FvH4_4g20890

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009635
Physical Location & Seq
Forward (+)
24017518 .. 24020524
3007 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20890.t1

Sequence Viewer

Length: 828 bp
ATGGCTTCCACCTCCACCTACCGATTCGACGCCTCTACCTCAGGTAGTGCAAGTGATAAGGATGGCATTGAGTCTGCAAATGGAGCTGCTACTCTTCCAAGCTCAAACGCCAAACCTGACGAAACTGATGTAAATGCCCGGGTAGATGCTGTGTGGGAGCAAATGAATAAAGGAATATCTAATAAGAATTTCAAGGATTTATTAAAGAAATCGCATTCACCTGCGAATAAAACTCCAAAGAAGGCATCATCTGATGGTTGGAAGGCATATCTTGGCCTGGCACCAAAGAAGACAGAGTCCCCAAAAGAAGATCTATCACAGAAGGGATCAAGTGTCTTACAGAACAAATCTAGTGATATTGTCATGCAGGACAGCTCTAGTGAAAATGCCAGGAAGCTAGCCGCTGCTGCTCTCGTAGAAGTTAAGGATGCTGGAGCTGCAGCATCAGGTAGAGGGAAAGTTGAGATCACAGAGGTCCGGGACTTCGCAGGTCAACAAATTGAAGTTAAAAAGCTTGTTGATGCTGATTCAAAGGAGGCATCTGATAAGGTCAAAGCTCATGCACCTTCAGCTGTTGATGCCATGCTTGAACAGATCAAGAAGAAACCAAAGCTCAGTGTGCTCGACAAGACGAAACAGGACTGGGGAGAGTTTAAGGAAGAAAAAGGATTGGACGAGGAGTTGGATGCTTACAAGAAGAGTTCCAACCAATATCTAGACAAGGTTTCCTTCTTGGAGCGAGCAGATTACCGGGAGTTTGAACGGGAAAGGGATGCACGGCTGGCTGTGCAGGCCAAAAGGAGGCCTGATATGCGGGAGGGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

276

Amino Acids

30.09

Weight (kDa)

8.42

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 190 - 261 3.9e-26 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 229
Acc36I ACCTGC 2 cut(s) 229, 479
AccB1I GGYRCC 1 cut(s) 280
AciI CCGC 2 cut(s) 402, 814
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 552
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 801
AgsI TTSAA 5 cut(s) 193, 503, 531, 590, 761
AjnI CCWGG 2 cut(s) 276, 389
AluBI AGCT 9 cut(s) 86, 102, 375, 397, 437, 514, 557, 572, 613
AluI AGCT 9 cut(s) 86, 102, 375, 397, 437, 514, 557, 572, 613
Alw21I GWGCWC 1 cut(s) 624
AlwI GGATC 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 3 cut(s) 274, 792, 803
ApeKI GCWGC 5 cut(s) 86, 404, 407, 437, 440
ApoI RAATTY 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 475, 821
AsuC2I CCSGG 4 cut(s) 139, 140, 479, 752
AsuHPI GGTGA 1 cut(s) 210
AsuNHI GCTAGC 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 2 cut(s) 475, 821
AxyI CCTNAGG 1 cut(s) 40
BanI GGYRCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 5 cut(s) 73, 391, 394, 424, 452
BccI CCATC 2 cut(s) 56, 248
BceAI ACGGC 1 cut(s) 794
BciT130I CCWGG 2 cut(s) 278, 391
BcnI CCSGG 4 cut(s) 139, 140, 479, 752
BfaI CTAG 4 cut(s) 351, 378, 398, 716
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 2 cut(s) 229, 479
BglII AGATCT 1 cut(s) 310
BisI GCNGC 6 cut(s) 87, 402, 405, 408, 438, 441
BlsI GCNGC 6 cut(s) 88, 403, 406, 409, 439, 442
Bme1390I CCNGG 6 cut(s) 139, 140, 278, 391, 479, 752
Bme18I GGWCC 2 cut(s) 475, 821
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 475, 821
BmiI GGNNCC 2 cut(s) 282, 822
BmrFI CCNGG 6 cut(s) 139, 140, 278, 391, 479, 752
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 9 cut(s) 136, 254, 418, 452, 511, 548, 568, 676, 763
BmtI GCTAGC 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 453
BpuMI CCSGG 4 cut(s) 139, 140, 479, 752
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 801
Bse1I ACTGG 1 cut(s) 647
Bse21I CCTNAGG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 278, 391
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 4 cut(s) 67, 433, 691, 778
BseLI CCNNNNNNNGG 1 cut(s) 801
BseMII CTCAG 2 cut(s) 54, 628
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 5 cut(s) 73, 391, 394, 424, 452
BsgI GTGCAG 1 cut(s) 809
BshFI GGCC 3 cut(s) 276, 794, 805
BshNI GGYRCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 3 cut(s) 139, 478, 751
BslFI GGGAC 2 cut(s) 283, 494
BslI CCNNNNNNNGG 1 cut(s) 801
BsmFI GGGAC 2 cut(s) 283, 494
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 3 cut(s) 276, 794, 805
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 624
Bsp143I GATC 4 cut(s) 310, 326, 465, 594
BspACI CCGC 2 cut(s) 402, 814
BspANI GGCC 3 cut(s) 276, 794, 805
BspCNI CTCAG 2 cut(s) 53, 627
BspLI GGNNCC 2 cut(s) 282, 822
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 2 cut(s) 229, 479
BspOI GCTAGC 1 cut(s) 401
BspPI GGATC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 647
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 4 cut(s) 310, 326, 465, 594
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 278, 391
Bst6I CTCTTC 2 cut(s) 99, 692
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 4 cut(s) 399, 741, 783, 792
BstDEI CTNAG 2 cut(s) 40, 614
BstF5I GGATG 4 cut(s) 67, 433, 691, 778
BstKTI GATC 4 cut(s) 313, 329, 468, 597
BstMBI GATC 4 cut(s) 310, 326, 465, 594
BstNI CCWGG 2 cut(s) 278, 391
BstSCI CCNGG 6 cut(s) 137, 138, 276, 389, 477, 750
BstSFI CTRYAG 1 cut(s) 438
BstV1I GCAGC 5 cut(s) 73, 391, 394, 424, 452
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 40
BsuRI GGCC 3 cut(s) 276, 794, 805
BtsCI GGATG 4 cut(s) 67, 433, 691, 778
BtsIMutI CAGTG 1 cut(s) 622
BveI ACCTGC 2 cut(s) 229, 479
Cac8I GCNNGC 4 cut(s) 399, 741, 783, 792
Cfr13I GGNCC 2 cut(s) 475, 821
Cfr9I CCCGGG 1 cut(s) 138
CseI GACGC 1 cut(s) 38
CviAII CATG 3 cut(s) 364, 560, 583
DdeI CTNAG 2 cut(s) 40, 614
DpnI GATC 4 cut(s) 312, 328, 467, 596
DpnII GATC 4 cut(s) 310, 326, 465, 594
Eam1104I CTCTTC 2 cut(s) 99, 692
EarI CTCTTC 2 cut(s) 99, 692
Eco147I AGGCCT 1 cut(s) 805
Eco47I GGWCC 2 cut(s) 475, 821
Eco57I CTGAAG 1 cut(s) 552
Eco81I CCTNAGG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 138
EcoRII CCWGG 2 cut(s) 276, 389
FaeI CATG 3 cut(s) 367, 563, 586
FaiI YATR 6 cut(s) 268, 365, 561, 584, 812, 826
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 2 cut(s) 283, 494
FatI CATG 3 cut(s) 363, 559, 582
FauI CCCGC 1 cut(s) 807
Fnu4HI GCNGC 6 cut(s) 87, 402, 405, 408, 438, 441
FokI GGATG 4 cut(s) 74, 440, 698, 785
Fsp4HI GCNGC 6 cut(s) 87, 402, 405, 408, 438, 441
FspBI CTAG 4 cut(s) 351, 378, 398, 716
GluI GCNGC 6 cut(s) 87, 402, 405, 408, 438, 441
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 3 cut(s) 276, 794, 805
HapII CCGG 3 cut(s) 139, 478, 751
HgaI GACGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 367, 563, 586
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 4 cut(s) 24, 71, 296, 527
HpaII CCGG 3 cut(s) 139, 478, 751
HphI GGTGA 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 2 cut(s) 253, 544
Hpy188III TCNNGA 2 cut(s) 598, 716
Hpy8I GTNNAC 1 cut(s) 494
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 235, 256, 316, 576, 739
HpyCH4V TGCA 7 cut(s) 50, 77, 367, 440, 563, 776, 790
HpyF3I CTNAG 2 cut(s) 40, 614
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 367, 563, 586
Kzo9I GATC 4 cut(s) 310, 326, 465, 594
LmnI GCTCC 4 cut(s) 83, 157, 434, 736
Lsp1109I GCAGC 5 cut(s) 73, 391, 394, 424, 452
LweI GCATC 9 cut(s) 136, 254, 418, 452, 511, 548, 568, 676, 763
MaeI CTAG 4 cut(s) 351, 378, 398, 716
MalI GATC 4 cut(s) 312, 328, 467, 596
MboI GATC 4 cut(s) 310, 326, 465, 594
MboII GAAGA 6 cut(s) 86, 301, 320, 613, 671, 709
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 2 cut(s) 187, 498
MlyI GAGTC 2 cut(s) 80, 305
MmeI TCCRAC 3 cut(s) 239, 663, 729
MnlI CCTC 9 cut(s) 22, 43, 49, 446, 466, 529, 670, 795, 811
MseI TTAA 4 cut(s) 203, 423, 507, 654
MspA1I CMGCKG 2 cut(s) 404, 572
MspI CCGG 3 cut(s) 139, 478, 751
MspR9I CCNGG 6 cut(s) 139, 140, 278, 391, 479, 752
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 2 cut(s) 278, 391
NciI CCSGG 4 cut(s) 139, 140, 479, 752
NdeII GATC 4 cut(s) 310, 326, 465, 594
NheI GCTAGC 1 cut(s) 397
NlaIII CATG 3 cut(s) 367, 563, 586
NlaIV GGNNCC 2 cut(s) 282, 822
PaqCI CACCTGC 1 cut(s) 229
PceI AGGCCT 1 cut(s) 805
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 24, 527
PflFI GACNNNGTC 1 cut(s) 295
PfoI TCCNGGA 1 cut(s) 477
PkrI GCNGC 6 cut(s) 88, 403, 406, 409, 439, 442
PleI GAGTC 2 cut(s) 79, 304
PpsI GAGTC 2 cut(s) 79, 304
Psp6I CCWGG 2 cut(s) 276, 389
PspGI CCWGG 2 cut(s) 276, 389
PspN4I GGNNCC 2 cut(s) 282, 822
PspPI GGNCC 2 cut(s) 475, 821
PstI CTGCAG 1 cut(s) 442
PsuI RGATCY 1 cut(s) 310
PsyI GACNNNGTC 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 572
SaqAI TTAA 4 cut(s) 203, 423, 507, 654
SatI GCNGC 6 cut(s) 87, 402, 405, 408, 438, 441
Sau3AI GATC 4 cut(s) 310, 326, 465, 594
Sau96I GGNCC 2 cut(s) 475, 821
SchI GAGTC 2 cut(s) 80, 305
ScrFI CCNGG 6 cut(s) 139, 140, 278, 391, 479, 752
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 9 cut(s) 136, 254, 418, 452, 511, 548, 568, 676, 763
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 2 cut(s) 475, 821
SmaI CCCGGG 1 cut(s) 140
Sse9I AATT 2 cut(s) 187, 498
SseBI AGGCCT 1 cut(s) 805
SsiI CCGC 2 cut(s) 402, 814
SspMI CTAG 4 cut(s) 351, 378, 398, 716
StuI AGGCCT 1 cut(s) 805
StyD4I CCNGG 6 cut(s) 137, 138, 276, 389, 477, 750
TaqI TCGA 2 cut(s) 27, 624
TasI AATT 2 cut(s) 187, 498
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 2 cut(s) 24, 527
Tru1I TTAA 4 cut(s) 203, 423, 507, 654
Tru9I TTAA 4 cut(s) 203, 423, 507, 654
TscAI CASTG 1 cut(s) 622
TseI GCWGC 5 cut(s) 86, 404, 407, 437, 440
TspDTI ATGAA 1 cut(s) 179
TspMI CCCGGG 1 cut(s) 138
TspRI CASTG 1 cut(s) 622
Tth111I GACNNNGTC 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 475, 821
XapI RAATTY 1 cut(s) 187
XbaI TCTAGA 1 cut(s) 715
XmaI CCCGGG 1 cut(s) 138
XspI CTAG 4 cut(s) 351, 378, 398, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.