Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009635

Physical Location & Seq

Genomic Coordinates Reverse (-)

8860402 .. 8863361

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G111000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTGCCACCACCACCAACGCTCTCGGTGCCTCAAGTTCAGTTTGGTTTTCTGGTTCAGGTACTGCAAATGAAAAGGATGCTTTACCAATCGAGTCTACCAATGGAGCTGTTCCCCTTCCAAGCTTAGAGACTAAACCTGAACAGACTGATGTAAAATCTCGGGTAGATGCCATGTGGGAGCAAATGAATAAAGGAGTATCTAATAAGAAATTCAAGGATTTATTAAAGAAGTCTTCAACTGTGAATAAAACTCCAAAGAAGGCATCTGATAACTGGAAGGCATATCTGGGCCTGGCACCAAAGAAGGCAGAGTCACCAAAAGAAAATGCACCACAGAAGGGATCAAATGTCACGCAGAACAGCTCTAGTGATGATGTCGTGCAGGACAGCTCTAGTGACAAGGCCAGGAGGCTTGCTGCTGCTGCTCTTGTAGAAGTTAAGGATGCTGCAGCTGCAGCATCAGGCAGAGGGAAAGTTGAGATCACAGAGGTTCGGGATTTTGCCGGTCAAGAAATTGAATATAAGAAGCTTGTTGATGCTGATTCAAAGGAAGCATCTGAAAAGGCGAAAGCTCCAGCAGCTTCAGCTGTGGATGCAGTGCTCGAACAGATTAAGAAGAAACAAAAGCTCAGTGTGCTTGACAAAACAAAAAAGGACTGGGGGGAGTTTAAGGAGGAAAAAGGGTTGGATGAGGAGTTGGATGCTTACAAGAAGAGTTCAAACCAATATTTAGATAAGGTAAACTTCTTGCAGAGAGCAGATTTCCGGGAGTTTGAACGGGAGAGGGATGCACGGCTAGCCTTGCAGTCGAAAAGGAGGCCAGATATGCGGGAGGATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCNT

Protein Analysis

282

Amino Acids

30.86

Weight (kDa)

8.89

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G30490 AT5G30490 AT5G30490
fragaria_vesca	FvH4_4g20890 FvH4_4g20890
malus_domestica	MD13G1147500.v1.1 MD16G1145900.v1.1
prunus_persica	Prupe.1G111000_v2.0.a1 Prupe.1G111000_v2.0.a1
pyrus_communis	pycom13g12700 pycom16g12510
rosa_chinensis	RchiOBHm_Chr4g0426321
rosa_laevigata	RLG00000007303
rosa_multiflora	Rmu_sc0000730.1_g000045 Rmu_sc0007942.1_g000012
rosa_roxburghii	Rroxscaffold_5G00368330
rosa_rugosa	Rorug04G0210100
rosa_samantha	Rh4AG267100 Rh4BG273000 Rh4CG287200 Rh4DG269700
rosa_wichuraiana	Rw4G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	29, 298
AccI	GTMKAC	1 cut(s)	98
AciI	CCGC	1 cut(s)	832
AclWI	GGATC	2 cut(s)	352, 833
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	6 cut(s)	217, 240, 521, 549, 723, 779
AjnI	CCWGG	2 cut(s)	294, 407
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	352, 833
AlwNI	CAGNNNCTG	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	3 cut(s)	292, 405, 821
ApeKI	GCWGC	9 cut(s)	5, 419, 422, 425, 449, 452, 455, 458, 581
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	770
AsuHPI	GGTGA	1 cut(s)	309
AsuNHI	GCTAGC	1 cut(s)	799
AvaI	CYCGRG	1 cut(s)	162
BamHI	GGATCC	1 cut(s)	838
BanI	GGYRCC	2 cut(s)	29, 298
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	8 cut(s)	406, 409, 412, 436, 442, 464, 470, 593
BceAI	ACGGC	1 cut(s)	812
BciT130I	CCWGG	2 cut(s)	296, 409
BcnI	CCSGG	1 cut(s)	770
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	3 cut(s)	369, 396, 800
BfmI	CTRYAG	2 cut(s)	450, 456
BisI	GCNGC	9 cut(s)	6, 420, 423, 426, 450, 453, 456, 459, 582
BlsI	GCNGC	9 cut(s)	7, 421, 424, 427, 451, 454, 457, 460, 583
Bme1390I	CCNGG	3 cut(s)	296, 409, 770
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	31, 300, 840
BmrFI	CCNGG	3 cut(s)	296, 409, 770
BmrI	ACTGGG	1 cut(s)	670
BmtI	GCTAGC	1 cut(s)	803
BmuI	ACTGGG	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	770
BsaXI	ACNNNNNCTCC	1 cut(s)	827
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	2 cut(s)	281, 665
BseBI	CCWGG	2 cut(s)	296, 409
BseGI	GGATG	6 cut(s)	85, 451, 601, 697, 709, 796
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	646
BseNI	ACTGG	2 cut(s)	281, 665
BseRI	GAGGAG	1 cut(s)	710
BseXI	GCAGC	8 cut(s)	406, 409, 412, 436, 442, 464, 470, 593
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	3 cut(s)	294, 407, 823
BshNI	GGYRCC	2 cut(s)	29, 298
BsiHKAI	GWGCWC	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	507, 769
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	294, 407, 823
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	3 cut(s)	344, 483, 838
BspACI	CCGC	1 cut(s)	832
BspANI	GGCC	3 cut(s)	294, 407, 823
BspCNI	CTCAG	1 cut(s)	645
BspLI	GGNNCC	3 cut(s)	31, 300, 840
BspMAI	CTGCAG	2 cut(s)	454, 460
BspOI	GCTAGC	1 cut(s)	803
BspPI	GGATC	2 cut(s)	352, 833
BspT107I	GGYRCC	2 cut(s)	29, 298
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	2 cut(s)	281, 665
BssAI	RCCGGY	1 cut(s)	506
BssMI	GATC	3 cut(s)	344, 483, 838
Bst2UI	CCWGG	2 cut(s)	296, 409
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	417, 801
BstDEI	CTNAG	2 cut(s)	127, 632
BstF5I	GGATG	6 cut(s)	85, 451, 601, 697, 709, 796
BstKTI	GATC	3 cut(s)	347, 486, 841
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	344, 483, 838
BstNI	CCWGG	2 cut(s)	296, 409
BstSCI	CCNGG	3 cut(s)	294, 407, 768
BstSFI	CTRYAG	2 cut(s)	450, 456
BstV1I	GCAGC	8 cut(s)	406, 409, 412, 436, 442, 464, 470, 593
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
BsuRI	GGCC	3 cut(s)	294, 407, 823
BtsCI	GGATG	6 cut(s)	85, 451, 601, 697, 709, 796
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	606, 640
Cac8I	GCNNGC	2 cut(s)	417, 801
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	1 cut(s)	175
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	2 cut(s)	127, 632
DpnI	GATC	3 cut(s)	346, 485, 840
DpnII	GATC	3 cut(s)	344, 483, 838
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	294, 407
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	176, 286, 525, 830
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	825
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	9 cut(s)	6, 420, 423, 426, 450, 453, 456, 459, 582
FokI	GGATG	6 cut(s)	92, 458, 608, 704, 716, 803
Fsp4HI	GCNGC	9 cut(s)	6, 420, 423, 426, 450, 453, 456, 459, 582
FspBI	CTAG	3 cut(s)	369, 396, 800
GluI	GCNGC	9 cut(s)	6, 420, 423, 426, 450, 453, 456, 459, 582
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	3 cut(s)	294, 407, 823
HapII	CCGG	2 cut(s)	507, 769
Hin1II	CATG	1 cut(s)	178
HindIII	AAGCTT	2 cut(s)	124, 530
HinfI	GANTC	3 cut(s)	95, 314, 545
HpaII	CCGG	2 cut(s)	507, 769
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	2 cut(s)	99, 745
Hpy188I	TCNGA	2 cut(s)	271, 562
Hpy188III	TCNNGA	2 cut(s)	497, 512
Hpy8I	GTNNAC	2 cut(s)	99, 745
HpyAV	CCTTC	5 cut(s)	128, 256, 274, 301, 334
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	9 cut(s)	68, 332, 385, 452, 458, 599, 754, 794, 808
HpyF3I	CTNAG	2 cut(s)	127, 632
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	344, 483, 838
LmnI	GCTCC	3 cut(s)	107, 181, 580
Lsp1109I	GCAGC	8 cut(s)	406, 409, 412, 436, 442, 464, 470, 593
MaeI	CTAG	3 cut(s)	369, 396, 800
MaeIII	GTNAC	3 cut(s)	315, 352, 398
MalI	GATC	3 cut(s)	346, 485, 840
MboI	GATC	3 cut(s)	344, 483, 838
MboII	GAAGA	3 cut(s)	228, 631, 727
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	2 cut(s)	212, 516
MlyI	GAGTC	2 cut(s)	104, 323
MmeI	TCCRAC	2 cut(s)	669, 681
MnlI	CCTC	9 cut(s)	43, 405, 464, 484, 670, 688, 780, 813, 829
MseI	TTAA	4 cut(s)	227, 441, 615, 672
MspA1I	CMGCKG	2 cut(s)	455, 590
MspI	CCGG	2 cut(s)	507, 769
MspR9I	CCNGG	3 cut(s)	296, 409, 770
MvaI	CCWGG	2 cut(s)	296, 409
NciI	CCSGG	1 cut(s)	770
NdeII	GATC	3 cut(s)	344, 483, 838
NheI	GCTAGC	1 cut(s)	799
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	3 cut(s)	31, 300, 840
NmuCI	GTSAC	3 cut(s)	315, 352, 398
PfeI	GAWTC	1 cut(s)	545
PfoI	TCCNGGA	1 cut(s)	768
PkrI	GCNGC	9 cut(s)	7, 421, 424, 427, 451, 454, 457, 460, 583
PleI	GAGTC	2 cut(s)	103, 322
PpsI	GAGTC	2 cut(s)	103, 322
Psp6I	CCWGG	2 cut(s)	294, 407
PspGI	CCWGG	2 cut(s)	294, 407
PspN4I	GGNNCC	3 cut(s)	31, 300, 840
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	2 cut(s)	454, 460
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	838
PvuII	CAGCTG	2 cut(s)	455, 590
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	227, 441, 615, 672
SatI	GCNGC	9 cut(s)	6, 420, 423, 426, 450, 453, 456, 459, 582
Sau3AI	GATC	3 cut(s)	344, 483, 838
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	2 cut(s)	104, 323
ScrFI	CCNGG	3 cut(s)	296, 409, 770
SduI	GDGCHC	1 cut(s)	606
SfcI	CTRYAG	2 cut(s)	450, 456
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	212, 516
SsiI	CCGC	1 cut(s)	832
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	3 cut(s)	369, 396, 800
StyD4I	CCNGG	3 cut(s)	294, 407, 768
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	3 cut(s)	93, 606, 812
TasI	AATT	2 cut(s)	212, 516
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	4 cut(s)	227, 441, 615, 672
Tru9I	TTAA	4 cut(s)	227, 441, 615, 672
TscAI	CASTG	2 cut(s)	606, 640
TseFI	GTSAC	3 cut(s)	315, 352, 398
TseI	GCWGC	9 cut(s)	5, 419, 422, 425, 449, 452, 455, 458, 581
Tsp45I	GTSAC	3 cut(s)	315, 352, 398
TspDTI	ATGAA	2 cut(s)	87, 203
TspGWI	ACGGA	1 cut(s)	831
TspRI	CASTG	2 cut(s)	606, 640
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	3 cut(s)	369, 396, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.