Rh4AG267100

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009635
Physical Location & Seq
Forward (+)
58354421 .. 58359278
4858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG267100.1

Sequence Viewer

Length: 861 bp
ATGGCTTCGACCTCCTCCACCAACCCATTCGATGCCTCAACCTCAGGTAGTGCAAGTGAAAAGGATGGTGTTGAGTCTGCACAGGGAGCTGCTACTCTTCCAAGCTCAAACTCAAAACCTGAAGAAACCGGTCAGAAATTCTTCTCATTCACAAATGCATATGTAAAAGCCCGGGTAGATGCCATGTGGGAGCAAATGAATAAAGGAATATCTACTAAGAATTTCAAGGATTTATTAAAGAAATCTCATTCACCTGCGAATAAAACTCCAAAGAAGGCATCGTCTGATGGTTGGAAGGCATATCTCGGCCTGGCACCAAAGAAGATGGAGTCCCCAAAAGAAGATCTATCACAGAAGGGATTAAGTGTCGCACAGAACAACACTACTGATATTGTCATGCAGGACAGCTCTAGTGAGAATGCCAGGAAGCTAGCTGCTGCTGCCCTCGTAGAAGTTAAGGATGCTGGAGCTGCAGTATTAGGTAGAGGGAAAGTTGAGATCACAGAGGTCCGGGACTTTGCCGGTCAACAAATTGAAGTTAAGAAGCTTGTTGACGCTGATTCAAAGGAAGCATCTGAAAAGGCGAAAGCTCATGCACCTTCAGCTGTTGATGCCGTGCTTGAACAGATCAAGAAGAAACAAAAGCTCAGTGTGCTCGACAAAACCAAAAAGGACTGGGGAGAGTTTAAGGAAGAAAAAGGGTTGGATGAGGAGTTGGATGCTTACAAGAAGAGTTCAAACCAATATCTAGACAAGGTTTCCTTCTTGGAGCGAGCAGATTATCGGGAGTTTGAACGGGAGAGGGATGCACGGCTGGCTGTGCAGGCCAAAAGGAGGCCTGATATGAGGGAAGGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

286

Amino Acids

31.39

Weight (kDa)

8.88

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 201 - 272 1.2e-25 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 313
AcsI RAATTY 2 cut(s) 137, 220
AcuI CTGAAG 2 cut(s) 141, 585
AfiI CCNNNNNNNGG 1 cut(s) 834
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 6 cut(s) 226, 536, 564, 623, 738, 794
AjnI CCWGG 2 cut(s) 309, 422
Alw21I GWGCWC 1 cut(s) 657
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 3 cut(s) 307, 825, 836
ApeKI GCWGC 5 cut(s) 89, 434, 437, 440, 470
ApoI RAATTY 2 cut(s) 137, 220
AsiGI ACCGGT 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 508, 854
AsuC2I CCSGG 3 cut(s) 172, 173, 512
AsuHPI GGTGA 1 cut(s) 243
AsuNHI GCTAGC 1 cut(s) 430
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 2 cut(s) 508, 854
AxyI CCTNAGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 5 cut(s) 76, 421, 424, 427, 457
BccI CCATC 3 cut(s) 59, 281, 319
BceAI ACGGC 2 cut(s) 599, 827
BciT130I CCWGG 2 cut(s) 311, 424
BcnI CCSGG 3 cut(s) 172, 173, 512
BfaI CTAG 3 cut(s) 411, 431, 749
BfmI CTRYAG 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 262
BglII AGATCT 1 cut(s) 343
BisI GCNGC 5 cut(s) 90, 435, 438, 441, 471
BlsI GCNGC 5 cut(s) 91, 436, 439, 442, 472
Bme1390I CCNGG 5 cut(s) 172, 173, 311, 424, 512
Bme18I GGWCC 2 cut(s) 508, 854
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 508, 854
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 5 cut(s) 172, 173, 311, 424, 512
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 8 cut(s) 22, 169, 287, 451, 581, 601, 709, 796
BmtI GCTAGC 1 cut(s) 434
BmuI ACTGGG 1 cut(s) 685
BpmI CTGGAG 1 cut(s) 486
BpuMI CCSGG 3 cut(s) 172, 173, 512
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 834
Bse118I RCCGGY 2 cut(s) 128, 521
Bse1I ACTGG 1 cut(s) 680
Bse21I CCTNAGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 311, 424
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 5 cut(s) 70, 466, 712, 724, 811
BseLI CCNNNNNNNGG 1 cut(s) 834
BseMII CTCAG 2 cut(s) 57, 661
BseNI ACTGG 1 cut(s) 680
BseRI GAGGAG 2 cut(s) 4, 725
BseXI GCAGC 5 cut(s) 76, 421, 424, 427, 457
BsgI GTGCAG 2 cut(s) 63, 842
BshFI GGCC 3 cut(s) 309, 827, 838
BshNI GGYRCC 1 cut(s) 313
BshTI ACCGGT 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 657
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 4 cut(s) 129, 172, 511, 522
BslFI GGGAC 2 cut(s) 316, 527
BslI CCNNNNNNNGG 1 cut(s) 834
BsmFI GGGAC 2 cut(s) 316, 527
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 3 cut(s) 309, 827, 838
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 657
Bsp143I GATC 3 cut(s) 343, 498, 627
BspANI GGCC 3 cut(s) 309, 827, 838
BspCNI CTCAG 2 cut(s) 56, 660
BspLI GGNNCC 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 475
BspMI ACCTGC 1 cut(s) 262
BspOI GCTAGC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 313
BsrFI RCCGGY 2 cut(s) 128, 521
BsrI ACTGG 1 cut(s) 680
BssAI RCCGGY 2 cut(s) 128, 521
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 3 cut(s) 343, 498, 627
Bst2UI CCWGG 2 cut(s) 311, 424
Bst6I CTCTTC 2 cut(s) 102, 725
BstC8I GCNNGC 4 cut(s) 432, 774, 816, 825
BstDEI CTNAG 3 cut(s) 43, 216, 647
BstF5I GGATG 5 cut(s) 70, 466, 712, 724, 811
BstKTI GATC 3 cut(s) 346, 501, 630
BstMBI GATC 3 cut(s) 343, 498, 627
BstMWI GCNNNNNNNGC 9 cut(s) 86, 440, 470, 602, 611, 652, 815, 820, 824
BstNI CCWGG 2 cut(s) 311, 424
BstSCI CCNGG 5 cut(s) 170, 171, 309, 422, 510
BstSFI CTRYAG 1 cut(s) 471
BstV1I GCAGC 5 cut(s) 76, 421, 424, 427, 457
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
Bsu36I CCTNAGG 1 cut(s) 43
BsuRI GGCC 3 cut(s) 309, 827, 838
BtsCI GGATG 5 cut(s) 70, 466, 712, 724, 811
BtsIMutI CAGTG 1 cut(s) 655
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 4 cut(s) 432, 774, 816, 825
Cfr10I RCCGGY 2 cut(s) 128, 521
Cfr13I GGNCC 2 cut(s) 508, 854
Cfr9I CCCGGG 1 cut(s) 171
CseI GACGC 1 cut(s) 563
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 3 cut(s) 184, 397, 593
DdeI CTNAG 3 cut(s) 43, 216, 647
DpnI GATC 3 cut(s) 345, 500, 629
DpnII GATC 3 cut(s) 343, 498, 627
Eam1104I CTCTTC 2 cut(s) 102, 725
EarI CTCTTC 2 cut(s) 102, 725
Eco147I AGGCCT 1 cut(s) 838
Eco47I GGWCC 2 cut(s) 508, 854
Eco57I CTGAAG 2 cut(s) 141, 585
Eco81I CCTNAGG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 309, 422
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 3 cut(s) 187, 400, 596
FaiI YATR 8 cut(s) 160, 162, 185, 301, 398, 594, 845, 859
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FaqI GGGAC 2 cut(s) 316, 527
FatI CATG 3 cut(s) 183, 396, 592
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 5 cut(s) 90, 435, 438, 441, 471
FokI GGATG 5 cut(s) 77, 473, 719, 731, 818
Fsp4HI GCNGC 5 cut(s) 90, 435, 438, 441, 471
FspBI CTAG 3 cut(s) 411, 431, 749
GluI GCNGC 5 cut(s) 90, 435, 438, 441, 471
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 3 cut(s) 309, 827, 838
HapII CCGG 4 cut(s) 129, 172, 511, 522
HgaI GACGC 1 cut(s) 563
Hin1II CATG 3 cut(s) 187, 400, 596
HincII GTYRAC 2 cut(s) 527, 553
HindII GTYRAC 2 cut(s) 527, 553
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 3 cut(s) 74, 329, 560
HpaII CCGG 4 cut(s) 129, 172, 511, 522
HphI GGTGA 1 cut(s) 243
Hpy166II GTNNAC 2 cut(s) 527, 553
Hpy188I TCNGA 3 cut(s) 135, 286, 577
Hpy188III TCNNGA 3 cut(s) 631, 749, 785
Hpy8I GTNNAC 2 cut(s) 527, 553
HpyAV CCTTC 6 cut(s) 268, 289, 349, 609, 772, 845
HpyCH4V TGCA 8 cut(s) 53, 80, 158, 400, 473, 596, 809, 823
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 440, 470, 602, 611, 652, 815, 820, 824
HpyF3I CTNAG 3 cut(s) 43, 216, 647
Hsp92II CATG 3 cut(s) 187, 400, 596
Kzo9I GATC 3 cut(s) 343, 498, 627
LmnI GCTCC 4 cut(s) 86, 190, 467, 769
Lsp1109I GCAGC 5 cut(s) 76, 421, 424, 427, 457
LweI GCATC 8 cut(s) 22, 169, 287, 451, 581, 601, 709, 796
MaeI CTAG 3 cut(s) 411, 431, 749
MalI GATC 3 cut(s) 345, 500, 629
MboI GATC 3 cut(s) 343, 498, 627
MboII GAAGA 8 cut(s) 89, 133, 134, 334, 353, 646, 704, 742
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 3 cut(s) 137, 220, 531
MlyI GAGTC 2 cut(s) 83, 338
MmeI TCCRAC 3 cut(s) 272, 684, 696
Mph1103I ATGCAT 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 5 cut(s) 236, 362, 456, 540, 687
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 4 cut(s) 129, 172, 511, 522
MspR9I CCNGG 5 cut(s) 172, 173, 311, 424, 512
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 2 cut(s) 311, 424
MwoI GCNNNNNNNGC 9 cut(s) 86, 440, 470, 602, 611, 652, 815, 820, 824
NciI CCSGG 3 cut(s) 172, 173, 512
NdeI CATATG 1 cut(s) 160
NdeII GATC 3 cut(s) 343, 498, 627
NheI GCTAGC 1 cut(s) 430
NlaIII CATG 3 cut(s) 187, 400, 596
NlaIV GGNNCC 1 cut(s) 315
NmeAIII GCCGAG 1 cut(s) 285
NsiI ATGCAT 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 262
PceI AGGCCT 1 cut(s) 838
PctI GAATGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 560
PfoI TCCNGGA 1 cut(s) 510
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 5 cut(s) 91, 436, 439, 442, 472
PleI GAGTC 2 cut(s) 82, 337
PpsI GAGTC 2 cut(s) 82, 337
Psp6I CCWGG 2 cut(s) 309, 422
PspGI CCWGG 2 cut(s) 309, 422
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 2 cut(s) 508, 854
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 605
SaqAI TTAA 5 cut(s) 236, 362, 456, 540, 687
SatI GCNGC 5 cut(s) 90, 435, 438, 441, 471
Sau3AI GATC 3 cut(s) 343, 498, 627
Sau96I GGNCC 2 cut(s) 508, 854
SchI GAGTC 2 cut(s) 83, 338
ScrFI CCNGG 5 cut(s) 172, 173, 311, 424, 512
SduI GDGCHC 1 cut(s) 657
SfaNI GCATC 8 cut(s) 22, 169, 287, 451, 581, 601, 709, 796
SfcI CTRYAG 1 cut(s) 471
SinI GGWCC 2 cut(s) 508, 854
SmaI CCCGGG 1 cut(s) 173
Sse9I AATT 3 cut(s) 137, 220, 531
SseBI AGGCCT 1 cut(s) 838
SspMI CTAG 3 cut(s) 411, 431, 749
StuI AGGCCT 1 cut(s) 838
StyD4I CCNGG 5 cut(s) 170, 171, 309, 422, 510
TaqI TCGA 3 cut(s) 8, 30, 657
TasI AATT 3 cut(s) 137, 220, 531
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 5 cut(s) 236, 362, 456, 540, 687
Tru9I TTAA 5 cut(s) 236, 362, 456, 540, 687
TscAI CASTG 1 cut(s) 655
TseI GCWGC 5 cut(s) 89, 434, 437, 440, 470
TspDTI ATGAA 1 cut(s) 212
TspMI CCCGGG 1 cut(s) 171
TspRI CASTG 1 cut(s) 655
VpaK11BI GGWCC 2 cut(s) 508, 854
XapI RAATTY 2 cut(s) 137, 220
XbaI TCTAGA 1 cut(s) 748
XmaI CCCGGG 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 3 cut(s) 411, 431, 749
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.