut(s) 102, 695
Eco147I AGGCCT 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 478, 824
Eco57I CTGAAG 2 cut(s) 141, 555
Eco81I CCTNAGG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 279, 392
FaeI CATG 2 cut(s) 370, 566
FaiI YATR 5 cut(s) 271, 368, 564, 815, 829
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 2 cut(s) 286, 497
FatI CATG 2 cut(s) 366, 562
Fnu4HI GCNGC 5 cut(s) 90, 405, 408, 411, 441
FokI GGATG 5 cut(s) 77, 443, 689, 701, 788
Fsp4HI GCNGC 5 cut(s) 90, 405, 408, 411, 441
FspBI CTAG 3 cut(s) 381, 401, 719
GluI GCNGC 5 cut(s) 90, 405, 408, 411, 441
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 3 cut(s) 279, 797, 808
HapII CCGG 4 cut(s) 142, 481, 492, 754
HgaI GACGC 1 cut(s) 533
Hin1II CATG 2 cut(s) 370, 566
HincII GTYRAC 2 cut(s) 497, 523
HindII GTYRAC 2 cut(s) 497, 523
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 3 cut(s) 74, 299, 530
HpaII CCGG 4 cut(s) 142, 481, 492, 754
HphI GGTGA 1 cut(s) 213
Hpy166II GTNNAC 2 cut(s) 497, 523
Hpy188I TCNGA 2 cut(s) 256, 547
Hpy188III TCNNGA 2 cut(s) 601, 719
Hpy8I GTNNAC 2 cut(s) 497, 523
HpyAV CCTTC 5 cut(s) 238, 259, 319, 579, 742
HpyCH4V TGCA 7 cut(s) 53, 80, 370, 443, 566, 779, 793
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 410, 440, 572, 581, 622, 785, 790, 794
HpyF3I CTNAG 3 cut(s) 43, 186, 617
Hsp92II CATG 2 cut(s) 370, 566
Kzo9I GATC 3 cut(s) 313, 468, 597
LmnI GCTCC 4 cut(s) 86, 160, 437, 739
Lsp1109I GCAGC 5 cut(s) 76, 391, 394, 397, 427
LweI GCATC 8 cut(s) 22, 139, 257, 421, 551, 571, 679, 766
MaeI CTAG 3 cut(s) 381, 401, 719
MalI GATC 3 cut(s) 315, 470, 599
MboI GATC 3 cut(s) 313, 468, 597
MboII GAAGA 7 cut(s) 89, 134, 304, 323, 616, 674, 712
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 2 cut(s) 190, 501
MlyI GAGTC 2 cut(s) 83, 308
MmeI TCCRAC 3 cut(s) 242, 654, 666
MseI TTAA 5 cut(s) 206, 332, 426, 510, 657
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 4 cut(s) 142, 481, 492, 754
MspR9I CCNGG 6 cut(s) 142, 143, 281, 394, 482, 755
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 2 cut(s) 281, 394
MwoI GCNNNNNNNGC 9 cut(s) 86, 410, 440, 572, 581, 622, 785, 790, 794
NciI CCSGG 4 cut(s) 142, 143, 482, 755
NdeII GATC 3 cut(s) 313, 468, 597
NheI GCTAGC 1 cut(s) 400
NlaIII CATG 2 cut(s) 370, 566
NlaIV GGNNCC 2 cut(s) 285, 825
NmeAIII GCCGAG 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 232
PceI AGGCCT 1 cut(s) 808
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 530
PflFI GACNNNGTC 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 5 cut(s) 91, 406, 409, 412, 442
PleI GAGTC 2 cut(s) 82, 307
PpsI GAGTC 2 cut(s) 82, 307
Psp6I CCWGG 2 cut(s) 279, 392
PspGI CCWGG 2 cut(s) 279, 392
PspN4I GGNNCC 2 cut(s) 285, 825
PspPI GGNCC 2 cut(s) 478, 824
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 575
SaqAI TTAA 5 cut(s) 206, 332, 426, 510, 657
SatI GCNGC 5 cut(s) 90, 405, 408, 411, 441
Sau3AI GATC 3 cut(s) 313, 468, 597
Sau96I GGNCC 2 cut(s) 478, 824
SchI GAGTC 2 cut(s) 83, 308
ScrFI CCNGG 6 cut(s) 142, 143, 281, 394, 482, 755
SduI GDGCHC 1 cut(s) 627
SfaNI GCATC 8 cut(s) 22, 139, 257, 421, 551, 571, 679, 766
SfcI CTRYAG 1 cut(s) 441
SinI GGWCC 2 cut(s) 478, 824
SmaI CCCGGG 1 cut(s) 143
Sse9I AATT 2 cut(s) 190, 501
SseBI AGGCCT 1 cut(s) 808
SspMI CTAG 3 cut(s) 381, 401, 719
StuI AGGCCT 1 cut(s) 808
StyD4I CCNGG 6 cut(s) 140, 141, 279, 392, 480, 753
TaqI TCGA 3 cut(s) 8, 30, 627
TasI AATT 2 cut(s) 190, 501
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 5 cut(s) 206, 332, 426, 510, 657
Tru9I TTAA 5 cut(s) 206, 332, 426, 510, 657
TscAI CASTG 1 cut(s) 625
TseI GCWGC 5 cut(s) 89, 404, 407, 410, 440
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 141
TspRI CASTG 1 cut(s) 625
Tth111I GACNNNGTC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 478, 824
XapI RAATTY 1 cut(s) 190
XbaI TCTAGA 1 cut(s) 718
XmaI CCCGGG 1 cut(s) 141
XspI CTAG 3 cut(s) 381, 401, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.