Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010664

Physical Location & Seq

Genomic Coordinates Forward (+)

23303715 .. 23308811

Gene Structure 5097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G238000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAAGGTTTTTGTCAAGACTTTGAAGGGCACTAACTTCGAGATCGAAGTGAAACCCGAAGAGATGGTTGCTGATGTCAAGAAAATTATTGAGACCGTACAGGGTGCAGATGTGTACCCTGCCTCACAACAGATGCTTATTCATCAGGGGAAAGTTCTTAAGGACACCACAACTCTAGAAGAAAATCAAGTTGCTGAAAATAGTTTTATTGTGATAATGTTAACCAAGAATAAGGCATCACCAAGCGGAGCCTCCAGTACAAAAGGTGCAGCCACAAGTCAGGCTCAACCTGCTAGTACTCCTACCTCGACAGCCCCACCAGTAGCATCTCCAGCTCCTGTGCGAGCTGTGGCAGAGTCACAGCCTGTCGTTGAGACTCCTGCTGTTGCAGCTCCCACTGATTCTTCAAGATCAGATGTGTATGGCCAAGCTGCATCAAATCTTGTTGCAGGAACTAATTTAGAGGCTACCGTTCAGCAGATTCTAGATATGGGTGGAGGAAGTTGGGATCGTGATACAGTTGTCCGTGCTTTACGTGCTGCCTTCAACAACCCTGAAAGGGCTGTTGAGTATTTATATTCTGGCATTCCTGAACAAGCTGAAGTCCCACCAGCAGCCCAAGTTCCTGCTGGTGAACAAGCAGCAAATCCTCCGGCAGCAAATCCTCCAGCCCAGGCTCCACAACCAGTAGCGCCTACTGGCGGTCCGAATGCAAATCCACTAGACCTGTTTCCACAGGGCCTTCCCAATATGGGTGCAAATGCTGGTGCAGGCAATTTGGATTTCCTGCGCAACAGTCCACAGTTCCAAGCTTTGCGAGCTATGGTGCAAGCAAACCCTCAAATTCTCCAGCCTATGCTTCAAGAGTTAGGGAAACAAAATCCACATCTAATGCAGCTCATTCAAGCACATCAAGCTGACTTCTTACGCTTGATAAATGAGCCTGTTGAAGGCGGTGAAGGGAACCTATTGGAGCAGTTGGGTGCAGCAGTGCCACAGGCTGTGACCGTCACCCCTGAGGAGCGAGAGGCCATCGAACGTCTTGAAGCTATGGGTTTTGATCGGGCCCTTGTGTTGGAGGTATACTTTGCATGCAACAAGAATGAGGAGCTGGCGGCCAACTATCTTTTGGATCACATGCATGAGTTTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050896 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

386

Amino Acids

40.96

Weight (kDa)

4.66

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16090 AT5G38470 AT5G38470
fragaria_vesca	FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica	MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica	Prupe.3G238000_v2.0.a1
pyrus_communis	pycom09g01280 pycom17g07680
rosa_chinensis	RchiOBHm_Chr2g0162901
rosa_laevigata	RLG00000021360
rosa_rugosa	Rorug02G0499200
rosa_samantha	Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana	Rw2G046780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	1083
AciI	CCGC	4 cut(s)	246, 702, 954, 1115
AclWI	GGATC	2 cut(s)	516, 1140
AcoI	YGGCCR	2 cut(s)	424, 1116
AcsI	RAATTY	1 cut(s)	843
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	4 cut(s)	99, 116, 259, 298
AfiI	CCNNNNNNNGG	5 cut(s)	559, 701, 752, 950, 1075
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	7 cut(s)	25, 408, 547, 863, 905, 950, 1046
AjnI	CCWGG	1 cut(s)	672
Alw26I	GTCTC	2 cut(s)	86, 368
AlwI	GGATC	2 cut(s)	516, 1140
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	5 cut(s)	424, 739, 1029, 1065, 1116
ApaI	GGGCCC	1 cut(s)	1069
ApeKI	GCWGC	9 cut(s)	269, 389, 431, 539, 614, 641, 656, 895, 986
ApoI	RAATTY	1 cut(s)	843
AspLEI	GCGC	2 cut(s)	694, 792
AspS9I	GGNCC	4 cut(s)	704, 739, 1065, 1066
AsuHPI	GGTGA	4 cut(s)	231, 644, 968, 1003
AvaII	GGWCC	1 cut(s)	704
AxyI	CCTNAGG	1 cut(s)	1017
BaeGI	GKGCMC	2 cut(s)	32, 1069
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BalI	TGGCCA	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	1069
BbvI	GCAGC	9 cut(s)	281, 401, 418, 526, 626, 653, 668, 907, 998
BccI	CCATC	2 cut(s)	58, 1040
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	1 cut(s)	674
BcoDI	GTCTC	2 cut(s)	86, 368
BfaI	CTAG	4 cut(s)	176, 294, 485, 722
BfoI	RGCGCY	1 cut(s)	695
BfrI	CTTAAG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	298
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	674
Bme18I	GGWCC	1 cut(s)	704
BmgT120I	GGNCC	4 cut(s)	704, 739, 1065, 1066
BmiI	GGNNCC	4 cut(s)	250, 678, 965, 1067
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	4 cut(s)	123, 245, 335, 443
BpmI	CTGGAG	4 cut(s)	238, 315, 651, 833
BsaAI	YACGTR	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	5 cut(s)	559, 701, 752, 950, 1075
Bse1I	ACTGG	4 cut(s)	255, 320, 686, 703
Bse21I	CCTNAGG	1 cut(s)	1017
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	1 cut(s)	672
BseLI	CCNNNNNNNGG	5 cut(s)	559, 701, 752, 950, 1075
BseMII	CTCAG	1 cut(s)	1008
BseNI	ACTGG	4 cut(s)	255, 320, 686, 703
BseRI	GAGGAG	2 cut(s)	1034, 1121
BseSI	GKGCMC	2 cut(s)	32, 1069
BseXI	GCAGC	9 cut(s)	281, 401, 418, 526, 626, 653, 668, 907, 998
BsgI	GTGCAG	4 cut(s)	126, 288, 789, 1005
BshFI	GGCC	5 cut(s)	426, 741, 1031, 1067, 1118
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	5 cut(s)	559, 701, 752, 950, 1075
BsmAI	GTCTC	2 cut(s)	86, 368
BsmFI	GGGAC	1 cut(s)	590
BsmI	GAATGC	2 cut(s)	585, 715
BsnI	GGCC	5 cut(s)	426, 741, 1031, 1067, 1118
Bso31I	GGTCTC	1 cut(s)	86
Bsp120I	GGGCCC	1 cut(s)	1065
Bsp1286I	GDGCHC	2 cut(s)	32, 1069
Bsp143I	GATC	5 cut(s)	42, 410, 508, 1060, 1132
BspACI	CCGC	4 cut(s)	246, 702, 954, 1115
BspANI	GGCC	5 cut(s)	426, 741, 1031, 1067, 1118
BspCNI	CTCAG	1 cut(s)	1009
BspLI	GGNNCC	4 cut(s)	250, 678, 965, 1067
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	2 cut(s)	516, 1140
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	4 cut(s)	255, 320, 686, 703
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	5 cut(s)	42, 410, 508, 1060, 1132
BssNAI	GTATAC	1 cut(s)	1084
Bst1107I	GTATAC	1 cut(s)	1084
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	6 cut(s)	97, 472, 520, 797, 804, 1009
Bst6I	CTCTTC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	536
BstC8I	GCNNGC	6 cut(s)	345, 772, 819, 831, 1093, 1113
BstDEI	CTNAG	1 cut(s)	1017
BstENI	CCTNNNNNAGG	1 cut(s)	948
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	2 cut(s)	694, 792
BstKTI	GATC	5 cut(s)	45, 413, 511, 1063, 1135
BstMAI	GTCTC	2 cut(s)	86, 368
BstMBI	GATC	5 cut(s)	42, 410, 508, 1060, 1132
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 332, 389, 536, 818, 914
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	2 cut(s)	1095, 1141
BstSCI	CCNGG	1 cut(s)	672
BstSLI	GKGCMC	2 cut(s)	32, 1069
BstV1I	GCAGC	9 cut(s)	281, 401, 418, 526, 626, 653, 668, 907, 998
BstZ17I	GTATAC	1 cut(s)	1084
Bsu36I	CCTNAGG	1 cut(s)	1017
BsuRI	GGCC	5 cut(s)	426, 741, 1031, 1067, 1118
BtsI	GCAGTG	1 cut(s)	996
BtsIMutI	CAGTG	2 cut(s)	396, 996
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	6 cut(s)	345, 772, 819, 831, 1093, 1113
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	2 cut(s)	694, 792
Cfr13I	GGNCC	4 cut(s)	704, 739, 1065, 1066
CpoI	CGGWCCG	1 cut(s)	704
Csp6I	GTAC	4 cut(s)	98, 115, 258, 297
CspI	CGGWCCG	1 cut(s)	704
CviAII	CATG	3 cut(s)	1092, 1138, 1142
CviQI	GTAC	4 cut(s)	98, 115, 258, 297
DdeI	CTNAG	1 cut(s)	1017
DpnI	GATC	5 cut(s)	44, 412, 510, 1062, 1134
DpnII	GATC	5 cut(s)	42, 410, 508, 1060, 1132
EaeI	YGGCCR	2 cut(s)	424, 1116
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	1069
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	621
Eco81I	CCTNAGG	1 cut(s)	1017
EcoNI	CCTNNNNNAGG	1 cut(s)	948
EcoO109I	RGGNCCY	2 cut(s)	739, 1066
EcoRII	CCWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	1143
EcoT38I	GRGCYC	1 cut(s)	1069
FaeI	CATG	3 cut(s)	1095, 1141, 1145
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	3 cut(s)	1091, 1137, 1141
FblI	GTMKAC	1 cut(s)	1083
FriOI	GRGCYC	1 cut(s)	1069
FspBI	CTAG	4 cut(s)	176, 294, 485, 722
FspI	TGCGCA	1 cut(s)	791
GlaI	GCGC	2 cut(s)	693, 791
GsuI	CTGGAG	4 cut(s)	238, 315, 651, 833
HaeII	RGCGCY	1 cut(s)	695
HaeIII	GGCC	5 cut(s)	426, 741, 1031, 1067, 1118
HapII	CCGG	1 cut(s)	653
HhaI	GCGC	2 cut(s)	694, 792
Hin1II	CATG	3 cut(s)	1095, 1141, 1145
Hin6I	GCGC	2 cut(s)	692, 790
HinP1I	GCGC	2 cut(s)	692, 790
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	810
HinfI	GANTC	4 cut(s)	356, 376, 401, 481
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	4 cut(s)	231, 644, 968, 1003
Hpy166II	GTNNAC	5 cut(s)	115, 222, 635, 800, 1084
Hpy188I	TCNGA	2 cut(s)	415, 708
Hpy8I	GTNNAC	5 cut(s)	115, 222, 635, 800, 1084
HpyAV	CCTTC	5 cut(s)	19, 553, 752, 944, 953
HpyCH4III	ACNGT	6 cut(s)	97, 472, 520, 797, 804, 1009
HpyCH4IV	ACGT	2 cut(s)	535, 1039
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 332, 389, 536, 818, 914
HpyF3I	CTNAG	1 cut(s)	1017
HpySE526I	ACGT	2 cut(s)	535, 1039
Hsp92II	CATG	3 cut(s)	1095, 1141, 1145
HspAI	GCGC	2 cut(s)	692, 790
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	42, 410, 508, 1060, 1132
LmnI	GCTCC	7 cut(s)	248, 340, 397, 682, 973, 1021, 1108
Lsp1109I	GCAGC	9 cut(s)	281, 401, 418, 526, 626, 653, 668, 907, 998
LweI	GCATC	4 cut(s)	123, 245, 335, 443
MaeI	CTAG	4 cut(s)	176, 294, 485, 722
MaeII	ACGT	2 cut(s)	535, 1039
MaeIII	GTNAC	3 cut(s)	357, 1003, 1009
MalI	GATC	5 cut(s)	44, 412, 510, 1062, 1134
MboI	GATC	5 cut(s)	42, 410, 508, 1060, 1132
MboII	GAAGA	3 cut(s)	71, 191, 396
MhlI	GDGCHC	2 cut(s)	32, 1069
MlsI	TGGCCA	1 cut(s)	426
MluCI	AATT	4 cut(s)	84, 457, 775, 843
MluNI	TGGCCA	1 cut(s)	426
MlyI	GAGTC	2 cut(s)	365, 370
MmeI	TCCRAC	1 cut(s)	1056
Mox20I	TGGCCA	1 cut(s)	426
Mph1103I	ATGCAT	1 cut(s)	1143
MscI	TGGCCA	1 cut(s)	426
MseI	TTAA	2 cut(s)	159, 221
MslI	CAYNNNNRTG	1 cut(s)	1140
Msp20I	TGGCCA	1 cut(s)	426
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	653
MspR9I	CCNGG	1 cut(s)	674
Mva1269I	GAATGC	2 cut(s)	585, 715
MvaI	CCWGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	6 cut(s)	290, 332, 389, 536, 818, 914
NdeII	GATC	5 cut(s)	42, 410, 508, 1060, 1132
NlaIII	CATG	3 cut(s)	1095, 1141, 1145
NlaIV	GGNNCC	4 cut(s)	250, 678, 965, 1067
NmuCI	GTSAC	3 cut(s)	357, 1003, 1009
NsbI	TGCGCA	1 cut(s)	791
NsiI	ATGCAT	1 cut(s)	1143
NspI	RCATGY	2 cut(s)	1095, 1141
PaeI	GCATGC	1 cut(s)	1095
PctI	GAATGC	2 cut(s)	585, 715
PfeI	GAWTC	2 cut(s)	401, 481
PleI	GAGTC	2 cut(s)	364, 370
PpsI	GAGTC	2 cut(s)	364, 370
Ppu21I	YACGTR	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	672
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	4 cut(s)	250, 678, 965, 1067
PspOMI	GGGCCC	1 cut(s)	1065
PspPI	GGNCC	4 cut(s)	704, 739, 1065, 1066
PstNI	CAGNNNCTG	1 cut(s)	338
RsaI	GTAC	4 cut(s)	99, 116, 259, 298
RsaNI	GTAC	4 cut(s)	98, 115, 258, 297
RseI	CAYNNNNRTG	1 cut(s)	1140
Rsr2I	CGGWCCG	1 cut(s)	704
RsrII	CGGWCCG	1 cut(s)	704
SaqAI	TTAA	2 cut(s)	159, 221
Sau3AI	GATC	5 cut(s)	42, 410, 508, 1060, 1132
Sau96I	GGNCC	4 cut(s)	704, 739, 1065, 1066
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	2 cut(s)	365, 370
ScrFI	CCNGG	1 cut(s)	674
SduI	GDGCHC	2 cut(s)	32, 1069
SfaNI	GCATC	4 cut(s)	123, 245, 335, 443
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	1140
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SphI	GCATGC	1 cut(s)	1095
Sse9I	AATT	4 cut(s)	84, 457, 775, 843
SsiI	CCGC	4 cut(s)	246, 702, 954, 1115
SspMI	CTAG	4 cut(s)	176, 294, 485, 722
StyD4I	CCNGG	1 cut(s)	672
TaaI	ACNGT	6 cut(s)	97, 472, 520, 797, 804, 1009
TaiI	ACGT	2 cut(s)	538, 1042
TaqI	TCGA	4 cut(s)	39, 45, 308, 1035
TasI	AATT	4 cut(s)	84, 457, 775, 843
TatI	WGTACW	2 cut(s)	257, 296
TauI	GCSGC	1 cut(s)	1118
TfiI	GAWTC	2 cut(s)	401, 481
Tru1I	TTAA	2 cut(s)	159, 221
Tru9I	TTAA	2 cut(s)	159, 221
TscAI	CASTG	2 cut(s)	403, 996
TseFI	GTSAC	3 cut(s)	357, 1003, 1009
TseI	GCWGC	9 cut(s)	269, 389, 431, 539, 614, 641, 656, 895, 986
Tsp45I	GTSAC	3 cut(s)	357, 1003, 1009
TspDTI	ATGAA	2 cut(s)	17, 131
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	2 cut(s)	403, 996
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	704
XagI	CCTNNNNNAGG	1 cut(s)	948
XapI	RAATTY	1 cut(s)	843
XbaI	TCTAGA	2 cut(s)	175, 484
XceI	RCATGY	2 cut(s)	1095, 1141
XcmI	CCANNNNNNNNNTGG	2 cut(s)	626, 1126
XmiI	GTMKAC	1 cut(s)	1083
XspI	CTAG	4 cut(s)	176, 294, 485, 722
ZrmI	AGTACT	1 cut(s)	298
Zsp2I	ATGCAT	1 cut(s)	1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.