Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010664

Physical Location & Seq

Genomic Coordinates Reverse (-)

5592927 .. 5595158

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAGGTTTTTGTCAAGACTTTGAAGGGCACCAACTTCGAGATCGAAGTGAAACCCGAAGAGACGGTTGCTGATGTCAAGACAATTATAGAGACGGTACAGGGTGCAGATGTGTACCCTGCCCCGCAGCAGATGCTTATTCATCAGGGGAAAGTTCTCAAGGATGACACAACTCTAGAAGCAAATAATGTTGCTGAAAATAGTTTTATTGTGATAATGTTAACCAAGCCTAAGGCCTCACCAGCCGGAGCCTCCAGTAAGCAAGGTGCAGCCACAAGTCAGCCCCAACCTGCTAGTACTGCACCTACCACGGCAACACCACCCCCAGCAGCTCCAGCTCCTGCGCCAGCTGTGGCAGAGGTTTTGGGTGTACAATATGTCACAGCCTGCTGCCCAAATTGCTGCTGTTGTAGCTCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050896 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

141

Amino Acids

14.55

Weight (kDa)

5.31

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 73	6.7e-07	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 76	1.3e-18	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16090 AT5G38470 AT5G38470
fragaria_vesca	FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica	MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica	Prupe.3G238000_v2.0.a1
pyrus_communis	pycom09g01280 pycom17g07680
rosa_chinensis	RchiOBHm_Chr2g0162901
rosa_laevigata	RLG00000021360
rosa_rugosa	Rorug02G0499200
rosa_samantha	Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana	Rw2G046780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	1 cut(s)	125
AfaI	GTAC	4 cut(s)	99, 116, 298, 372
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	4 cut(s)	332, 338, 350, 414
AluI	AGCT	4 cut(s)	332, 338, 350, 414
Alw26I	GTCTC	2 cut(s)	56, 86
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	5 cut(s)	127, 269, 329, 390, 402
AspLEI	GCGC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	231
AxyI	CCTNAGG	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	29
BbvI	GCAGC	5 cut(s)	139, 281, 341, 377, 389
BceAI	ACGGC	1 cut(s)	327
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BcoDI	GTCTC	2 cut(s)	56, 86
BfaI	CTAG	2 cut(s)	176, 294
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	5 cut(s)	128, 270, 330, 391, 403
BlsI	GCNGC	5 cut(s)	129, 271, 331, 392, 404
BmcAI	AGTACT	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	31, 250
BmsI	GCATC	1 cut(s)	123
BpmI	CTGGAG	2 cut(s)	238, 318
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	255
Bse21I	CCTNAGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	5 cut(s)	139, 281, 341, 377, 389
BseYI	CCCAGC	1 cut(s)	325
BsgI	GTGCAG	3 cut(s)	126, 285, 288
BshFI	GGCC	1 cut(s)	236
BshNI	GGYRCC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	246
BsmAI	GTCTC	2 cut(s)	56, 86
BsmBI	CGTCTC	2 cut(s)	56, 86
BsnI	GGCC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	236
BspLI	GGNNCC	2 cut(s)	31, 250
BspMI	ACCTGC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	67, 97
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	348, 388
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	2 cut(s)	56, 86
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	6 cut(s)	133, 242, 299, 335, 399, 411
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	5 cut(s)	139, 281, 341, 377, 389
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	348, 388
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	346
Csp6I	GTAC	4 cut(s)	98, 115, 297, 371
CviQI	GTAC	4 cut(s)	98, 115, 297, 371
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	231
Esp3I	CGTCTC	2 cut(s)	56, 86
FaiI	YATR	2 cut(s)	89, 378
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	5 cut(s)	128, 270, 330, 391, 403
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	5 cut(s)	128, 270, 330, 391, 403
FspBI	CTAG	2 cut(s)	176, 294
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	5 cut(s)	128, 270, 330, 391, 403
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	2 cut(s)	238, 318
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	1 cut(s)	246
HhaI	GCGC	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	231
Hpy166II	GTNNAC	3 cut(s)	115, 222, 371
Hpy188III	TCNNGA	4 cut(s)	16, 40, 79, 176
Hpy8I	GTNNAC	3 cut(s)	115, 222, 371
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	67, 97
HpyCH4V	TGCA	3 cut(s)	107, 269, 302
HpyF10VI	GCNNNNNNNGC	6 cut(s)	133, 242, 299, 335, 399, 411
HpyF3I	CTNAG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	344
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	4 cut(s)	248, 337, 343, 419
Lsp1109I	GCAGC	5 cut(s)	139, 281, 341, 377, 389
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	176, 294
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	2 cut(s)	84, 397
MnlI	CCTC	3 cut(s)	247, 262, 352
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	6 cut(s)	133, 242, 299, 335, 399, 411
NdeII	GATC	1 cut(s)	42
NlaIV	GGNNCC	2 cut(s)	31, 250
NmuCI	GTSAC	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	236
PkrI	GCNGC	5 cut(s)	129, 271, 331, 392, 404
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	31, 250
PstNI	CAGNNNCTG	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	4 cut(s)	99, 116, 298, 372
RsaNI	GTAC	4 cut(s)	98, 115, 297, 371
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	5 cut(s)	128, 270, 330, 391, 403
Sau3AI	GATC	1 cut(s)	42
ScaI	AGTACT	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	9 cut(s)	9, 268, 292, 307, 334, 340, 352, 363, 416
SfaNI	GCATC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	84, 397
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	2 cut(s)	176, 294
StuI	AGGCCT	1 cut(s)	236
TaaI	ACNGT	2 cut(s)	67, 97
TaqI	TCGA	2 cut(s)	39, 45
TasI	AATT	2 cut(s)	84, 397
TatI	WGTACW	2 cut(s)	296, 370
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	5 cut(s)	127, 269, 329, 390, 402
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	17, 131
XbaI	TCTAGA	1 cut(s)	175
XspI	CTAG	2 cut(s)	176, 294
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.