Rh4BG273000

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009635
Physical Location & Seq
Forward (+)
44725927 .. 44730914
4988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG273000.1

Sequence Viewer

Length: 678 bp
ATGTGGGAGCAAATGAATAAAGGAATATCTACTAAGAATTTCAAGGATTTATTAAAGAAATCTCATTCACCTGCGAATAAAACTCCAAAGAAGGCATCGTCTGATGGTTGGAAGGCATATCTCGGCCTGGCACCAAAGAAGATGGAGTCCCCAAAAGAAGATCTATCACAGAAGGGATTAAGTGTCGCACAGAACAACACTACTGATATTGTCATGCAGGACAGCTCTAGTGAGAATGCCAGGAAGCTAGCTGCTGCTGCCCTCGTAGAAGTTAAGGATGCTGGAGCTGCAGTATTAGGTAGAGGGAAAGTTGAGATCACAGAGGTCCGGGACTTTGCCGGTCAACAAATTGAAGTTAAGAAGCTTGTTGACGCTGATTCAAAGGAAGCATCTGAAAAGGCGAAAGCTCATGCACCTTCAGCTGTTGATGCCGTGCTTGAACAGATCAAGAAGAAACAAAAGCTCAGTGTGCTCGACAAAACCAAAAAGGACTGGGGAGAGTTTAAGGAAGAAAAAGGGTTGGATGAGGAGTTGGATGCTTACAAGAAGAGTTCAAACCAATATCTAGACAAGGTTTCCTTCTTGGAGCGAGCAGATTATCGGGAGTTTGAACGGGAGAGGGATGCACGGCTGGCTGTGCAGGCCAAAAGGAGGCCTGATATGAGGGAAGGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

225

Amino Acids

25.15

Weight (kDa)

9.18

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 140 - 211 7.5e-26 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 651
AgsI TTSAA 6 cut(s) 43, 353, 381, 440, 555, 611
AjnI CCWGG 2 cut(s) 126, 239
AluBI AGCT 8 cut(s) 225, 247, 251, 287, 364, 407, 422, 463
AluI AGCT 8 cut(s) 225, 247, 251, 287, 364, 407, 422, 463
Alw21I GWGCWC 1 cut(s) 474
AoxI GGCC 3 cut(s) 124, 642, 653
ApeKI GCWGC 4 cut(s) 251, 254, 257, 287
ApoI RAATTY 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 325, 671
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 60
AsuNHI GCTAGC 1 cut(s) 247
AvaII GGWCC 2 cut(s) 325, 671
BanI GGYRCC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 4 cut(s) 238, 241, 244, 274
BccI CCATC 2 cut(s) 98, 136
BceAI ACGGC 2 cut(s) 416, 644
BciT130I CCWGG 2 cut(s) 128, 241
BcnI CCSGG 1 cut(s) 329
BfaI CTAG 3 cut(s) 228, 248, 566
BfmI CTRYAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 79
BglII AGATCT 1 cut(s) 160
BisI GCNGC 4 cut(s) 252, 255, 258, 288
BlsI GCNGC 4 cut(s) 253, 256, 259, 289
Bme1390I CCNGG 3 cut(s) 128, 241, 329
Bme18I GGWCC 2 cut(s) 325, 671
BmgT120I GGNCC 2 cut(s) 325, 671
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 3 cut(s) 128, 241, 329
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 6 cut(s) 104, 268, 398, 418, 526, 613
BmtI GCTAGC 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 329
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 651
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 497
BseBI CCWGG 2 cut(s) 128, 241
BseGI GGATG 4 cut(s) 283, 529, 541, 628
BseLI CCNNNNNNNGG 1 cut(s) 651
BseMII CTCAG 1 cut(s) 478
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 4 cut(s) 238, 241, 244, 274
BsgI GTGCAG 1 cut(s) 659
BshFI GGCC 3 cut(s) 126, 644, 655
BshNI GGYRCC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 2 cut(s) 328, 339
BslFI GGGAC 2 cut(s) 133, 344
BslI CCNNNNNNNGG 1 cut(s) 651
BsmFI GGGAC 2 cut(s) 133, 344
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 3 cut(s) 126, 644, 655
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 3 cut(s) 160, 315, 444
BspANI GGCC 3 cut(s) 126, 644, 655
BspCNI CTCAG 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 338
BssMI GATC 3 cut(s) 160, 315, 444
Bst2UI CCWGG 2 cut(s) 128, 241
Bst6I CTCTTC 1 cut(s) 542
BstC8I GCNNGC 4 cut(s) 249, 591, 633, 642
BstDEI CTNAG 2 cut(s) 33, 464
BstF5I GGATG 4 cut(s) 283, 529, 541, 628
BstKTI GATC 3 cut(s) 163, 318, 447
BstMBI GATC 3 cut(s) 160, 315, 444
BstMWI GCNNNNNNNGC 8 cut(s) 257, 287, 419, 428, 469, 632, 637, 641
BstNI CCWGG 2 cut(s) 128, 241
BstSCI CCNGG 3 cut(s) 126, 239, 327
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 4 cut(s) 238, 241, 244, 274
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 3 cut(s) 126, 644, 655
BtsCI GGATG 4 cut(s) 283, 529, 541, 628
BtsIMutI CAGTG 1 cut(s) 472
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 4 cut(s) 249, 591, 633, 642
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 325, 671
CseI GACGC 1 cut(s) 380
CviAII CATG 2 cut(s) 214, 410
DdeI CTNAG 2 cut(s) 33, 464
DpnI GATC 3 cut(s) 162, 317, 446
DpnII GATC 3 cut(s) 160, 315, 444
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 655
Eco47I GGWCC 2 cut(s) 325, 671
Eco57I CTGAAG 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 126, 239
FaeI CATG 2 cut(s) 217, 413
FaiI YATR 5 cut(s) 118, 215, 411, 662, 676
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 2 cut(s) 133, 344
FatI CATG 2 cut(s) 213, 409
Fnu4HI GCNGC 4 cut(s) 252, 255, 258, 288
FokI GGATG 4 cut(s) 290, 536, 548, 635
Fsp4HI GCNGC 4 cut(s) 252, 255, 258, 288
FspBI CTAG 3 cut(s) 228, 248, 566
GluI GCNGC 4 cut(s) 252, 255, 258, 288
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 3 cut(s) 126, 644, 655
HapII CCGG 2 cut(s) 328, 339
HgaI GACGC 1 cut(s) 380
Hin1II CATG 2 cut(s) 217, 413
HincII GTYRAC 2 cut(s) 344, 370
HindII GTYRAC 2 cut(s) 344, 370
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 2 cut(s) 146, 377
HpaII CCGG 2 cut(s) 328, 339
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 344, 370
Hpy188I TCNGA 2 cut(s) 103, 394
Hpy188III TCNNGA 3 cut(s) 448, 566, 602
Hpy8I GTNNAC 2 cut(s) 344, 370
HpyAV CCTTC 6 cut(s) 85, 106, 166, 426, 589, 662
HpyCH4V TGCA 5 cut(s) 217, 290, 413, 626, 640
HpyF10VI GCNNNNNNNGC 8 cut(s) 257, 287, 419, 428, 469, 632, 637, 641
HpyF3I CTNAG 2 cut(s) 33, 464
Hsp92II CATG 2 cut(s) 217, 413
Kzo9I GATC 3 cut(s) 160, 315, 444
LmnI GCTCC 3 cut(s) 7, 284, 586
Lsp1109I GCAGC 4 cut(s) 238, 241, 244, 274
LweI GCATC 6 cut(s) 104, 268, 398, 418, 526, 613
MaeI CTAG 3 cut(s) 228, 248, 566
MalI GATC 3 cut(s) 162, 317, 446
MboI GATC 3 cut(s) 160, 315, 444
MboII GAAGA 5 cut(s) 151, 170, 463, 521, 559
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 2 cut(s) 37, 348
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 3 cut(s) 89, 501, 513
MnlI CCTC 7 cut(s) 272, 296, 316, 520, 612, 645, 657
MseI TTAA 5 cut(s) 53, 179, 273, 357, 504
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 2 cut(s) 328, 339
MspR9I CCNGG 3 cut(s) 128, 241, 329
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 2 cut(s) 128, 241
MwoI GCNNNNNNNGC 8 cut(s) 257, 287, 419, 428, 469, 632, 637, 641
NciI CCSGG 1 cut(s) 329
NdeII GATC 3 cut(s) 160, 315, 444
NheI GCTAGC 1 cut(s) 247
NlaIII CATG 2 cut(s) 217, 413
NlaIV GGNNCC 1 cut(s) 132
NmeAIII GCCGAG 1 cut(s) 102
PaqCI CACCTGC 1 cut(s) 79
PceI AGGCCT 1 cut(s) 655
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 4 cut(s) 253, 256, 259, 289
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 126, 239
PspGI CCWGG 2 cut(s) 126, 239
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 2 cut(s) 325, 671
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 422
SaqAI TTAA 5 cut(s) 53, 179, 273, 357, 504
SatI GCNGC 4 cut(s) 252, 255, 258, 288
Sau3AI GATC 3 cut(s) 160, 315, 444
Sau96I GGNCC 2 cut(s) 325, 671
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 3 cut(s) 128, 241, 329
SduI GDGCHC 1 cut(s) 474
SfaNI GCATC 6 cut(s) 104, 268, 398, 418, 526, 613
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 2 cut(s) 325, 671
Sse9I AATT 2 cut(s) 37, 348
SseBI AGGCCT 1 cut(s) 655
SspMI CTAG 3 cut(s) 228, 248, 566
StuI AGGCCT 1 cut(s) 655
StyD4I CCNGG 3 cut(s) 126, 239, 327
TaqI TCGA 1 cut(s) 474
TasI AATT 2 cut(s) 37, 348
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 5 cut(s) 53, 179, 273, 357, 504
Tru9I TTAA 5 cut(s) 53, 179, 273, 357, 504
TscAI CASTG 1 cut(s) 472
TseI GCWGC 4 cut(s) 251, 254, 257, 287
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 472
VpaK11BI GGWCC 2 cut(s) 325, 671
XapI RAATTY 1 cut(s) 37
XbaI TCTAGA 1 cut(s) 565
XspI CTAG 3 cut(s) 228, 248, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.