RLG00000021360

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010664
Physical Location & Seq
Reverse (-)
74506488 .. 74510777
4290 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021360

Sequence Viewer

Length: 738 bp
ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACCAACTTCGAGATCGAAGTGGAGCCTCAGCAGTTGGTTGCGGATGTGAAGCAAGTTATAGAGACGGCACAGGGTGCAGATGTGTACCCTGCCTCAAAACAGATGCTTATTCACCAGGGGAAAGTTCTTAAGGACGCCACGACTCTAGAAGAAAATCAAGTTGCTGAAAACAGCTTTATTGTGATAATGTTGAGCAAGGCTTCACCTAGTGGAAGCTCCAGTACGCAAGGTGCCCCCAAAAGTCAGGCTCAACCTGCTAGTACTCCTAGCACGACGACAACACCACCAGCAGCTCCAGCTCCGGCTGCGGCTCCAGCTCCTGCACCTGCCTCAGTTGTGGCACATTCAGTTACTGATGTGTATGGGCAAGCTGCATCAAATCTTGTTGCAGGAAATAATTTAGAAGTTATCGTTCAACAGATTCTAGATATGGGTGGAGGAAGTTGGGATAGGGATACCGTTCTTCGTGCTTTACGTGCTGCATTTAACAATCCTGAAAGGGCTGTTGAATATCTTTATTCCGGAATTCCCGAACAAGCTGAAGTACCTCCAGCTGCCCAAGTTCCTGTTGGTGAACAGGCAGTAAATCCTCCAGCAATAAATCCTCCCGCCCAGGCTCCACAAGCAGCAGCGCCTACTGGTGGTCCAAATGCAAACCCGCTGGATCTGTTTCCACAGGTATTTATTGTCCAATTTTGTAGTCTATGA

Protein Analysis

246

Amino Acids

25.42

Weight (kDa)

4.71

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 1.3e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 1.8e-17 Ubiquitin family
UBA PF00627 146 - 182 1e-10 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 2 cut(s) 292, 364
AccB1I GGYRCC 2 cut(s) 29, 260
AccIII TCCGGA 1 cut(s) 551
AciI CCGC 4 cut(s) 71, 338, 639, 689
AclWI GGATC 1 cut(s) 702
AcsI RAATTY 1 cut(s) 555
AcuI CTGAAG 1 cut(s) 591
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 2 cut(s) 104, 239
AfaI GTAC 4 cut(s) 116, 253, 292, 576
AfiI CCNNNNNNNGG 1 cut(s) 671
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 25, 446, 539
AjnI CCWGG 2 cut(s) 144, 642
AluBI AGCT 8 cut(s) 204, 246, 323, 329, 347, 401, 569, 584
AluI AGCT 8 cut(s) 204, 246, 323, 329, 347, 401, 569, 584
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 702
AlwNI CAGNNNCTG 2 cut(s) 350, 383
Aor13HI TCCGGA 1 cut(s) 551
ApeKI GCWGC 7 cut(s) 320, 335, 401, 509, 584, 656, 659
ApoI RAATTY 1 cut(s) 555
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 1 cut(s) 674
AsuHPI GGTGA 3 cut(s) 134, 225, 614
AvaII GGWCC 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 265
BanI GGYRCC 2 cut(s) 29, 260
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 7 cut(s) 322, 332, 388, 496, 571, 668, 671
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 146, 644
BciVI GTATCC 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 5 cut(s) 176, 237, 288, 297, 455
BfoI RGCGCY 1 cut(s) 665
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 2 cut(s) 292, 364
BfuI GTATCC 1 cut(s) 478
BisI GCNGC 8 cut(s) 321, 336, 339, 402, 510, 585, 657, 660
BlsI GCNGC 8 cut(s) 322, 337, 340, 403, 511, 586, 658, 661
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 146, 644
Bme18I GGWCC 1 cut(s) 674
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 5 cut(s) 31, 54, 262, 342, 648
BmrFI CCNGG 2 cut(s) 146, 644
BmsI GCATC 2 cut(s) 123, 413
BpmI CTGGAG 5 cut(s) 232, 309, 327, 564, 606
Bpu10I CCTNAGC 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 145, 642
BsaWI WCCGGW 1 cut(s) 551
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse1I ACTGG 2 cut(s) 249, 673
BseAI TCCGGA 1 cut(s) 551
BseBI CCWGG 2 cut(s) 146, 644
BseDI CCNNGG 2 cut(s) 145, 642
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMII CTCAG 2 cut(s) 71, 375
BseNI ACTGG 2 cut(s) 249, 673
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 7 cut(s) 322, 332, 388, 496, 571, 668, 671
BsgI GTGCAG 2 cut(s) 126, 336
BshNI GGYRCC 2 cut(s) 29, 260
BsiSI CCGG 2 cut(s) 332, 552
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 265
Bsp13I TCCGGA 1 cut(s) 551
Bsp143I GATC 2 cut(s) 42, 694
BspACI CCGC 4 cut(s) 71, 338, 639, 689
BspCNI CTCAG 2 cut(s) 70, 374
BspEI TCCGGA 1 cut(s) 551
BspLI GGNNCC 5 cut(s) 31, 54, 262, 342, 648
BspMI ACCTGC 2 cut(s) 292, 364
BspPI GGATC 1 cut(s) 702
BspT107I GGYRCC 2 cut(s) 29, 260
BspTI CTTAAG 1 cut(s) 158
BsrI ACTGG 2 cut(s) 249, 673
BssECI CCNNGG 2 cut(s) 145, 642
BssMI GATC 2 cut(s) 42, 694
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 146, 644
Bst4CI ACNGT 1 cut(s) 490
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 104
BstBAI YACGTR 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 57, 361
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 2 cut(s) 45, 697
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 42, 694
BstMWI GCNNNNNNNGC 7 cut(s) 104, 284, 326, 335, 344, 506, 653
BstNI CCWGG 2 cut(s) 146, 644
BstSCI CCNGG 2 cut(s) 144, 642
BstSLI GKGCMC 1 cut(s) 265
BstV1I GCAGC 7 cut(s) 322, 332, 388, 496, 571, 668, 671
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BsuI GTATCC 1 cut(s) 478
BtsCI GGATG 1 cut(s) 79
BveI ACCTGC 2 cut(s) 292, 364
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 2 cut(s) 350, 383
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 1 cut(s) 674
CseI GACGC 1 cut(s) 173
Csp6I GTAC 4 cut(s) 115, 252, 291, 575
CviQI GTAC 4 cut(s) 115, 252, 291, 575
DdeI CTNAG 2 cut(s) 57, 361
DpnI GATC 2 cut(s) 44, 696
DpnII GATC 2 cut(s) 42, 694
DraIII CACNNNGTG 2 cut(s) 104, 239
Eco47I GGWCC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 591
EcoRI GAATTC 1 cut(s) 555
EcoRII CCWGG 2 cut(s) 144, 642
Esp3I CGTCTC 1 cut(s) 86
FaiI YATR 4 cut(s) 89, 393, 461, 736
FauI CCCGC 2 cut(s) 646, 696
Fnu4HI GCNGC 8 cut(s) 321, 336, 339, 402, 510, 585, 657, 660
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 8 cut(s) 321, 336, 339, 402, 510, 585, 657, 660
FspBI CTAG 5 cut(s) 176, 237, 288, 297, 455
GlaI GCGC 1 cut(s) 663
GluI GCNGC 8 cut(s) 321, 336, 339, 402, 510, 585, 657, 660
GsuI CTGGAG 5 cut(s) 232, 309, 327, 564, 606
HaeII RGCGCY 1 cut(s) 665
HapII CCGG 2 cut(s) 332, 552
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 664
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HinfI GANTC 2 cut(s) 172, 451
HpaII CCGG 2 cut(s) 332, 552
HphI GGTGA 3 cut(s) 134, 225, 614
Hpy166II GTNNAC 2 cut(s) 115, 605
Hpy188III TCNNGA 7 cut(s) 16, 40, 176, 455, 524, 552, 560
Hpy8I GTNNAC 2 cut(s) 115, 605
Hpy99I CGWCG 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 6 cut(s) 107, 353, 404, 419, 512, 683
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 284, 326, 335, 344, 506, 653
HpyF3I CTNAG 2 cut(s) 57, 361
HpySE526I ACGT 1 cut(s) 505
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 1 cut(s) 662
Kpn2I TCCGGA 1 cut(s) 551
Kzo9I GATC 2 cut(s) 42, 694
LmnI GCTCC 7 cut(s) 52, 251, 328, 334, 346, 352, 652
Lsp1109I GCAGC 7 cut(s) 322, 332, 388, 496, 571, 668, 671
LweI GCATC 2 cut(s) 123, 413
MaeI CTAG 5 cut(s) 176, 237, 288, 297, 455
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 1 cut(s) 379
MalI GATC 2 cut(s) 44, 696
MboI GATC 2 cut(s) 42, 694
MboII GAAGA 2 cut(s) 191, 485
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 3 cut(s) 427, 555, 722
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 7 cut(s) 66, 133, 370, 461, 588, 630, 645
MroI TCCGGA 1 cut(s) 551
MseI TTAA 2 cut(s) 159, 516
MspA1I CMGCKG 2 cut(s) 584, 691
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 332, 552
MspR9I CCNGG 2 cut(s) 146, 644
MvaI CCWGG 2 cut(s) 146, 644
MwoI GCNNNNNNNGC 7 cut(s) 104, 284, 326, 335, 344, 506, 653
NdeII GATC 2 cut(s) 42, 694
NlaIV GGNNCC 5 cut(s) 31, 54, 262, 342, 648
PaqCI CACCTGC 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PfeI GAWTC 1 cut(s) 451
PkrI GCNGC 8 cut(s) 322, 337, 340, 403, 511, 586, 658, 661
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 144, 642
PspGI CCWGG 2 cut(s) 144, 642
PspN4I GGNNCC 5 cut(s) 31, 54, 262, 342, 648
PspPI GGNCC 1 cut(s) 674
PstNI CAGNNNCTG 2 cut(s) 350, 383
PsuI RGATCY 1 cut(s) 694
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 4 cut(s) 116, 253, 292, 576
RsaNI GTAC 4 cut(s) 115, 252, 291, 575
SaqAI TTAA 2 cut(s) 159, 516
SatI GCNGC 8 cut(s) 321, 336, 339, 402, 510, 585, 657, 660
Sau3AI GATC 2 cut(s) 42, 694
Sau96I GGNCC 1 cut(s) 674
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 146, 644
SduI GDGCHC 1 cut(s) 265
SfaNI GCATC 2 cut(s) 123, 413
SinI GGWCC 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 427, 555, 722
SsiI CCGC 4 cut(s) 71, 338, 639, 689
SspMI CTAG 5 cut(s) 176, 237, 288, 297, 455
StyD4I CCNGG 2 cut(s) 144, 642
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 1 cut(s) 508
TaqI TCGA 2 cut(s) 39, 45
TasI AATT 3 cut(s) 427, 555, 722
TatI WGTACW 1 cut(s) 290
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 2 cut(s) 159, 516
Tru9I TTAA 2 cut(s) 159, 516
TseI GCWGC 7 cut(s) 320, 335, 401, 509, 584, 656, 659
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 674
XapI RAATTY 1 cut(s) 555
XbaI TCTAGA 2 cut(s) 175, 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XspI CTAG 5 cut(s) 176, 237, 288, 297, 455
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.