Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010664

Physical Location & Seq

Genomic Coordinates Forward (+)

15404622 .. 15407745

Gene Structure 3124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAAGATTTTCGTGAAGACTCTCAGTGGTTCGAACTTCGAGATCGAAGTAAAACCTGCAGATAAGGTTTCTGATGTTAAAACGGCTATAGAAACTGTTAAAGGTGCAGAATACCCTGCTGCTAAGCAGATGCTGATCCACCAAGGAAAGGTTCTAAAGGATGAGACCACATTGGAAGAGAACAATGTTGTTGAGAACAGTTTCATTGTTATCATGTTGTCCAAGACCAAGGCTTCTCCAAGTGGGGCATCAACCGCATCTGCACCAGCACCTAGTGCTACACAGCCACAGACAGTAGCTACACCTCAGGTTTCTGCTCCTACTGCCTCAGTTCCAGTTCCTACAAGTGGAACTGCAACCGCTGCAGCTCCAGCTACTGCTGCTTCGGTTCAGACAGATGTGTATGGTCAAGCAGCATCAAACCTTGTTGCTGGAACTACTTTAGAGTCCACTGTTCAGCAAATTCTTGATATGGGTGGAGGTAGTTGGGACCGTGACACTGTTGTTCGTGCTCTGAGAGCTGCGTTCAACAATCCTGAAAGAGCTGTTGAATACCTGTACTCGGGTATCCCTGCTCAAGCTGAAATCCCACCAGTTGCTCAAGCCCCAGCTACTGGGGAACAGGCAGCCAATCCTCTAGCACAGCCCCAACAAGCAGCAGCTCCAGCAGCTGCAACTGGTGGTCCAAACGCAAATCCATTAAACCTGTTCCCCCAGGGCATGCCCGCTGCAGATGCTGGTGCTGGAGCTGGTAATCTTGATTTCCTGCGTAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTACAAGCAAACCCACAAATTCTACAGCCTATGCTTCAGGAGCTCGGTAAACAAAACCCCCAGCTTGTGCGACTAATTCAAGAGCACCAGGCTGACTTCCTACGCTTGATAAACGAACCTGTCGAGGGAGAAGAGAATGTTATGGAACAGTTGGAAGCAGCAATGCCACAAGCTGTTACCGTTACACCTGAAGAGCGTGAAGCCATTGAACGGCTTGAAGGGATGGGGTTTGATCGTGCGATGGTCTTGGAAGTGTTCTTTGCGTGTAACAAGAATGAAGAACTTGCAGCTAATTACCTTCTAGATCACATGCATGAGTTTGAAGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050896 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

378

Amino Acids

40.07

Weight (kDa)

4.58

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 72	4.8e-07	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 75	6.8e-18	Ubiquitin family
UBA	PF00627	149 - 186	1.5e-11	UBA/TS-N domain
XPC-binding	PF09280	253 - 308	3.5e-23	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16090 AT5G38470 AT5G38470
fragaria_vesca	FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica	MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica	Prupe.3G238000_v2.0.a1
pyrus_communis	pycom09g01280 pycom17g07680
rosa_chinensis	RchiOBHm_Chr2g0162901
rosa_laevigata	RLG00000021360
rosa_rugosa	Rorug02G0499200
rosa_samantha	Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana	Rw2G046780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccB7I	CCANNNNNTGG	1 cut(s)	614
AciI	CCGC	3 cut(s)	255, 360, 726
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	462, 822
AcuI	CTGAAG	2 cut(s)	824, 1014
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	560, 807
AfiI	CCNNNNNNNGG	6 cut(s)	148, 347, 562, 614, 929, 1014
AgsI	TTSAA	6 cut(s)	529, 551, 884, 1013, 1022, 1127
AjnI	CCWGG	2 cut(s)	714, 891
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
Alw21I	GWGCWC	3 cut(s)	514, 849, 891
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	130
AlwNI	CAGNNNCTG	5 cut(s)	133, 377, 614, 671, 737
Ama87I	CYCGRG	1 cut(s)	562
ApoI	RAATTY	2 cut(s)	462, 822
Asp700I	GAANNNNTTC	2 cut(s)	8, 200
AspS9I	GGNCC	2 cut(s)	490, 683
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	490, 683
AxyI	CCTNAGG	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	550, 583
BanII	GRGCYC	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	3 cut(s)	514, 849, 891
BccI	CCATC	2 cut(s)	1021, 1039
BceAI	ACGGC	2 cut(s)	99, 1031
BciT130I	CCWGG	2 cut(s)	716, 893
BciVI	GTATCC	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	3 cut(s)	273, 638, 1106
BfmI	CTRYAG	5 cut(s)	57, 87, 363, 729, 827
BfuAI	ACCTGC	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	578
BlpI	GCTNAGC	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	716, 893
Bme18I	GGWCC	2 cut(s)	490, 683
BmeT110I	CYCGRG	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	490, 683
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	2 cut(s)	716, 893
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	5 cut(s)	120, 257, 266, 425, 724
BmuI	ACTGGG	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	3 cut(s)	354, 648, 765
Bpu1102I	GCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	561, 585
BsaBI	GATNNNNATC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	4 cut(s)	142, 228, 714, 715
Bsc4I	CCNNNNNNNGG	6 cut(s)	148, 347, 562, 614, 929, 1014
Bse1I	ACTGG	4 cut(s)	335, 593, 619, 682
Bse21I	CCTNAGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	972
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	716, 893
BseDI	CCNNGG	4 cut(s)	142, 228, 714, 715
BseGI	GGATG	2 cut(s)	166, 1032
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	6 cut(s)	148, 347, 562, 614, 929, 1014
BseMI	GCAATG	1 cut(s)	972
BseMII	CTCAG	4 cut(s)	37, 320, 342, 506
BseNI	ACTGG	4 cut(s)	335, 593, 619, 682
BseYI	CCCAGC	2 cut(s)	607, 864
BsgI	GTGCAG	2 cut(s)	126, 246
BsiHKAI	GWGCWC	3 cut(s)	514, 849, 891
BsiHKCI	CYCGRG	1 cut(s)	562
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	6 cut(s)	148, 347, 562, 614, 929, 1014
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	503
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	562
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	3 cut(s)	514, 849, 891
Bsp143I	GATC	5 cut(s)	42, 135, 1036, 1108, 1129
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	3 cut(s)	255, 360, 726
BspCNI	CTCAG	4 cut(s)	36, 319, 341, 507
BspLI	GGNNCC	1 cut(s)	491
BspMAI	CTGCAG	3 cut(s)	61, 367, 733
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	130
BspQI	GCTCTTC	1 cut(s)	990
BspT104I	TTCGAA	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	972
BsrI	ACTGG	4 cut(s)	335, 593, 619, 682
BssECI	CCNNGG	4 cut(s)	142, 228, 714, 715
BssMI	GATC	5 cut(s)	42, 135, 1036, 1108, 1129
BssT1I	CCWWGG	2 cut(s)	142, 228
Bst2UI	CCWGG	2 cut(s)	716, 893
Bst6I	CTCTTC	3 cut(s)	171, 930, 990
BstAPI	GCANNNNNTGC	2 cut(s)	275, 362
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	722, 726, 798
BstDEI	CTNAG	5 cut(s)	23, 123, 306, 328, 515
BstF5I	GGATG	2 cut(s)	166, 1032
BstKTI	GATC	5 cut(s)	45, 138, 1039, 1111, 1132
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	5 cut(s)	42, 135, 1036, 1108, 1129
BstNI	CCWGG	2 cut(s)	716, 893
BstNSI	RCATGY	2 cut(s)	724, 1117
BstSCI	CCNGG	2 cut(s)	714, 891
BstSFI	CTRYAG	5 cut(s)	57, 87, 363, 729, 827
BstV2I	GAAGAC	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	1058
BtsCI	GGATG	2 cut(s)	166, 1032
BtsIMutI	CAGTG	3 cut(s)	31, 450, 498
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	722, 726, 798
CaiI	CAGNNNCTG	5 cut(s)	133, 377, 614, 671, 737
Cfr13I	GGNCC	2 cut(s)	490, 683
Csp6I	GTAC	2 cut(s)	559, 806
CviAII	CATG	4 cut(s)	214, 721, 1114, 1118
CviQI	GTAC	2 cut(s)	559, 806
DdeI	CTNAG	5 cut(s)	23, 123, 306, 328, 515
DpnI	GATC	5 cut(s)	44, 137, 1038, 1110, 1131
DpnII	GATC	5 cut(s)	42, 135, 1036, 1108, 1129
DraIII	CACNNNGTG	1 cut(s)	275
Eam1104I	CTCTTC	3 cut(s)	171, 930, 990
EarI	CTCTTC	3 cut(s)	171, 930, 990
Ecl136II	GAGCTC	1 cut(s)	847
Eco130I	CCWWGG	2 cut(s)	142, 228
Eco24I	GRGCYC	1 cut(s)	849
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	490, 683
Eco53kI	GAGCTC	1 cut(s)	847
Eco57I	CTGAAG	2 cut(s)	824, 1014
Eco81I	CCTNAGG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	714, 891
EcoT14I	CCWWGG	2 cut(s)	142, 228
EcoT22I	ATGCAT	1 cut(s)	1119
EcoT38I	GRGCYC	1 cut(s)	849
ErhI	CCWWGG	2 cut(s)	142, 228
FaeI	CATG	4 cut(s)	217, 724, 1117, 1121
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	4 cut(s)	213, 720, 1113, 1117
FauI	CCCGC	1 cut(s)	733
FokI	GGATG	2 cut(s)	173, 1039
FriOI	GRGCYC	1 cut(s)	849
FspBI	CTAG	3 cut(s)	273, 638, 1106
GsaI	CCCAGC	2 cut(s)	611, 868
GsuI	CTGGAG	3 cut(s)	354, 648, 765
Hin1II	CATG	4 cut(s)	217, 724, 1117, 1121
HincII	GTYRAC	1 cut(s)	779
HindII	GTYRAC	1 cut(s)	779
HinfI	GANTC	2 cut(s)	19, 446
Hpy166II	GTNNAC	3 cut(s)	450, 779, 854
Hpy188I	TCNGA	3 cut(s)	73, 393, 516
Hpy188III	TCNNGA	8 cut(s)	13, 40, 467, 536, 758, 842, 884, 1106
Hpy8I	GTNNAC	3 cut(s)	450, 779, 854
HpyAV	CCTTC	2 cut(s)	1016, 1112
HpyCH4V	TGCA	9 cut(s)	59, 107, 263, 356, 365, 674, 731, 1091, 1117
HpyF3I	CTNAG	5 cut(s)	23, 123, 306, 328, 515
Hsp92II	CATG	4 cut(s)	217, 724, 1117, 1121
Kzo9I	GATC	5 cut(s)	42, 135, 1036, 1108, 1129
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	5 cut(s)	322, 373, 667, 746, 844
LweI	GCATC	5 cut(s)	120, 257, 266, 425, 724
MaeI	CTAG	3 cut(s)	273, 638, 1106
MaeIII	GTNAC	5 cut(s)	494, 770, 979, 985, 1070
MalI	GATC	5 cut(s)	44, 137, 1038, 1110, 1131
MboI	GATC	5 cut(s)	42, 135, 1036, 1108, 1129
MboII	GAAGA	6 cut(s)	16, 28, 188, 947, 1007, 1094
MhlI	GDGCHC	3 cut(s)	514, 849, 891
MluCI	AATT	4 cut(s)	462, 822, 879, 1096
MlyI	GAGTC	2 cut(s)	13, 455
MmeI	TCCRAC	1 cut(s)	936
MnlI	CCTC	5 cut(s)	315, 337, 473, 645, 922
Mph1103I	ATGCAT	1 cut(s)	1119
MroXI	GAANNNNTTC	2 cut(s)	8, 200
MseI	TTAA	3 cut(s)	78, 99, 701
MslI	CAYNNNNRTG	1 cut(s)	1116
MspA1I	CMGCKG	3 cut(s)	362, 671, 728
MspR9I	CCNGG	2 cut(s)	716, 893
MvaI	CCWGG	2 cut(s)	716, 893
NdeII	GATC	5 cut(s)	42, 135, 1036, 1108, 1129
NlaIII	CATG	4 cut(s)	217, 724, 1117, 1121
NlaIV	GGNNCC	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	494
NsiI	ATGCAT	1 cut(s)	1119
NspI	RCATGY	2 cut(s)	724, 1117
NspV	TTCGAA	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	724
PasI	CCCWGGG	1 cut(s)	715
PciSI	GCTCTTC	1 cut(s)	990
PcsI	WCGNNNNNNNCGW	1 cut(s)	924
PdmI	GAANNNNTTC	2 cut(s)	8, 200
PflMI	CCANNNNNTGG	1 cut(s)	614
PleI	GAGTC	2 cut(s)	13, 454
PpsI	GAGTC	2 cut(s)	13, 454
Psp124BI	GAGCTC	1 cut(s)	849
Psp6I	CCWGG	2 cut(s)	714, 891
PspFI	CCCAGC	2 cut(s)	607, 864
PspGI	CCWGG	2 cut(s)	714, 891
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	2 cut(s)	490, 683
PstI	CTGCAG	3 cut(s)	61, 367, 733
PstNI	CAGNNNCTG	5 cut(s)	133, 377, 614, 671, 737
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	2 cut(s)	560, 807
RsaNI	GTAC	2 cut(s)	559, 806
RseI	CAYNNNNRTG	1 cut(s)	1116
SacI	GAGCTC	1 cut(s)	849
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	3 cut(s)	78, 99, 701
Sau3AI	GATC	5 cut(s)	42, 135, 1036, 1108, 1129
Sau96I	GGNCC	2 cut(s)	490, 683
SchI	GAGTC	2 cut(s)	13, 455
ScrFI	CCNGG	2 cut(s)	716, 893
SduI	GDGCHC	3 cut(s)	514, 849, 891
SfaNI	GCATC	5 cut(s)	120, 257, 266, 425, 724
SfcI	CTRYAG	5 cut(s)	57, 87, 363, 729, 827
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	2 cut(s)	490, 683
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SmlI	CTYRAG	2 cut(s)	576, 600
SmoI	CTYRAG	2 cut(s)	576, 600
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	4 cut(s)	462, 822, 879, 1096
SsiI	CCGC	3 cut(s)	255, 360, 726
SspMI	CTAG	3 cut(s)	273, 638, 1106
SstI	GAGCTC	1 cut(s)	849
StyD4I	CCNGG	2 cut(s)	714, 891
StyI	CCWWGG	2 cut(s)	142, 228
TaqI	TCGA	4 cut(s)	32, 39, 45, 927
TasI	AATT	4 cut(s)	462, 822, 879, 1096
TatI	WGTACW	1 cut(s)	558
Tru1I	TTAA	3 cut(s)	78, 99, 701
Tru9I	TTAA	3 cut(s)	78, 99, 701
TscAI	CASTG	3 cut(s)	31, 457, 505
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	3 cut(s)	17, 193, 1095
TspRI	CASTG	3 cut(s)	31, 457, 505
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	2 cut(s)	490, 683
XapI	RAATTY	2 cut(s)	462, 822
XbaI	TCTAGA	1 cut(s)	1105
XceI	RCATGY	2 cut(s)	724, 1117
XmnI	GAANNNNTTC	2 cut(s)	8, 200
XspI	CTAG	3 cut(s)	273, 638, 1106
Zsp2I	ATGCAT	1 cut(s)	1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.