Rroxscaffold_5G00368330

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009635
Physical Location & Seq
Forward (+)
50147088 .. 50149949
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368330.1

Sequence Viewer

Length: 897 bp
ATGGCTTCGACCTCCTCCACCAACCCATTCGATGCCTCAACCTCAGGTAGCGCAAGTGAAAAGGATGGCGTTGAGTCTGCACAGGGAGCTGTTACTCTTCCAAGCTCAAACTCAAAACCTGAAGAAACCGATGTAAAAGCCCGGGTAGATGCCATGTGGGAGCAAATGAATAAAGGAATATCTACTAAGAATTTCAAGGATTTATTACAGAAATCTCATTCACCTGCGAATAAAACTCCAAAGAAGGCATCGTCTGATGGTTGGAAGGCATATCTCGGCCTGGCACCAAAGAAGACGGAGTCCCCAAAAGAAGATCTATCACAGAAGGGATTAAGTGTTGCACAGAACAACACTCCTGATATTGTCATGCAGGACAGCTCTAGTGAGAAGGCCAGGAAGCTAGCTGCTGCTGCCCTCGTAGAAGTTAAGGATGCTGGAGCTGCAGTATTAGGTAGAGGGAAAGTTGAGGTTAGTACATTGCTTCGTTCTCCTGCTCTTTTGCACTCTGGTGCCATATGTTGTGGGGTGGGGGTGATCACAGAGGTCCGGGACTTTGCCGGTCAGCAAATTGAAGTTAAGAAGCTTGTTGACGCTGATTCAAAGGAAGCATCTGAAAAGGCGAAAGCTCATGCACCTTCAGCTGTTGATGCCGTGCTTGAACAGATCAAGAAGAAACAAAAGCTCAGTGTGCTCGACAAAACCAAAAAGGACTGGGGAGAGTTTAAGGAAGAAAAAGGGTTGGATGAGGAGTTGGATGCTTACAAGAAGAGTTCAAACCAATATCTAGACAAGGTTTCCTTCTTGGAGCGAGCAGATTACCGGGAGTTTGAACGGGAGAGGGATGCACGGCTGGCTGTGCAGGCCAAAAGGAGGCCTGATATGAGGGAGGGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

298

Amino Acids

32.36

Weight (kDa)

8.57

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 213 - 284 1.3e-25 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 232
AccB1I GGYRCC 2 cut(s) 283, 509
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 141, 621
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 1 cut(s) 870
AgsI TTSAA 6 cut(s) 196, 572, 600, 659, 774, 830
AjnI CCWGG 2 cut(s) 279, 392
AleI CACNNNNGTG 1 cut(s) 507
Alw21I GWGCWC 1 cut(s) 693
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 4 cut(s) 277, 390, 861, 872
ApeKI GCWGC 4 cut(s) 404, 407, 410, 440
ApoI RAATTY 1 cut(s) 190
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 544, 890
AsuC2I CCSGG 4 cut(s) 142, 143, 548, 821
AsuHPI GGTGA 2 cut(s) 213, 544
AsuNHI GCTAGC 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 2 cut(s) 544, 890
AxyI CCTNAGG 1 cut(s) 43
BanI GGYRCC 2 cut(s) 283, 509
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 4 cut(s) 391, 394, 397, 427
BccI CCATC 2 cut(s) 59, 251
BceAI ACGGC 2 cut(s) 635, 863
BciT130I CCWGG 2 cut(s) 281, 394
BclI TGATCA 1 cut(s) 534
BcnI CCSGG 4 cut(s) 142, 143, 548, 821
BfaI CTAG 3 cut(s) 381, 401, 785
BfmI CTRYAG 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 232
BglII AGATCT 1 cut(s) 313
BisI GCNGC 4 cut(s) 405, 408, 411, 441
BlsI GCNGC 4 cut(s) 406, 409, 412, 442
Bme1390I CCNGG 6 cut(s) 142, 143, 281, 394, 548, 821
Bme18I GGWCC 2 cut(s) 544, 890
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 544, 890
BmiI GGNNCC 3 cut(s) 285, 511, 891
BmrFI CCNGG 6 cut(s) 142, 143, 281, 394, 548, 821
BmrI ACTGGG 1 cut(s) 721
BmsI GCATC 8 cut(s) 22, 139, 257, 421, 617, 637, 745, 832
BmtI GCTAGC 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 721
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 456
BpuMI CCSGG 4 cut(s) 142, 143, 548, 821
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 870
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 1 cut(s) 716
Bse21I CCTNAGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 476
BseBI CCWGG 2 cut(s) 281, 394
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 5 cut(s) 70, 436, 748, 760, 847
BseLI CCNNNNNNNGG 1 cut(s) 870
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 2 cut(s) 57, 697
BseNI ACTGG 1 cut(s) 716
BseRI GAGGAG 2 cut(s) 4, 761
BseXI GCAGC 4 cut(s) 391, 394, 397, 427
BsgI GTGCAG 2 cut(s) 63, 878
BshFI GGCC 4 cut(s) 279, 392, 863, 874
BshNI GGYRCC 2 cut(s) 283, 509
BsiHKAI GWGCWC 1 cut(s) 693
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 4 cut(s) 142, 547, 558, 820
BslFI GGGAC 2 cut(s) 286, 563
BslI CCNNNNNNNGG 1 cut(s) 870
BsmFI GGGAC 2 cut(s) 286, 563
BsnI GGCC 4 cut(s) 279, 392, 863, 874
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 3 cut(s) 313, 534, 663
BspANI GGCC 4 cut(s) 279, 392, 863, 874
BspCNI CTCAG 2 cut(s) 56, 696
BspLI GGNNCC 3 cut(s) 285, 511, 891
BspMAI CTGCAG 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 404
BspT107I GGYRCC 2 cut(s) 283, 509
BsrDI GCAATG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 1 cut(s) 716
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 313, 534, 663
Bst2UI CCWGG 2 cut(s) 281, 394
Bst6I CTCTTC 2 cut(s) 102, 761
BstC8I GCNNGC 4 cut(s) 402, 810, 852, 861
BstDEI CTNAG 3 cut(s) 43, 186, 683
BstF5I GGATG 5 cut(s) 70, 436, 748, 760, 847
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 316, 537, 666
BstMBI GATC 3 cut(s) 313, 534, 663
BstMWI GCNNNNNNNGC 9 cut(s) 86, 410, 440, 638, 647, 688, 851, 856, 860
BstNI CCWGG 2 cut(s) 281, 394
BstSCI CCNGG 6 cut(s) 140, 141, 279, 392, 546, 819
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 4 cut(s) 391, 394, 397, 427
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 43
BsuRI GGCC 4 cut(s) 279, 392, 863, 874
BtsCI GGATG 5 cut(s) 70, 436, 748, 760, 847
BtsIMutI CAGTG 1 cut(s) 691
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 4 cut(s) 402, 810, 852, 861
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 2 cut(s) 544, 890
Cfr9I CCCGGG 1 cut(s) 141
CseI GACGC 1 cut(s) 599
Csp6I GTAC 1 cut(s) 474
CviAII CATG 3 cut(s) 154, 367, 629
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 3 cut(s) 43, 186, 683
DpnI GATC 3 cut(s) 315, 536, 665
DpnII GATC 3 cut(s) 313, 534, 663
Eam1104I CTCTTC 2 cut(s) 102, 761
EarI CTCTTC 2 cut(s) 102, 761
Eco147I AGGCCT 1 cut(s) 874
Eco47I GGWCC 2 cut(s) 544, 890
Eco57I CTGAAG 2 cut(s) 141, 621
Eco81I CCTNAGG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 279, 392
FaeI CATG 3 cut(s) 157, 370, 632
FaiI YATR 8 cut(s) 155, 271, 368, 515, 517, 630, 881, 895
FalI AAGNNNNNCTT 2 cut(s) 782, 814
FaqI GGGAC 2 cut(s) 286, 563
FatI CATG 3 cut(s) 153, 366, 628
FauNDI CATATG 1 cut(s) 515
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 4 cut(s) 405, 408, 411, 441
FokI GGATG 5 cut(s) 77, 443, 755, 767, 854
Fsp4HI GCNGC 4 cut(s) 405, 408, 411, 441
FspBI CTAG 3 cut(s) 381, 401, 785
GlaI GCGC 1 cut(s) 52
GluI GCNGC 4 cut(s) 405, 408, 411, 441
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 4 cut(s) 279, 392, 863, 874
HapII CCGG 4 cut(s) 142, 547, 558, 820
HgaI GACGC 1 cut(s) 599
HhaI GCGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 157, 370, 632
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 3 cut(s) 74, 299, 596
HpaII CCGG 4 cut(s) 142, 547, 558, 820
HphI GGTGA 2 cut(s) 213, 544
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 2 cut(s) 256, 613
Hpy188III TCNNGA 3 cut(s) 356, 667, 785
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 6 cut(s) 238, 259, 319, 382, 645, 808
HpyCH4V TGCA 8 cut(s) 80, 341, 370, 443, 502, 632, 845, 859
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 410, 440, 638, 647, 688, 851, 856, 860
HpyF3I CTNAG 3 cut(s) 43, 186, 683
Hsp92II CATG 3 cut(s) 157, 370, 632
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 3 cut(s) 313, 534, 663
LmnI GCTCC 4 cut(s) 86, 160, 437, 805
Lsp1109I GCAGC 4 cut(s) 391, 394, 397, 427
LweI GCATC 8 cut(s) 22, 139, 257, 421, 617, 637, 745, 832
MaeI CTAG 3 cut(s) 381, 401, 785
MaeIII GTNAC 1 cut(s) 91
MalI GATC 3 cut(s) 315, 536, 665
MboI GATC 3 cut(s) 313, 534, 663
MboII GAAGA 7 cut(s) 89, 134, 304, 323, 682, 740, 778
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 2 cut(s) 190, 567
MlyI GAGTC 2 cut(s) 83, 308
MmeI TCCRAC 3 cut(s) 242, 720, 732
MseI TTAA 4 cut(s) 332, 426, 576, 723
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 4 cut(s) 142, 547, 558, 820
MspR9I CCNGG 6 cut(s) 142, 143, 281, 394, 548, 821
MvaI CCWGG 2 cut(s) 281, 394
MwoI GCNNNNNNNGC 9 cut(s) 86, 410, 440, 638, 647, 688, 851, 856, 860
NciI CCSGG 4 cut(s) 142, 143, 548, 821
NdeI CATATG 1 cut(s) 515
NdeII GATC 3 cut(s) 313, 534, 663
NheI GCTAGC 1 cut(s) 400
NlaIII CATG 3 cut(s) 157, 370, 632
NlaIV GGNNCC 3 cut(s) 285, 511, 891
NmeAIII GCCGAG 1 cut(s) 255
OliI CACNNNNGTG 1 cut(s) 507
PaqCI CACCTGC 1 cut(s) 232
PceI AGGCCT 1 cut(s) 874
PfeI GAWTC 1 cut(s) 596
PflFI GACNNNGTC 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 4 cut(s) 406, 409, 412, 442
PleI GAGTC 2 cut(s) 82, 307
PpsI GAGTC 2 cut(s) 82, 307
Psp6I CCWGG 2 cut(s) 279, 392
PspGI CCWGG 2 cut(s) 279, 392
PspN4I GGNNCC 3 cut(s) 285, 511, 891
PspPI GGNCC 2 cut(s) 544, 890
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 4 cut(s) 332, 426, 576, 723
SatI GCNGC 4 cut(s) 405, 408, 411, 441
Sau3AI GATC 3 cut(s) 313, 534, 663
Sau96I GGNCC 2 cut(s) 544, 890
SchI GAGTC 2 cut(s) 83, 308
ScrFI CCNGG 6 cut(s) 142, 143, 281, 394, 548, 821
SduI GDGCHC 1 cut(s) 693
SfaNI GCATC 8 cut(s) 22, 139, 257, 421, 617, 637, 745, 832
SfcI CTRYAG 1 cut(s) 441
SinI GGWCC 2 cut(s) 544, 890
SmaI CCCGGG 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 507
Sse9I AATT 2 cut(s) 190, 567
SseBI AGGCCT 1 cut(s) 874
SspMI CTAG 3 cut(s) 381, 401, 785
StuI AGGCCT 1 cut(s) 874
StyD4I CCNGG 6 cut(s) 140, 141, 279, 392, 546, 819
TaqI TCGA 3 cut(s) 8, 30, 693
TasI AATT 2 cut(s) 190, 567
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 4 cut(s) 332, 426, 576, 723
Tru9I TTAA 4 cut(s) 332, 426, 576, 723
TscAI CASTG 1 cut(s) 691
TseI GCWGC 4 cut(s) 404, 407, 410, 440
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 141
TspRI CASTG 1 cut(s) 691
Tth111I GACNNNGTC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 544, 890
XapI RAATTY 1 cut(s) 190
XbaI TCTAGA 1 cut(s) 784
XmaI CCCGGG 1 cut(s) 141
XspI CTAG 3 cut(s) 381, 401, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.