Rw4G023140

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009635
Physical Location & Seq
Forward (+)
48734992 .. 48737825
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023140.1

Sequence Viewer

Length: 828 bp
ATGGCTTCGACCTCCTCCACCAACCCATTCGATGCCTCAACCTCAGGTAGTGCAAGTGAAAAGGATGGTGTTGAGTCTGCACAGGGAGCTCCTACTCTTCCAAGCTCAAACTCAAAACCTGAAGAAACCGATGTAAAAGCCCGGGTAGATGCCGTGTGGGAGCAAATGAATAAAGGAATATCTACTAAGAATTTCAAGGATTTATTAAAGAAATCTCATTCACCTGCGAATAAAACTCCAAAGAAGGCATCGTCTGATGGTTGGAAGGCATATCTCGGCCTGGCACCAAAGAAGACGGAGTCCCCAAAAGATCTATCACAGAAGGGATTAAGTGTCGCACAGAACAACACTACTGATATTGTCATGCAGGACAGCTCTAGTGAGAATGCCAGGAAGCTAGCTGCTGCTGCCCTCGTAGAAGTTAAGGATGCTGGAGCTGCAGTATTGGGTAGAGGGAAAGTTGAGATCACAGAGGTCCGGGACTTTGCCGGTCAACAAATTGAAGTTAAGAAGCTTGTTGACGCTGATTCAAAGGAAGCAACTGAAAAGGCGAAAGCTCATGCACCTTCAGCTGTTGATGCCGTGCTTGAACAGATCAAGAAGAAACAAAAGCTCAGTGTGCTCGACAAAACCAAAAAGGACTGGGGAGAGTTTAAGGAAGAAAAAGGGTTGGATGAGGAGTTGGATGCCTACAAGAAGAGTTCAAACCAATATCTAGACAAGGTTTCCTTCTTGGAGCGAGCAGATTACCGGGAGTTTGAACGGGAGAGGGATGCACGGCTGGCTGTGCAGGCCAAAAGGAGGCCTGATATGAGGGAGGGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

275

Amino Acids

30.06

Weight (kDa)

8.71

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 190 - 261 1.1e-25 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 283
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 141, 552
AfiI CCNNNNNNNGG 1 cut(s) 801
AgsI TTSAA 6 cut(s) 196, 503, 531, 590, 705, 761
AjnI CCWGG 2 cut(s) 279, 389
Alw21I GWGCWC 2 cut(s) 91, 624
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 3 cut(s) 277, 792, 803
ApeKI GCWGC 4 cut(s) 401, 404, 407, 437
ApoI RAATTY 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 475, 821
AsuC2I CCSGG 4 cut(s) 142, 143, 479, 752
AsuHPI GGTGA 1 cut(s) 213
AsuNHI GCTAGC 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 2 cut(s) 475, 821
AxyI CCTNAGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 2 cut(s) 91, 624
BbvI GCAGC 4 cut(s) 388, 391, 394, 424
BccI CCATC 2 cut(s) 59, 251
BceAI ACGGC 3 cut(s) 137, 566, 794
BciT130I CCWGG 2 cut(s) 281, 391
BcnI CCSGG 4 cut(s) 142, 143, 479, 752
BfaI CTAG 3 cut(s) 378, 398, 716
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 232
BglII AGATCT 1 cut(s) 310
BisI GCNGC 4 cut(s) 402, 405, 408, 438
BlsI GCNGC 4 cut(s) 403, 406, 409, 439
Bme1390I CCNGG 6 cut(s) 142, 143, 281, 391, 479, 752
Bme18I GGWCC 2 cut(s) 475, 821
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 475, 821
BmiI GGNNCC 2 cut(s) 285, 822
BmrFI CCNGG 6 cut(s) 142, 143, 281, 391, 479, 752
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 7 cut(s) 22, 139, 257, 418, 568, 676, 763
BmtI GCTAGC 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 453
BpuMI CCSGG 4 cut(s) 142, 143, 479, 752
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 801
Bse118I RCCGGY 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 647
Bse21I CCTNAGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 281, 391
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 5 cut(s) 70, 433, 679, 691, 778
BseLI CCNNNNNNNGG 1 cut(s) 801
BseMII CTCAG 2 cut(s) 57, 628
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 2 cut(s) 4, 692
BseXI GCAGC 4 cut(s) 388, 391, 394, 424
BsgI GTGCAG 2 cut(s) 63, 809
BshFI GGCC 3 cut(s) 279, 794, 805
BshNI GGYRCC 1 cut(s) 283
BsiHKAI GWGCWC 2 cut(s) 91, 624
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 4 cut(s) 142, 478, 489, 751
BslFI GGGAC 2 cut(s) 286, 494
BslI CCNNNNNNNGG 1 cut(s) 801
BsmFI GGGAC 2 cut(s) 286, 494
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 3 cut(s) 279, 794, 805
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 91, 624
Bsp143I GATC 3 cut(s) 310, 465, 594
BspANI GGCC 3 cut(s) 279, 794, 805
BspCNI CTCAG 2 cut(s) 56, 627
BspLI GGNNCC 2 cut(s) 285, 822
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 488
BsrI ACTGG 1 cut(s) 647
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 310, 465, 594
Bst2UI CCWGG 2 cut(s) 281, 391
Bst6I CTCTTC 2 cut(s) 102, 692
BstC8I GCNNGC 4 cut(s) 399, 741, 783, 792
BstDEI CTNAG 3 cut(s) 43, 186, 614
BstF5I GGATG 5 cut(s) 70, 433, 679, 691, 778
BstKTI GATC 3 cut(s) 313, 468, 597
BstMBI GATC 3 cut(s) 310, 465, 594
BstMWI GCNNNNNNNGC 9 cut(s) 86, 407, 437, 569, 578, 619, 782, 787, 791
BstNI CCWGG 2 cut(s) 281, 391
BstSCI CCNGG 6 cut(s) 140, 141, 279, 389, 477, 750
BstSFI CTRYAG 1 cut(s) 438
BstV1I GCAGC 4 cut(s) 388, 391, 394, 424
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 43
BsuRI GGCC 3 cut(s) 279, 794, 805
BtsCI GGATG 5 cut(s) 70, 433, 679, 691, 778
BtsIMutI CAGTG 1 cut(s) 622
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 4 cut(s) 399, 741, 783, 792
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 2 cut(s) 475, 821
Cfr9I CCCGGG 1 cut(s) 141
CseI GACGC 1 cut(s) 530
CviAII CATG 2 cut(s) 364, 560
DdeI CTNAG 3 cut(s) 43, 186, 614
DpnI GATC 3 cut(s) 312, 467, 596
DpnII GATC 3 cut(s) 310, 465, 594
Eam1104I CTCTTC 2 cut(s) 102, 692
EarI CTCTTC 2 cut(s) 102, 692
Ecl136II GAGCTC 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 805
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 475, 821
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 141, 552
Eco81I CCTNAGG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 279, 389
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 2 cut(s) 367, 563
FaiI YATR 5 cut(s) 271, 365, 561, 812, 826
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 2 cut(s) 286, 494
FatI CATG 2 cut(s) 363, 559
Fnu4HI GCNGC 4 cut(s) 402, 405, 408, 438
FokI GGATG 5 cut(s) 77, 440, 686, 698, 785
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 4 cut(s) 402, 405, 408, 438
FspBI CTAG 3 cut(s) 378, 398, 716
GluI GCNGC 4 cut(s) 402, 405, 408, 438
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 3 cut(s) 279, 794, 805
HapII CCGG 4 cut(s) 142, 478, 489, 751
HgaI GACGC 1 cut(s) 530
Hin1II CATG 2 cut(s) 367, 563
HincII GTYRAC 2 cut(s) 494, 520
HindII GTYRAC 2 cut(s) 494, 520
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 3 cut(s) 74, 299, 527
HpaII CCGG 4 cut(s) 142, 478, 489, 751
HphI GGTGA 1 cut(s) 213
Hpy166II GTNNAC 2 cut(s) 494, 520
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 598, 716
Hpy8I GTNNAC 2 cut(s) 494, 520
HpyAV CCTTC 5 cut(s) 238, 259, 316, 576, 739
HpyCH4V TGCA 7 cut(s) 53, 80, 367, 440, 563, 776, 790
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 407, 437, 569, 578, 619, 782, 787, 791
HpyF3I CTNAG 3 cut(s) 43, 186, 614
Hsp92II CATG 2 cut(s) 367, 563
Kzo9I GATC 3 cut(s) 310, 465, 594
LmnI GCTCC 5 cut(s) 86, 94, 160, 434, 736
Lsp1109I GCAGC 4 cut(s) 388, 391, 394, 424
LweI GCATC 7 cut(s) 22, 139, 257, 418, 568, 676, 763
MaeI CTAG 3 cut(s) 378, 398, 716
MalI GATC 3 cut(s) 312, 467, 596
MboI GATC 3 cut(s) 310, 465, 594
MboII GAAGA 6 cut(s) 89, 134, 304, 613, 671, 709
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 91, 624
MluCI AATT 2 cut(s) 190, 498
MlyI GAGTC 2 cut(s) 83, 308
MmeI TCCRAC 3 cut(s) 242, 651, 663
MseI TTAA 5 cut(s) 206, 329, 423, 507, 654
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 4 cut(s) 142, 478, 489, 751
MspR9I CCNGG 6 cut(s) 142, 143, 281, 391, 479, 752
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 2 cut(s) 281, 391
MwoI GCNNNNNNNGC 9 cut(s) 86, 407, 437, 569, 578, 619, 782, 787, 791
NciI CCSGG 4 cut(s) 142, 143, 479, 752
NdeII GATC 3 cut(s) 310, 465, 594
NheI GCTAGC 1 cut(s) 397
NlaIII CATG 2 cut(s) 367, 563
NlaIV GGNNCC 2 cut(s) 285, 822
NmeAIII GCCGAG 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 232
PceI AGGCCT 1 cut(s) 805
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 527
PflFI GACNNNGTC 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 477
PkrI GCNGC 4 cut(s) 403, 406, 409, 439
PleI GAGTC 2 cut(s) 82, 307
PpsI GAGTC 2 cut(s) 82, 307
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 2 cut(s) 279, 389
PspGI CCWGG 2 cut(s) 279, 389
PspN4I GGNNCC 2 cut(s) 285, 822
PspPI GGNCC 2 cut(s) 475, 821
PstI CTGCAG 1 cut(s) 442
PsuI RGATCY 1 cut(s) 310
PsyI GACNNNGTC 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 572
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 5 cut(s) 206, 329, 423, 507, 654
SatI GCNGC 4 cut(s) 402, 405, 408, 438
Sau3AI GATC 3 cut(s) 310, 465, 594
Sau96I GGNCC 2 cut(s) 475, 821
SchI GAGTC 2 cut(s) 83, 308
ScrFI CCNGG 6 cut(s) 142, 143, 281, 391, 479, 752
SduI GDGCHC 2 cut(s) 91, 624
SfaNI GCATC 7 cut(s) 22, 139, 257, 418, 568, 676, 763
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 2 cut(s) 475, 821
SmaI CCCGGG 1 cut(s) 143
Sse9I AATT 2 cut(s) 190, 498
SseBI AGGCCT 1 cut(s) 805
SspMI CTAG 3 cut(s) 378, 398, 716
SstI GAGCTC 1 cut(s) 91
StuI AGGCCT 1 cut(s) 805
StyD4I CCNGG 6 cut(s) 140, 141, 279, 389, 477, 750
TaqI TCGA 3 cut(s) 8, 30, 624
TasI AATT 2 cut(s) 190, 498
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 5 cut(s) 206, 329, 423, 507, 654
Tru9I TTAA 5 cut(s) 206, 329, 423, 507, 654
TscAI CASTG 1 cut(s) 622
TseI GCWGC 4 cut(s) 401, 404, 407, 437
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 141
TspRI CASTG 1 cut(s) 622
Tth111I GACNNNGTC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 475, 821
XapI RAATTY 1 cut(s) 190
XbaI TCTAGA 1 cut(s) 715
XmaI CCCGGG 1 cut(s) 141
XspI CTAG 3 cut(s) 378, 398, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.