Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009635

Physical Location & Seq

Genomic Coordinates Reverse (-)

8898266 .. 8900784

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGCCTGATGGGCCTCCAAAAGTCAAAATATAAGCTCGAAGAACCCAATAAACAGACTATTCTTTTGGTACCAGTTACCACCAAGACTCTCTCTCTCTCCCTCTCTCTCCACTTTTGGGTTATCTCTTGGATGGCAACCACCACCGCAACCACCGCTCTCGGCGCCTCCAGTTCAGGTACTGCAGGTGAAAAGGATGGTTTACCGGTCGAGTCTACCAACGGAGCTCCTCCTCTTCCAAGCTTAGAGACAAAACCTGAACAAACGGAGGTAAAAGCTCGGGTAGATGCCATGTGGGAGCAAATGAATAAAGGAGTATCAAATAAGCAGTTCAAGGATTTATTAAAGAAGTCTTCCTCATCTGTGAATAAAACTCCCAAGAAGTCATCTAATAATTGGATGGGATATCTGGGCCTGGCACAAAAGAAGGCAGAGTCCCCTAAAGAAGATGCTGCACAGAAGGGATCAAGTGTCATGAAGAACAGCTCCAGTGATAATGGCGTGCAGGACAAATCTCGTGACGAAGCCAGGCGGCTTGCTGCTGCTGCTCTTGTAGAAGTTAAGGATGCTGCAGTTGCAACATCTGGCAGAGGGAAAGTTGAGATCATGGAGGTTCGGGATTTTGCTGGTAAAGAAATTGAATACAAGAAGCTTGTTGATGCTGATTCAAAGGAAGCATCCGAAAAGGCAAAAGCTCCTGCATCTTCAGGTGTCGATGCTGTGCTTGAACAGATTAAGAAGAAACAAAAGCTCAGTGTGCTTGACAAAACGAAAAAGGATTGGGGGGAGTTCAAGGAAGAGAAAGGGTTGGAGGAGGAGTTGGAATCTTACAAGAAGAGTTCAAATCAATATTTGGATAAGGTAAACTTTTTGCAGCGAGCAGATTTCCGAGAGTTTGAACGGGAGAGGGATGCGCGCCTGGCCGTGCAGGCCAAAAGGAAACCAGATATGCGGGAGGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCNT

Protein Analysis

322

Amino Acids

35.48

Weight (kDa)

9.22

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G30490 AT5G30490 AT5G30490
fragaria_vesca	FvH4_4g20890 FvH4_4g20890
malus_domestica	MD13G1147500.v1.1 MD16G1145900.v1.1
prunus_persica	Prupe.1G111000_v2.0.a1 Prupe.1G111000_v2.0.a1
pyrus_communis	pycom13g12700 pycom16g12510
rosa_chinensis	RchiOBHm_Chr4g0426321
rosa_laevigata	RLG00000007303
rosa_multiflora	Rmu_sc0000730.1_g000045 Rmu_sc0007942.1_g000012
rosa_roxburghii	Rroxscaffold_5G00368330
rosa_rugosa	Rorug04G0210100
rosa_samantha	Rh4AG267100 Rh4BG273000 Rh4CG287200 Rh4DG269700
rosa_wichuraiana	Rw4G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	176
Acc65I	GGTACC	1 cut(s)	70
AccB1I	GGYRCC	2 cut(s)	70, 164
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	215
AccII	CGCG	1 cut(s)	916
AciI	CCGC	4 cut(s)	147, 156, 532, 952
AclWI	GGATC	1 cut(s)	472
AcoI	YGGCCR	1 cut(s)	921
AcuI	CTGAAG	1 cut(s)	690
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	72, 181
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgeI	ACCGGT	1 cut(s)	205
AgsI	TTSAA	7 cut(s)	334, 641, 669, 728, 793, 843, 899
AjnI	CCWGG	3 cut(s)	414, 527, 918
AluBI	AGCT	8 cut(s)	37, 227, 243, 278, 486, 652, 695, 751
AluI	AGCT	8 cut(s)	37, 227, 243, 278, 486, 652, 695, 751
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	472
AlwNI	CAGNNNCTG	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	5 cut(s)	4, 13, 412, 921, 930
ApeKI	GCWGC	6 cut(s)	452, 539, 542, 545, 569, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AsiGI	ACCGGT	1 cut(s)	205
Asp718I	GGTACC	1 cut(s)	70
AspLEI	GCGC	3 cut(s)	167, 916, 918
AspS9I	GGNCC	3 cut(s)	4, 13, 412
AsuHPI	GGTGA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	279
BanI	GGYRCC	2 cut(s)	70, 164
BanII	GRGCYC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	6 cut(s)	439, 526, 529, 532, 556, 886
BccI	CCATC	4 cut(s)	4, 127, 191, 394
BceAI	ACGGC	1 cut(s)	908
BciT130I	CCWGG	3 cut(s)	416, 529, 920
BcoDI	GTCTC	1 cut(s)	242
BfmI	CTRYAG	2 cut(s)	183, 570
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	176
BglI	GCCNNNNNGGC	2 cut(s)	12, 929
BisI	GCNGC	7 cut(s)	453, 533, 540, 543, 546, 570, 875
BlsI	GCNGC	7 cut(s)	454, 534, 541, 544, 547, 571, 876
Bme1390I	CCNGG	3 cut(s)	416, 529, 920
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	3 cut(s)	4, 13, 412
BmiI	GGNNCC	3 cut(s)	72, 166, 960
BmrFI	CCNGG	3 cut(s)	416, 529, 920
BmsI	GCATC	8 cut(s)	277, 439, 556, 649, 686, 706, 710, 901
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	2 cut(s)	154, 472
BsaHI	GRCGYC	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	3 cut(s)	74, 171, 489
BseBI	CCWGG	3 cut(s)	416, 529, 920
BseGI	GGATG	6 cut(s)	138, 202, 405, 571, 677, 916
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	766
BseNI	ACTGG	3 cut(s)	74, 171, 489
BsePI	GCGCGC	1 cut(s)	914
BseRI	GAGGAG	4 cut(s)	219, 222, 827, 830
BseXI	GCAGC	6 cut(s)	439, 526, 529, 532, 556, 886
BsgI	GTGCAG	3 cut(s)	438, 524, 947
Bsh1236I	CGCG	1 cut(s)	916
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	5 cut(s)	6, 15, 414, 923, 932
BshNI	GGYRCC	2 cut(s)	70, 164
BshTI	ACCGGT	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	5 cut(s)	6, 15, 414, 923, 932
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	464, 603
BspACI	CCGC	4 cut(s)	147, 156, 532, 952
BspANI	GGCC	5 cut(s)	6, 15, 414, 923, 932
BspCNI	CTCAG	1 cut(s)	765
BspFNI	CGCG	1 cut(s)	916
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	72, 166, 960
BspMAI	CTGCAG	2 cut(s)	187, 574
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	472
BspT107I	GGYRCC	2 cut(s)	70, 164
BsrBI	CCGCTC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	3 cut(s)	74, 171, 489
BssAI	RCCGGY	1 cut(s)	205
BssHII	GCGCGC	1 cut(s)	914
BssMI	GATC	2 cut(s)	464, 603
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	3 cut(s)	416, 529, 920
Bst6I	CTCTTC	3 cut(s)	240, 792, 830
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	5 cut(s)	503, 537, 879, 916, 930
BstDEI	CTNAG	2 cut(s)	244, 752
BstF5I	GGATG	6 cut(s)	138, 202, 405, 571, 677, 916
BstFNI	CGCG	1 cut(s)	916
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	3 cut(s)	167, 916, 918
BstKTI	GATC	2 cut(s)	467, 606
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	2 cut(s)	464, 603
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	9 cut(s)	12, 155, 164, 545, 575, 757, 920, 929, 958
BstNI	CCWGG	3 cut(s)	416, 529, 920
BstSCI	CCNGG	3 cut(s)	414, 527, 918
BstSFI	CTRYAG	2 cut(s)	183, 570
BstUI	CGCG	1 cut(s)	916
BstV1I	GCAGC	6 cut(s)	439, 526, 529, 532, 556, 886
BstV2I	GAAGAC	1 cut(s)	345
BsuRI	GGCC	5 cut(s)	6, 15, 414, 923, 932
BtsCI	GGATG	6 cut(s)	138, 202, 405, 571, 677, 916
BtsIMutI	CAGTG	2 cut(s)	496, 760
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	5 cut(s)	503, 537, 879, 916, 930
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	3 cut(s)	167, 916, 918
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	4, 13, 412
Csp6I	GTAC	2 cut(s)	71, 180
CspAI	ACCGGT	1 cut(s)	205
CviAII	CATG	3 cut(s)	292, 475, 607
CviQI	GTAC	2 cut(s)	71, 180
DdeI	CTNAG	2 cut(s)	244, 752
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	2 cut(s)	466, 605
DpnII	GATC	2 cut(s)	464, 603
EaeI	YGGCCR	1 cut(s)	921
Eam1104I	CTCTTC	3 cut(s)	240, 792, 830
EarI	CTCTTC	3 cut(s)	240, 792, 830
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	414, 527, 918
EcoRV	GATATC	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
FaeI	CATG	3 cut(s)	295, 478, 610
FaiI	YATR	6 cut(s)	33, 293, 476, 608, 950, 964
FalI	AAGNNNNNCTT	2 cut(s)	851, 883
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	291, 474, 606
FauI	CCCGC	1 cut(s)	945
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	7 cut(s)	453, 533, 540, 543, 546, 570, 875
FokI	GGATG	6 cut(s)	145, 209, 412, 578, 664, 923
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	7 cut(s)	453, 533, 540, 543, 546, 570, 875
GlaI	GCGC	3 cut(s)	166, 915, 917
GluI	GCNGC	7 cut(s)	453, 533, 540, 543, 546, 570, 875
GsuI	CTGGAG	2 cut(s)	154, 472
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	5 cut(s)	6, 15, 414, 923, 932
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	3 cut(s)	167, 916, 918
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	3 cut(s)	295, 478, 610
Hin6I	GCGC	3 cut(s)	165, 914, 916
HinP1I	GCGC	3 cut(s)	165, 914, 916
HindIII	AAGCTT	2 cut(s)	241, 650
HinfI	GANTC	5 cut(s)	88, 212, 434, 665, 824
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	3 cut(s)	203, 216, 865
Hpy188I	TCNGA	2 cut(s)	682, 890
Hpy188III	TCNNGA	3 cut(s)	475, 518, 617
Hpy8I	GTNNAC	3 cut(s)	203, 216, 865
HpyAV	CCTTC	2 cut(s)	421, 454
HpyCH4V	TGCA	8 cut(s)	185, 455, 505, 572, 578, 701, 874, 928
HpyF10VI	GCNNNNNNNGC	9 cut(s)	12, 155, 164, 545, 575, 757, 920, 929, 958
HpyF3I	CTNAG	2 cut(s)	244, 752
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	295, 478, 610
HspAI	GCGC	3 cut(s)	165, 914, 916
KasI	GGCGCC	1 cut(s)	164
KpnI	GGTACC	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	464, 603
LmnI	GCTCC	6 cut(s)	224, 232, 298, 491, 700, 958
Lsp1109I	GCAGC	6 cut(s)	439, 526, 529, 532, 556, 886
LweI	GCATC	8 cut(s)	277, 439, 556, 649, 686, 706, 710, 901
MaeIII	GTNAC	2 cut(s)	76, 518
MalI	GATC	2 cut(s)	466, 605
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	2 cut(s)	464, 603
MboII	GAAGA	9 cut(s)	53, 227, 345, 458, 490, 696, 751, 809, 847
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	2 cut(s)	394, 636
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	3 cut(s)	82, 221, 443
MmeI	TCCRAC	2 cut(s)	789, 801
MseI	TTAA	3 cut(s)	344, 561, 735
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	3 cut(s)	416, 529, 920
MvaI	CCWGG	3 cut(s)	416, 529, 920
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	9 cut(s)	12, 155, 164, 545, 575, 757, 920, 929, 958
NarI	GGCGCC	1 cut(s)	165
NdeII	GATC	2 cut(s)	464, 603
NlaIII	CATG	3 cut(s)	295, 478, 610
NlaIV	GGNNCC	3 cut(s)	72, 166, 960
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	518
PagI	TCATGA	1 cut(s)	474
PaqCI	CACCTGC	1 cut(s)	176
PauI	GCGCGC	1 cut(s)	914
PfeI	GAWTC	2 cut(s)	665, 824
PinAI	ACCGGT	1 cut(s)	205
PkrI	GCNGC	7 cut(s)	454, 534, 541, 544, 547, 571, 876
PleI	GAGTC	3 cut(s)	82, 220, 442
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	3 cut(s)	82, 220, 442
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	3 cut(s)	414, 527, 918
PspGI	CCWGG	3 cut(s)	414, 527, 918
PspN4I	GGNNCC	3 cut(s)	72, 166, 960
PspPI	GGNCC	3 cut(s)	4, 13, 412
PstI	CTGCAG	2 cut(s)	187, 574
PstNI	CAGNNNCTG	1 cut(s)	182
PteI	GCGCGC	1 cut(s)	914
RsaI	GTAC	2 cut(s)	72, 181
RsaNI	GTAC	2 cut(s)	71, 180
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	344, 561, 735
SatI	GCNGC	7 cut(s)	453, 533, 540, 543, 546, 570, 875
Sau3AI	GATC	2 cut(s)	464, 603
Sau96I	GGNCC	3 cut(s)	4, 13, 412
SchI	GAGTC	3 cut(s)	82, 221, 443
ScrFI	CCNGG	3 cut(s)	416, 529, 920
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	8 cut(s)	277, 439, 556, 649, 686, 706, 710, 901
SfcI	CTRYAG	2 cut(s)	183, 570
SfiI	GGCCNNNNNGGCC	2 cut(s)	12, 929
SfoI	GGCGCC	1 cut(s)	166
Sse9I	AATT	2 cut(s)	394, 636
SsiI	CCGC	4 cut(s)	147, 156, 532, 952
SspDI	GGCGCC	1 cut(s)	164
SspI	AATATT	1 cut(s)	851
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	3 cut(s)	414, 527, 918
TaqI	TCGA	3 cut(s)	39, 210, 714
TasI	AATT	2 cut(s)	394, 636
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	2 cut(s)	665, 824
Tru1I	TTAA	3 cut(s)	344, 561, 735
Tru9I	TTAA	3 cut(s)	344, 561, 735
TscAI	CASTG	2 cut(s)	496, 760
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	6 cut(s)	452, 539, 542, 545, 569, 874
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	2 cut(s)	320, 491
TspGWI	ACGGA	2 cut(s)	237, 281
TspRI	CASTG	2 cut(s)	496, 760
XmiI	GTMKAC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.