Rh2DG588100

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010664
Physical Location & Seq
Reverse (-)
82082916 .. 82089067
6152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG588100.1

Sequence Viewer

Length: 1188 bp
ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACCAACTTCGAGATCGAAGTGGAACCCCAGCAGTTGGTTGCGGATGTCAAGCAAATTATAGAGACGGCACAGGGTTCAGATGTGTACCCTGCCTCAAAACAGATGCTTATTCACCAGGGGAAAGTTCTTAAGGATGCCACGACTCTAGAAGAAAATCAAGTTGCTGAAAACAGCTTTATTGTGATAATGTTGAGCAAGGCTTCACCTAGTGGAAGCTCCAGTACGCAAGGTGCCCCCAAAAGTCAGGCTCAACCTGCTAGTACTCCTAGCACGACGACAACACCAGCGGCAGCTCCGGCTCCAGCTCCGGCTCCGGCTCCGGCTCCTGCACCTGCCCCAGTTGTGGCACAGTCACAACCTGTTGTTGAAACTGCTGCTGTTGTAGCTCCCACTGATTCTTCAGTAACTGATGTGTATGGGCAAGCTGCATCAAATCTTGTTGCAGGAAATAATTTAGAAGTTATCGTTCAACAGATTCTAGATATGGGTGGAGGAAGTTGGGATAGGGATACCGTTCTTCGTGCTTTACGTGCTGCATTTAACAACCCTGAAAGGGCTGTTGAATATCTTTATTCCGGAATTCCCGAACAAGCTGAAGTACCTCCAGCTGCCCAAGTTCCTGTTGGTGAACAGGCAGTAAATCCTCCAGCAATAAATCCTCCCGCCCAGGCTCCACAAGCAGCAGCGCCTACTGGTGGTCCAAATGCAAACCCGCTGGATCTGTTTCCACAGGGCCTTCCTAGTGTTGGTGCAAATGCCGGAGCGGGCAATTTGGATTTTCTGCGAAACAGTCCACAGTTTCAAGCTTTGAGAACTATGGTGCAAGCAAACCCTCAAATTCTTCAGCCTATGCTCCTTGAGTTGGGGAAGCAAAATCCACATCTAATGCAGCTCATTCAAGCACATCAAGCTGACTTCTTACGCTTGATAAATGAGCCTGTTGAGGGGGGTGGCGAAGGGAACCTTTTGGGTCAATTGGGTTCAGCGGCAATGCCACAGGCTGTGACTGTCACCCCAGAGGAGCGAGAGGCCATTGAACGTCTTGAAGCTATGGGTTTTGATCGGGCCCTAGTATTGGAGGTATACTTTGCATGCAATAAGAATGAGGAGCTGGCGGCGAACTATCTTTTGGATCACATGCATGAATTTGAGGAATGA

Protein Analysis

395

Amino Acids

41.61

Weight (kDa)

4.57

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 4e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 7.2e-17 Ubiquitin family
UBA PF00627 164 - 200 2e-10 UBA/TS-N domain
XPC-binding PF09280 268 - 323 2.3e-22 XPC-binding domain
UBA PF00627 351 - 386 8.7e-12 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
Acc36I ACCTGC 2 cut(s) 292, 370
AccB1I GGYRCC 2 cut(s) 29, 260
AccB7I CCANNNNNTGG 1 cut(s) 64
AccBSI CCGCTC 1 cut(s) 794
AccI GTMKAC 1 cut(s) 1113
AccIII TCCGGA 1 cut(s) 605
AciI CCGC 7 cut(s) 71, 317, 693, 743, 794, 1016, 1145
AclWI GGATC 2 cut(s) 756, 1170
AcsI RAATTY 3 cut(s) 609, 867, 1175
AcuI CTGAAG 3 cut(s) 414, 645, 857
AdeI CACNNNGTG 1 cut(s) 239
AfaI GTAC 4 cut(s) 116, 253, 292, 630
AfiI CCNNNNNNNGG 8 cut(s) 64, 373, 583, 725, 776, 892, 974, 1105
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 8 cut(s) 25, 398, 500, 593, 833, 929, 1067, 1076
AjnI CCWGG 2 cut(s) 144, 696
AjuI GAANNNNNNNTTGG 2 cut(s) 1142, 1174
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 756, 1170
AlwNI CAGNNNCTG 1 cut(s) 437
Aor13HI TCCGGA 1 cut(s) 605
AoxI GGCC 3 cut(s) 763, 1059, 1095
ApaI GGGCCC 1 cut(s) 1099
ApeKI GCWGC 8 cut(s) 320, 404, 455, 563, 638, 710, 713, 919
ApoI RAATTY 3 cut(s) 609, 867, 1175
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 4 cut(s) 728, 763, 1095, 1096
AsuHPI GGTGA 4 cut(s) 134, 225, 668, 1033
AvaII GGWCC 1 cut(s) 728
BaeGI GKGCMC 2 cut(s) 265, 1099
BanI GGYRCC 2 cut(s) 29, 260
BanII GRGCYC 1 cut(s) 1099
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
BbvI GCAGC 8 cut(s) 332, 391, 442, 550, 625, 722, 725, 931
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 146, 698
BciVI GTATCC 1 cut(s) 532
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 7 cut(s) 176, 237, 288, 297, 509, 771, 1100
BfoI RGCGCY 1 cut(s) 719
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 2 cut(s) 292, 370
BfuI GTATCC 1 cut(s) 532
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 146, 698
Bme18I GGWCC 1 cut(s) 728
BmgT120I GGNCC 4 cut(s) 728, 763, 1095, 1096
BmrFI CCNGG 2 cut(s) 146, 698
BmrI ACTGGG 1 cut(s) 362
BmsI GCATC 3 cut(s) 123, 154, 467
BmuI ACTGGG 1 cut(s) 362
BpmI CTGGAG 4 cut(s) 232, 315, 618, 660
BpuEI CTTGAG 1 cut(s) 908
BsaAI YACGTR 1 cut(s) 560
BsaJI CCNNGG 2 cut(s) 145, 696
BsaWI WCCGGW 1 cut(s) 605
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 373, 583, 725, 776, 892, 974, 1105
Bse1I ACTGG 3 cut(s) 249, 368, 727
Bse3DI GCAATG 1 cut(s) 1026
BseAI TCCGGA 1 cut(s) 605
BseBI CCWGG 2 cut(s) 146, 698
BseDI CCNNGG 2 cut(s) 145, 696
BseGI GGATG 2 cut(s) 79, 169
BseLI CCNNNNNNNGG 8 cut(s) 64, 373, 583, 725, 776, 892, 974, 1105
BseMI GCAATG 1 cut(s) 1026
BseNI ACTGG 3 cut(s) 249, 368, 727
BseRI GAGGAG 2 cut(s) 1064, 1151
BseSI GKGCMC 2 cut(s) 265, 1099
BseXI GCAGC 8 cut(s) 332, 391, 442, 550, 625, 722, 725, 931
BseYI CCCAGC 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 3 cut(s) 765, 1061, 1097
BshNI GGYRCC 2 cut(s) 29, 260
BsiSI CCGG 6 cut(s) 326, 338, 344, 350, 606, 789
BslI CCNNNNNNNGG 8 cut(s) 64, 373, 583, 725, 776, 892, 974, 1105
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 3 cut(s) 765, 1061, 1097
Bsp120I GGGCCC 1 cut(s) 1095
Bsp1286I GDGCHC 2 cut(s) 265, 1099
Bsp13I TCCGGA 1 cut(s) 605
Bsp143I GATC 4 cut(s) 42, 748, 1090, 1162
BspACI CCGC 7 cut(s) 71, 317, 693, 743, 794, 1016, 1145
BspANI GGCC 3 cut(s) 765, 1061, 1097
BspEI TCCGGA 1 cut(s) 605
BspMI ACCTGC 2 cut(s) 292, 370
BspPI GGATC 2 cut(s) 756, 1170
BspT107I GGYRCC 2 cut(s) 29, 260
BspTI CTTAAG 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 794
BsrDI GCAATG 1 cut(s) 1026
BsrI ACTGG 3 cut(s) 249, 368, 727
BssECI CCNNGG 2 cut(s) 145, 696
BssMI GATC 4 cut(s) 42, 748, 1090, 1162
BssNAI GTATAC 1 cut(s) 1114
Bst1107I GTATAC 1 cut(s) 1114
Bst2UI CCWGG 2 cut(s) 146, 698
Bst4CI ACNGT 5 cut(s) 381, 544, 821, 828, 1039
BstAFI CTTAAG 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 5 cut(s) 453, 796, 855, 1123, 1143
BstF5I GGATG 2 cut(s) 79, 169
BstH2I RGCGCY 1 cut(s) 719
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 4 cut(s) 45, 751, 1093, 1165
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 42, 748, 1090, 1162
BstMWI GCNNNNNNNGC 6 cut(s) 284, 326, 413, 560, 707, 938
BstNI CCWGG 2 cut(s) 146, 698
BstNSI RCATGY 2 cut(s) 1125, 1171
BstSCI CCNGG 2 cut(s) 144, 696
BstSLI GKGCMC 2 cut(s) 265, 1099
BstV1I GCAGC 8 cut(s) 332, 391, 442, 550, 625, 722, 725, 931
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
BstZ17I GTATAC 1 cut(s) 1114
BsuI GTATCC 1 cut(s) 532
BsuRI GGCC 3 cut(s) 765, 1061, 1097
BtsCI GGATG 2 cut(s) 79, 169
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 2 cut(s) 292, 370
Cac8I GCNNGC 5 cut(s) 453, 796, 855, 1123, 1143
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 4 cut(s) 728, 763, 1095, 1096
Csp6I GTAC 4 cut(s) 115, 252, 291, 629
CviAII CATG 3 cut(s) 1122, 1168, 1172
CviQI GTAC 4 cut(s) 115, 252, 291, 629
DpnI GATC 4 cut(s) 44, 750, 1092, 1164
DpnII GATC 4 cut(s) 42, 748, 1090, 1162
DraIII CACNNNGTG 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 1099
Eco47I GGWCC 1 cut(s) 728
Eco57I CTGAAG 3 cut(s) 414, 645, 857
EcoO109I RGGNCCY 2 cut(s) 763, 1096
EcoRI GAATTC 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 144, 696
EcoT22I ATGCAT 1 cut(s) 1173
EcoT38I GRGCYC 1 cut(s) 1099
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 3 cut(s) 1125, 1171, 1175
FalI AAGNNNNNCTT 2 cut(s) 978, 1010
FatI CATG 3 cut(s) 1121, 1167, 1171
FauI CCCGC 3 cut(s) 700, 750, 787
FblI GTMKAC 1 cut(s) 1113
FokI GGATG 2 cut(s) 86, 176
FriOI GRGCYC 1 cut(s) 1099
FspBI CTAG 7 cut(s) 176, 237, 288, 297, 509, 771, 1100
GlaI GCGC 1 cut(s) 717
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 4 cut(s) 232, 315, 618, 660
HaeII RGCGCY 1 cut(s) 719
HaeIII GGCC 3 cut(s) 765, 1061, 1097
HapII CCGG 6 cut(s) 326, 338, 344, 350, 606, 789
HhaI GCGC 1 cut(s) 718
Hin1II CATG 3 cut(s) 1125, 1171, 1175
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HindIII AAGCTT 1 cut(s) 834
HinfI GANTC 3 cut(s) 172, 425, 505
HpaII CCGG 6 cut(s) 326, 338, 344, 350, 606, 789
HphI GGTGA 4 cut(s) 134, 225, 668, 1033
Hpy166II GTNNAC 4 cut(s) 115, 659, 824, 1114
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 7 cut(s) 16, 40, 176, 509, 606, 614, 1073
Hpy8I GTNNAC 4 cut(s) 115, 659, 824, 1114
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 776, 980
HpyCH4III ACNGT 5 cut(s) 381, 544, 821, 828, 1039
HpyCH4IV ACGT 2 cut(s) 559, 1069
HpyF10VI GCNNNNNNNGC 6 cut(s) 284, 326, 413, 560, 707, 938
HpySE526I ACGT 2 cut(s) 559, 1069
Hsp92II CATG 3 cut(s) 1125, 1171, 1175
HspAI GCGC 1 cut(s) 716
Kpn2I TCCGGA 1 cut(s) 605
Kzo9I GATC 4 cut(s) 42, 748, 1090, 1162
Lsp1109I GCAGC 8 cut(s) 332, 391, 442, 550, 625, 722, 725, 931
LweI GCATC 3 cut(s) 123, 154, 467
MaeI CTAG 7 cut(s) 176, 237, 288, 297, 509, 771, 1100
MaeII ACGT 2 cut(s) 559, 1069
MaeIII GTNAC 4 cut(s) 381, 433, 1033, 1039
MalI GATC 4 cut(s) 44, 750, 1092, 1164
MbiI CCGCTC 1 cut(s) 794
MboI GATC 4 cut(s) 42, 748, 1090, 1162
MboII GAAGA 4 cut(s) 191, 420, 539, 863
MfeI CAATTG 1 cut(s) 1004
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 2 cut(s) 265, 1099
MluCI AATT 7 cut(s) 84, 481, 609, 799, 867, 1004, 1175
MlyI GAGTC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 1173
MroI TCCGGA 1 cut(s) 605
MseI TTAA 2 cut(s) 159, 570
MslI CAYNNNNRTG 1 cut(s) 1170
MspA1I CMGCKG 4 cut(s) 317, 638, 745, 1016
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 6 cut(s) 326, 338, 344, 350, 606, 789
MspR9I CCNGG 2 cut(s) 146, 698
MunI CAATTG 1 cut(s) 1004
MvaI CCWGG 2 cut(s) 146, 698
MwoI GCNNNNNNNGC 6 cut(s) 284, 326, 413, 560, 707, 938
NdeII GATC 4 cut(s) 42, 748, 1090, 1162
NlaIII CATG 3 cut(s) 1125, 1171, 1175
NmuCI GTSAC 3 cut(s) 381, 1033, 1039
NsiI ATGCAT 1 cut(s) 1173
NspI RCATGY 2 cut(s) 1125, 1171
PaeI GCATGC 1 cut(s) 1125
PaqCI CACCTGC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 556
PfeI GAWTC 2 cut(s) 425, 505
PflMI CCANNNNNTGG 1 cut(s) 64
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 560
Psp6I CCWGG 2 cut(s) 144, 696
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 2 cut(s) 144, 696
PspOMI GGGCCC 1 cut(s) 1095
PspPI GGNCC 4 cut(s) 728, 763, 1095, 1096
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 1 cut(s) 748
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 4 cut(s) 116, 253, 292, 630
RsaNI GTAC 4 cut(s) 115, 252, 291, 629
RseI CAYNNNNRTG 1 cut(s) 1170
SaqAI TTAA 2 cut(s) 159, 570
Sau3AI GATC 4 cut(s) 42, 748, 1090, 1162
Sau96I GGNCC 4 cut(s) 728, 763, 1095, 1096
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 146, 698
SduI GDGCHC 2 cut(s) 265, 1099
SfaNI GCATC 3 cut(s) 123, 154, 467
SinI GGWCC 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 1170
SmlI CTYRAG 2 cut(s) 158, 887
SmoI CTYRAG 2 cut(s) 158, 887
SphI GCATGC 1 cut(s) 1125
Sse9I AATT 7 cut(s) 84, 481, 609, 799, 867, 1004, 1175
SsiI CCGC 7 cut(s) 71, 317, 693, 743, 794, 1016, 1145
SspMI CTAG 7 cut(s) 176, 237, 288, 297, 509, 771, 1100
StyD4I CCNGG 2 cut(s) 144, 696
TaaI ACNGT 5 cut(s) 381, 544, 821, 828, 1039
TaiI ACGT 2 cut(s) 562, 1072
TaqI TCGA 2 cut(s) 39, 45
TasI AATT 7 cut(s) 84, 481, 609, 799, 867, 1004, 1175
TatI WGTACW 1 cut(s) 290
TauI GCSGC 3 cut(s) 320, 1019, 1148
TfiI GAWTC 2 cut(s) 425, 505
Tru1I TTAA 2 cut(s) 159, 570
Tru9I TTAA 2 cut(s) 159, 570
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 3 cut(s) 381, 1033, 1039
TseI GCWGC 8 cut(s) 320, 404, 455, 563, 638, 710, 713, 919
Tsp45I GTSAC 3 cut(s) 381, 1033, 1039
TspDTI ATGAA 2 cut(s) 17, 1188
TspRI CASTG 1 cut(s) 427
Van91I CCANNNNNTGG 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 728
XapI RAATTY 3 cut(s) 609, 867, 1175
XbaI TCTAGA 2 cut(s) 175, 508
XceI RCATGY 2 cut(s) 1125, 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 650
XmiI GTMKAC 1 cut(s) 1113
XspI CTAG 7 cut(s) 176, 237, 288, 297, 509, 771, 1100
ZrmI AGTACT 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.