Rh2CG547600

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010664
Physical Location & Seq
Reverse (-)
72735547 .. 72740698
5152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG547600.1

Sequence Viewer

Length: 1164 bp
ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACCAACTTCGAGATCGAAGTGGAACCCCAGCAGTTGGTTGCGGATGTCAAGCAAATTATAGAGACGGCACAGGGTGCAGATGTGTACCCTGCCTCAAAACAGATGCTTATTCACCAGGGGAAAGTTCTTAAGGACGCCACGACTCTAGAAGAAAATCAAGTTGCTGAAAACAGCTTTATTGTGATAATGTTGAGCAAGGCTTCACCTAGTGGAAGCTCCAGTACGCAAGGTGCCCCCAAAAGTCAGGCTCAACCTGCTAGTACTCCTAGCACGACGACAACACCAGCGGCAGCTCCGGCTCCTGCACCTGCCCCAGTTGTGGCACAGTCACAACCTGTTGTTGAAACTGCTGCTGTTGTAGCTCCCACTGATTCTTCAGTAACTGATGTGTATGGGCAAGCTGCATCAAATCTTGTTGCAGGAAATAATTTAGAAGTTATCGTTCAACAGATTCTAGATATGGGTGGAGGAAGTTGGGATAGGGATACCGTTCTTCGTGCTTTACGTGCTGCATTTAACAACCCTGAAAGGGCTGTTGAATATCTTTATTCCGGAATTCCCGAACAAGCTGAAGTACCTCCAGCTGCCCAAGTTCCTGTTGGTGAACAGGCAGTAAATCCTCCAGCAATAAATCCTCCCGCCCAGGCTCCACAAGCAGCAGCGCCTGCTGGTGGTCCAAATGCAAACCCGCTGGATCTGTTTCCACAGGGCCTTCCTAGTGTTGGTGCAAATGCCGGAGCAGGCAATTTGGATTTTCTGCGAAACAGTCCACAGTTTCAAGCTTTGAGAACTATGGTGCAAGCAAACCCTCAAATTCTGCAGCCTATGCTCCTTGAGTTGGGGAAGCAAAATCCACATCTAATGCAGCTCATTCAAGCACATCAAGCTGACTTCTTACGCTTGATAAATGAGCCTGTTGAGGGGGGTGGCGAAGGGAACCTTTTGGGTCAATTGGGTTCAGCGGCAATGCCACAGGCTGTGACTGTCACCCCAGAGGAGCGAGAGGCCATTGAACGTCTTGAAGCTATGGGTTTTGATCGGGCCCTAGTATTGGAGGTATACTTTGCATGCAATAAGAATGAGGAGCTGGCGGCGAACTATCTTTTGGATCACATGCATGAATTTGAGGAATGA

Protein Analysis

387

Amino Acids

40.89

Weight (kDa)

4.57

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 3.1e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 6.4e-17 Ubiquitin family
UBA PF00627 156 - 192 1.9e-10 UBA/TS-N domain
XPC-binding PF09280 260 - 315 2.2e-22 XPC-binding domain
UBA PF00627 343 - 378 8.4e-12 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 2 cut(s) 292, 346
AccB1I GGYRCC 2 cut(s) 29, 260
AccB7I CCANNNNNTGG 1 cut(s) 64
AccI GTMKAC 1 cut(s) 1089
AccIII TCCGGA 1 cut(s) 581
AciI CCGC 6 cut(s) 71, 317, 669, 719, 992, 1121
AclWI GGATC 2 cut(s) 732, 1146
AcsI RAATTY 3 cut(s) 585, 843, 1151
AcuI CTGAAG 2 cut(s) 390, 621
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 2 cut(s) 104, 239
AfaI GTAC 4 cut(s) 116, 253, 292, 606
AfiI CCNNNNNNNGG 8 cut(s) 64, 349, 559, 701, 752, 868, 950, 1081
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 8 cut(s) 25, 374, 476, 569, 809, 905, 1043, 1052
AjnI CCWGG 2 cut(s) 144, 672
AjuI GAANNNNNNNTTGG 2 cut(s) 1118, 1150
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 732, 1146
AlwNI CAGNNNCTG 2 cut(s) 413, 695
Aor13HI TCCGGA 1 cut(s) 581
AoxI GGCC 3 cut(s) 739, 1035, 1071
ApaI GGGCCC 1 cut(s) 1075
ApeKI GCWGC 9 cut(s) 320, 380, 431, 539, 614, 686, 689, 850, 895
ApoI RAATTY 3 cut(s) 585, 843, 1151
AspLEI GCGC 1 cut(s) 694
AspS9I GGNCC 4 cut(s) 704, 739, 1071, 1072
AsuHPI GGTGA 4 cut(s) 134, 225, 644, 1009
AvaII GGWCC 1 cut(s) 704
BaeGI GKGCMC 2 cut(s) 265, 1075
BanI GGYRCC 2 cut(s) 29, 260
BanII GRGCYC 1 cut(s) 1075
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
BbvI GCAGC 9 cut(s) 332, 367, 418, 526, 601, 698, 701, 862, 907
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 146, 674
BciVI GTATCC 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 7 cut(s) 176, 237, 288, 297, 485, 747, 1076
BfmI CTRYAG 1 cut(s) 848
BfoI RGCGCY 1 cut(s) 695
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 2 cut(s) 292, 346
BfuI GTATCC 1 cut(s) 508
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 146, 674
Bme18I GGWCC 1 cut(s) 704
BmgT120I GGNCC 4 cut(s) 704, 739, 1071, 1072
BmiI GGNNCC 7 cut(s) 31, 54, 262, 330, 678, 968, 1073
BmrFI CCNGG 2 cut(s) 146, 674
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 2 cut(s) 123, 443
BmuI ACTGGG 1 cut(s) 338
BpmI CTGGAG 3 cut(s) 232, 594, 636
BpuEI CTTGAG 1 cut(s) 884
BsaAI YACGTR 1 cut(s) 536
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 145, 672
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 349, 559, 701, 752, 868, 950, 1081
Bse1I ACTGG 2 cut(s) 249, 344
Bse3DI GCAATG 1 cut(s) 1002
BseAI TCCGGA 1 cut(s) 581
BseBI CCWGG 2 cut(s) 146, 674
BseDI CCNNGG 2 cut(s) 145, 672
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 8 cut(s) 64, 349, 559, 701, 752, 868, 950, 1081
BseMI GCAATG 1 cut(s) 1002
BseNI ACTGG 2 cut(s) 249, 344
BseRI GAGGAG 2 cut(s) 1040, 1127
BseSI GKGCMC 2 cut(s) 265, 1075
BseXI GCAGC 9 cut(s) 332, 367, 418, 526, 601, 698, 701, 862, 907
BseYI CCCAGC 1 cut(s) 57
BsgI GTGCAG 2 cut(s) 126, 318
BshFI GGCC 3 cut(s) 741, 1037, 1073
BshNI GGYRCC 2 cut(s) 29, 260
BsiSI CCGG 3 cut(s) 326, 582, 765
BslI CCNNNNNNNGG 8 cut(s) 64, 349, 559, 701, 752, 868, 950, 1081
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 3 cut(s) 741, 1037, 1073
Bsp120I GGGCCC 1 cut(s) 1071
Bsp1286I GDGCHC 2 cut(s) 265, 1075
Bsp13I TCCGGA 1 cut(s) 581
Bsp143I GATC 4 cut(s) 42, 724, 1066, 1138
BspACI CCGC 6 cut(s) 71, 317, 669, 719, 992, 1121
BspANI GGCC 3 cut(s) 741, 1037, 1073
BspEI TCCGGA 1 cut(s) 581
BspLI GGNNCC 7 cut(s) 31, 54, 262, 330, 678, 968, 1073
BspMAI CTGCAG 1 cut(s) 852
BspMI ACCTGC 2 cut(s) 292, 346
BspPI GGATC 2 cut(s) 732, 1146
BspT107I GGYRCC 2 cut(s) 29, 260
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 1002
BsrI ACTGG 2 cut(s) 249, 344
BssECI CCNNGG 2 cut(s) 145, 672
BssMI GATC 4 cut(s) 42, 724, 1066, 1138
BssNAI GTATAC 1 cut(s) 1090
BssNI GRCGYC 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 1090
Bst2UI CCWGG 2 cut(s) 146, 674
Bst4CI ACNGT 5 cut(s) 357, 520, 797, 804, 1015
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 3 cut(s) 104, 695, 856
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 6 cut(s) 429, 696, 772, 831, 1099, 1119
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 695
BstHHI GCGC 1 cut(s) 694
BstKTI GATC 4 cut(s) 45, 727, 1069, 1141
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 42, 724, 1066, 1138
BstMWI GCNNNNNNNGC 9 cut(s) 104, 284, 326, 389, 536, 683, 695, 856, 914
BstNI CCWGG 2 cut(s) 146, 674
BstNSI RCATGY 2 cut(s) 1101, 1147
BstSCI CCNGG 2 cut(s) 144, 672
BstSFI CTRYAG 1 cut(s) 848
BstSLI GKGCMC 2 cut(s) 265, 1075
BstV1I GCAGC 9 cut(s) 332, 367, 418, 526, 601, 698, 701, 862, 907
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
BstZ17I GTATAC 1 cut(s) 1090
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 3 cut(s) 741, 1037, 1073
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 396
BveI ACCTGC 2 cut(s) 292, 346
Cac8I GCNNGC 6 cut(s) 429, 696, 772, 831, 1099, 1119
CaiI CAGNNNCTG 2 cut(s) 413, 695
CfoI GCGC 1 cut(s) 694
Cfr13I GGNCC 4 cut(s) 704, 739, 1071, 1072
CseI GACGC 1 cut(s) 173
Csp6I GTAC 4 cut(s) 115, 252, 291, 605
CviAII CATG 3 cut(s) 1098, 1144, 1148
CviQI GTAC 4 cut(s) 115, 252, 291, 605
DpnI GATC 4 cut(s) 44, 726, 1068, 1140
DpnII GATC 4 cut(s) 42, 724, 1066, 1138
DraIII CACNNNGTG 2 cut(s) 104, 239
Eco24I GRGCYC 1 cut(s) 1075
Eco47I GGWCC 1 cut(s) 704
Eco57I CTGAAG 2 cut(s) 390, 621
EcoO109I RGGNCCY 2 cut(s) 739, 1072
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 2 cut(s) 144, 672
EcoT22I ATGCAT 1 cut(s) 1149
EcoT38I GRGCYC 1 cut(s) 1075
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 3 cut(s) 1101, 1147, 1151
FalI AAGNNNNNCTT 2 cut(s) 954, 986
FatI CATG 3 cut(s) 1097, 1143, 1147
FauI CCCGC 2 cut(s) 676, 726
FblI GTMKAC 1 cut(s) 1089
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 1075
FspBI CTAG 7 cut(s) 176, 237, 288, 297, 485, 747, 1076
GlaI GCGC 1 cut(s) 693
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 3 cut(s) 232, 594, 636
HaeII RGCGCY 1 cut(s) 695
HaeIII GGCC 3 cut(s) 741, 1037, 1073
HapII CCGG 3 cut(s) 326, 582, 765
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 694
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 1101, 1147, 1151
Hin6I GCGC 1 cut(s) 692
HinP1I GCGC 1 cut(s) 692
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 3 cut(s) 172, 401, 481
HpaII CCGG 3 cut(s) 326, 582, 765
HphI GGTGA 4 cut(s) 134, 225, 644, 1009
Hpy166II GTNNAC 4 cut(s) 115, 635, 800, 1090
Hpy188III TCNNGA 7 cut(s) 16, 40, 176, 485, 582, 590, 1049
Hpy8I GTNNAC 4 cut(s) 115, 635, 800, 1090
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 752, 956
HpyCH4III ACNGT 5 cut(s) 357, 520, 797, 804, 1015
HpyCH4IV ACGT 2 cut(s) 535, 1045
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 284, 326, 389, 536, 683, 695, 856, 914
HpySE526I ACGT 2 cut(s) 535, 1045
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 1101, 1147, 1151
HspAI GCGC 1 cut(s) 692
Kpn2I TCCGGA 1 cut(s) 581
Kzo9I GATC 4 cut(s) 42, 724, 1066, 1138
LmnI GCTCC 9 cut(s) 251, 328, 334, 397, 682, 767, 864, 1027, 1114
Lsp1109I GCAGC 9 cut(s) 332, 367, 418, 526, 601, 698, 701, 862, 907
LweI GCATC 2 cut(s) 123, 443
MaeI CTAG 7 cut(s) 176, 237, 288, 297, 485, 747, 1076
MaeII ACGT 2 cut(s) 535, 1045
MaeIII GTNAC 4 cut(s) 357, 409, 1009, 1015
MalI GATC 4 cut(s) 44, 726, 1068, 1140
MboI GATC 4 cut(s) 42, 724, 1066, 1138
MboII GAAGA 3 cut(s) 191, 396, 515
MfeI CAATTG 1 cut(s) 980
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 265, 1075
MluCI AATT 7 cut(s) 84, 457, 585, 775, 843, 980, 1151
MlyI GAGTC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 1149
MroI TCCGGA 1 cut(s) 581
MseI TTAA 2 cut(s) 159, 546
MslI CAYNNNNRTG 1 cut(s) 1146
MspA1I CMGCKG 4 cut(s) 317, 614, 721, 992
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 3 cut(s) 326, 582, 765
MspR9I CCNGG 2 cut(s) 146, 674
MunI CAATTG 1 cut(s) 980
MvaI CCWGG 2 cut(s) 146, 674
MwoI GCNNNNNNNGC 9 cut(s) 104, 284, 326, 389, 536, 683, 695, 856, 914
NdeII GATC 4 cut(s) 42, 724, 1066, 1138
NlaIII CATG 3 cut(s) 1101, 1147, 1151
NlaIV GGNNCC 7 cut(s) 31, 54, 262, 330, 678, 968, 1073
NmuCI GTSAC 3 cut(s) 357, 1009, 1015
NsiI ATGCAT 1 cut(s) 1149
NspI RCATGY 2 cut(s) 1101, 1147
PaeI GCATGC 1 cut(s) 1101
PaqCI CACCTGC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PfeI GAWTC 2 cut(s) 401, 481
PflMI CCANNNNNTGG 1 cut(s) 64
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 144, 672
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 2 cut(s) 144, 672
PspN4I GGNNCC 7 cut(s) 31, 54, 262, 330, 678, 968, 1073
PspOMI GGGCCC 1 cut(s) 1071
PspPI GGNCC 4 cut(s) 704, 739, 1071, 1072
PstI CTGCAG 1 cut(s) 852
PstNI CAGNNNCTG 2 cut(s) 413, 695
PsuI RGATCY 1 cut(s) 724
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 4 cut(s) 116, 253, 292, 606
RsaNI GTAC 4 cut(s) 115, 252, 291, 605
RseI CAYNNNNRTG 1 cut(s) 1146
SaqAI TTAA 2 cut(s) 159, 546
Sau3AI GATC 4 cut(s) 42, 724, 1066, 1138
Sau96I GGNCC 4 cut(s) 704, 739, 1071, 1072
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 146, 674
SduI GDGCHC 2 cut(s) 265, 1075
SfaNI GCATC 2 cut(s) 123, 443
SfcI CTRYAG 1 cut(s) 848
SinI GGWCC 1 cut(s) 704
SmiMI CAYNNNNRTG 1 cut(s) 1146
SmlI CTYRAG 2 cut(s) 158, 863
SmoI CTYRAG 2 cut(s) 158, 863
SphI GCATGC 1 cut(s) 1101
Sse9I AATT 7 cut(s) 84, 457, 585, 775, 843, 980, 1151
SsiI CCGC 6 cut(s) 71, 317, 669, 719, 992, 1121
SspMI CTAG 7 cut(s) 176, 237, 288, 297, 485, 747, 1076
StyD4I CCNGG 2 cut(s) 144, 672
TaaI ACNGT 5 cut(s) 357, 520, 797, 804, 1015
TaiI ACGT 2 cut(s) 538, 1048
TaqI TCGA 2 cut(s) 39, 45
TasI AATT 7 cut(s) 84, 457, 585, 775, 843, 980, 1151
TatI WGTACW 1 cut(s) 290
TauI GCSGC 3 cut(s) 320, 995, 1124
TfiI GAWTC 2 cut(s) 401, 481
Tru1I TTAA 2 cut(s) 159, 546
Tru9I TTAA 2 cut(s) 159, 546
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 3 cut(s) 357, 1009, 1015
TseI GCWGC 9 cut(s) 320, 380, 431, 539, 614, 686, 689, 850, 895
Tsp45I GTSAC 3 cut(s) 357, 1009, 1015
TspDTI ATGAA 2 cut(s) 17, 1164
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 704
XapI RAATTY 3 cut(s) 585, 843, 1151
XbaI TCTAGA 2 cut(s) 175, 484
XceI RCATGY 2 cut(s) 1101, 1147
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 1089
XspI CTAG 7 cut(s) 176, 237, 288, 297, 485, 747, 1076
ZrmI AGTACT 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.