MD09G1087400.v1.1

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010664
Physical Location & Seq
Reverse (-)
6260686 .. 6265552
4867 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1087400.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGAAGGTTTTTGTCAAGACTTTGAAGGGCACCAACTTCGAGATCGAAGTGAAACCCGAAGAGACGGTTGCTGATGTCAAGACAATTATAGAGACGGCACAGGGTGCAGATGTGTACCCTGCCCCACAGCAGATGCTTATTCATCAGGGGAAAGTTCTTAAGGATGACACAACTCTAGAACAAAATAATGTTGCTGAAAATAGTTTTATCGTGATAATGTTAACCAAGCCTAAGGCCTCACCAGCCGGAGCCTCCAGTAAGCAAGGTGCAGCCACAAGTCAGGCCCAACCTGCTAGTACTGCTCCTACCTCTGCCGCACCACCCCCAGCAGCTCCAGCTCCAGCTCCTGCTCCAGCTCCTGCACCAGCCGTGGCAGAACCACAGCCCGCCGCTCAAACTGCTGCTGTTGTAGCTCCTACTGATTCAAGATCAGATGTGTATGGCCAAGCTGCATCAAACCTAGTTGCAGGAACTACTTTAGAGTCTACCGTTCAGCAGATTCTAGATATGGGTGGAGGAAGTTGGGATCGGGAAACCGTTGTCCGTGCTTTACGGGCTGCTTTTAACAACCCTGAAAGGGCTGTTGAGTACCTATATTCTGGCATTCCTGAGCAAGCTGAAGCCCCACCAGCGGCCCAAGTTCCTGCTGGTGAACAGGCAGCAAATCCTATGGCCGCAAATCCTCCAGCTCAGGCTCCACAACCAGTAGCACCTACTGGTGGGCCCAATGCAAATCCACTTGATCTTTTTCCACAGGGCCTTCCCAACATGGGTGCAAATGCCGGTGCGGGCAATTTGGATTTCCTGCGCAACAGTCCCCAGTTCCAAGCCTTGCGAGCTATGGTGCAAGCCAACCCCCAAATTCTACAGCCTATGCTTCAAGAGTTGGGGAAACAAAATCCACATCTAATGCAGCTCATTCAAGCTCATCAAGCTGACTTCTTACGCTTGATTAATGAACCCGTTGAAGGGGGTGAAGGGAACCTGTTGGAGCAGTTGGGTGCAGCAGTGCCGCAGGCTGTGACCGTCACCCCTGAAGAGCGAGAGGCCATTGAACGCCTAGAAGCTATGGGTTTCGATCGGGCGCTAGTGCTGGAGGTATACTTTGCATGCAACAAGAACGAGGAGCTGGCGGCCAACTATCTTCTCGATCACATGCACGAGTTTGAGGAATGA

Protein Analysis

392

Amino Acids

41.21

Weight (kDa)

4.6

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 4.3e-07 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 1.9e-18 Ubiquitin family
UBA PF00627 161 - 198 1.5e-11 UBA/TS-N domain
XPC-binding PF09280 266 - 321 1.4e-23 XPC-binding domain
UBA PF00627 347 - 382 8.6e-12 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 809
Acc36I ACCTGC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 392
AccI GTMKAC 2 cut(s) 485, 1101
AciI CCGC 8 cut(s) 315, 387, 390, 632, 675, 788, 1013, 1133
AclWI GGATC 1 cut(s) 534
AcoI YGGCCR 3 cut(s) 442, 672, 1134
AcsI RAATTY 1 cut(s) 861
AcuI CTGAAG 2 cut(s) 639, 1056
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 3 cut(s) 116, 298, 590
AfiI CCNNNNNNNGG 6 cut(s) 577, 631, 719, 770, 968, 969
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 6 cut(s) 25, 426, 881, 923, 968, 1055
Alw26I GTCTC 2 cut(s) 56, 86
AlwI GGATC 1 cut(s) 534
AlwNI CAGNNNCTG 2 cut(s) 347, 359
AoxI GGCC 9 cut(s) 234, 282, 442, 633, 672, 722, 757, 1047, 1134
ApaI GGGCCC 1 cut(s) 726
ApeKI GCWGC 8 cut(s) 269, 329, 401, 449, 557, 659, 913, 1004
ApoI RAATTY 1 cut(s) 861
AseI ATTAAT 1 cut(s) 954
AspLEI GCGC 2 cut(s) 810, 1087
AspS9I GGNCC 5 cut(s) 283, 634, 722, 723, 757
AsuHPI GGTGA 4 cut(s) 231, 662, 986, 1021
AxyI CCTNAGG 1 cut(s) 231
BaeGI GKGCMC 2 cut(s) 32, 726
BalI TGGCCA 1 cut(s) 444
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 726
BauI CACGAG 1 cut(s) 1160
BbvI GCAGC 8 cut(s) 281, 341, 388, 436, 544, 671, 925, 1016
BceAI ACGGC 2 cut(s) 111, 353
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BcoDI GTCTC 2 cut(s) 56, 86
BfaI CTAG 6 cut(s) 176, 294, 461, 503, 1061, 1088
BfmI CTRYAG 1 cut(s) 866
BfoI RGCGCY 1 cut(s) 1088
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 298
BmcAI AGTACT 1 cut(s) 298
BmgT120I GGNCC 5 cut(s) 283, 634, 722, 723, 757
BmiI GGNNCC 5 cut(s) 31, 250, 696, 724, 983
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 2 cut(s) 123, 461
BmuI ACTGGG 1 cut(s) 814
BpmI CTGGAG 6 cut(s) 238, 318, 324, 336, 669, 1115
Bpu10I CCTNAGC 2 cut(s) 609, 690
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 6 cut(s) 577, 631, 719, 770, 968, 969
Bse118I RCCGGY 1 cut(s) 782
Bse1I ACTGG 4 cut(s) 255, 704, 721, 820
Bse21I CCTNAGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 6 cut(s) 577, 631, 719, 770, 968, 969
BseMII CTCAG 2 cut(s) 600, 704
BseNI ACTGG 4 cut(s) 255, 704, 721, 820
BseRI GAGGAG 1 cut(s) 1139
BseSI GKGCMC 2 cut(s) 32, 726
BseXI GCAGC 8 cut(s) 281, 341, 388, 436, 544, 671, 925, 1016
BseYI CCCAGC 1 cut(s) 325
BsgI GTGCAG 4 cut(s) 126, 288, 345, 1023
Bsh1285I CGRYCG 1 cut(s) 1081
BshFI GGCC 9 cut(s) 236, 284, 444, 635, 674, 724, 759, 1049, 1136
BshNI GGYRCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 1081
BsiSI CCGG 2 cut(s) 246, 783
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 6 cut(s) 577, 631, 719, 770, 968, 969
BsmAI GTCTC 2 cut(s) 56, 86
BsmBI CGTCTC 2 cut(s) 56, 86
BsmFI GGGAC 1 cut(s) 801
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 9 cut(s) 236, 284, 444, 635, 674, 724, 759, 1049, 1136
Bsp120I GGGCCC 1 cut(s) 722
Bsp1286I GDGCHC 2 cut(s) 32, 726
Bsp143I GATC 6 cut(s) 42, 428, 526, 742, 1078, 1150
BspACI CCGC 8 cut(s) 315, 387, 390, 632, 675, 788, 1013, 1133
BspANI GGCC 9 cut(s) 236, 284, 444, 635, 674, 724, 759, 1049, 1136
BspCNI CTCAG 2 cut(s) 601, 703
BspLI GGNNCC 5 cut(s) 31, 250, 696, 724, 983
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 1 cut(s) 534
BspQI GCTCTTC 1 cut(s) 1032
BspT107I GGYRCC 1 cut(s) 29
BspTI CTTAAG 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 782
BsrI ACTGG 4 cut(s) 255, 704, 721, 820
BssAI RCCGGY 1 cut(s) 782
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 6 cut(s) 42, 428, 526, 742, 1078, 1150
BssNAI GTATAC 1 cut(s) 1102
BssSI CACGAG 1 cut(s) 1160
Bst1107I GTATAC 1 cut(s) 1102
Bst2BI CACGAG 1 cut(s) 1160
Bst4CI ACNGT 5 cut(s) 67, 490, 538, 815, 1027
Bst6I CTCTTC 2 cut(s) 54, 1032
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 8 cut(s) 387, 615, 790, 837, 849, 1017, 1111, 1131
BstDEI CTNAG 3 cut(s) 231, 609, 690
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 1088
BstHHI GCGC 2 cut(s) 810, 1087
BstKTI GATC 6 cut(s) 45, 431, 529, 745, 1081, 1153
BstMAI GTCTC 2 cut(s) 56, 86
BstMBI GATC 6 cut(s) 42, 428, 526, 742, 1078, 1150
BstMCI CGRYCG 1 cut(s) 1081
BstNSI RCATGY 2 cut(s) 1113, 1159
BstSFI CTRYAG 1 cut(s) 866
BstSLI GKGCMC 2 cut(s) 32, 726
BstV1I GCAGC 8 cut(s) 281, 341, 388, 436, 544, 671, 925, 1016
BstZ17I GTATAC 1 cut(s) 1102
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 9 cut(s) 236, 284, 444, 635, 674, 724, 759, 1049, 1136
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 1 cut(s) 1014
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 8 cut(s) 387, 615, 790, 837, 849, 1017, 1111, 1131
CaiI CAGNNNCTG 2 cut(s) 347, 359
CfoI GCGC 2 cut(s) 810, 1087
Cfr10I RCCGGY 1 cut(s) 782
Cfr13I GGNCC 5 cut(s) 283, 634, 722, 723, 757
Csp6I GTAC 3 cut(s) 115, 297, 589
CviAII CATG 3 cut(s) 769, 1110, 1156
CviQI GTAC 3 cut(s) 115, 297, 589
DdeI CTNAG 3 cut(s) 231, 609, 690
DpnI GATC 6 cut(s) 44, 430, 528, 744, 1080, 1152
DpnII GATC 6 cut(s) 42, 428, 526, 742, 1078, 1150
DraIII CACNNNGTG 1 cut(s) 104
EaeI YGGCCR 3 cut(s) 442, 672, 1134
Eam1104I CTCTTC 2 cut(s) 54, 1032
EarI CTCTTC 2 cut(s) 54, 1032
Eco147I AGGCCT 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 726
Eco57I CTGAAG 2 cut(s) 639, 1056
Eco81I CCTNAGG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 757
EcoT38I GRGCYC 1 cut(s) 726
Esp3I CGTCTC 2 cut(s) 56, 86
FaeI CATG 3 cut(s) 772, 1113, 1159
FaqI GGGAC 1 cut(s) 801
FatI CATG 3 cut(s) 768, 1109, 1155
FauI CCCGC 2 cut(s) 394, 781
FblI GTMKAC 2 cut(s) 485, 1101
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 726
FspBI CTAG 6 cut(s) 176, 294, 461, 503, 1061, 1088
FspI TGCGCA 1 cut(s) 809
GlaI GCGC 2 cut(s) 809, 1086
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 6 cut(s) 238, 318, 324, 336, 669, 1115
HaeII RGCGCY 1 cut(s) 1088
HaeIII GGCC 9 cut(s) 236, 284, 444, 635, 674, 724, 759, 1049, 1136
HapII CCGG 2 cut(s) 246, 783
HhaI GCGC 2 cut(s) 810, 1087
Hin1II CATG 3 cut(s) 772, 1113, 1159
Hin6I GCGC 2 cut(s) 808, 1085
HinP1I GCGC 2 cut(s) 808, 1085
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 3 cut(s) 422, 482, 499
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 2 cut(s) 246, 783
HphI GGTGA 4 cut(s) 231, 662, 986, 1021
Hpy166II GTNNAC 5 cut(s) 115, 222, 486, 653, 1102
Hpy188I TCNGA 1 cut(s) 433
Hpy8I GTNNAC 5 cut(s) 115, 222, 486, 653, 1102
HpyAV CCTTC 4 cut(s) 19, 770, 962, 971
HpyCH4III ACNGT 5 cut(s) 67, 490, 538, 815, 1027
HpyF3I CTNAG 3 cut(s) 231, 609, 690
Hsp92II CATG 3 cut(s) 772, 1113, 1159
HspAI GCGC 2 cut(s) 808, 1085
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 6 cut(s) 42, 428, 526, 742, 1078, 1150
LguI GCTCTTC 1 cut(s) 1032
Lsp1109I GCAGC 8 cut(s) 281, 341, 388, 436, 544, 671, 925, 1016
LweI GCATC 2 cut(s) 123, 461
MaeI CTAG 6 cut(s) 176, 294, 461, 503, 1061, 1088
MaeIII GTNAC 2 cut(s) 1021, 1027
MalI GATC 6 cut(s) 44, 430, 528, 744, 1080, 1152
MbiI CCGCTC 1 cut(s) 392
MboI GATC 6 cut(s) 42, 428, 526, 742, 1078, 1150
MboII GAAGA 3 cut(s) 71, 1049, 1136
MhlI GDGCHC 2 cut(s) 32, 726
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 3 cut(s) 84, 793, 861
MluNI TGGCCA 1 cut(s) 444
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 969
MnlI CCTC 9 cut(s) 247, 262, 319, 509, 693, 1039, 1090, 1117, 1162
Mox20I TGGCCA 1 cut(s) 444
MscI TGGCCA 1 cut(s) 444
MseI TTAA 4 cut(s) 159, 221, 564, 954
Msp20I TGGCCA 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 246, 783
Mva1269I GAATGC 1 cut(s) 603
NdeII GATC 6 cut(s) 42, 428, 526, 742, 1078, 1150
NlaIII CATG 3 cut(s) 772, 1113, 1159
NlaIV GGNNCC 5 cut(s) 31, 250, 696, 724, 983
NmuCI GTSAC 2 cut(s) 1021, 1027
NsbI TGCGCA 1 cut(s) 809
NspI RCATGY 2 cut(s) 1113, 1159
PaeI GCATGC 1 cut(s) 1113
PceI AGGCCT 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 1032
PctI GAATGC 1 cut(s) 603
PfeI GAWTC 2 cut(s) 422, 499
Ple19I CGATCG 1 cut(s) 1081
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PshBI ATTAAT 1 cut(s) 954
PspFI CCCAGC 1 cut(s) 325
PspN4I GGNNCC 5 cut(s) 31, 250, 696, 724, 983
PspOMI GGGCCC 1 cut(s) 722
PspPI GGNCC 5 cut(s) 283, 634, 722, 723, 757
PstNI CAGNNNCTG 2 cut(s) 347, 359
PvuI CGATCG 1 cut(s) 1081
RsaI GTAC 3 cut(s) 116, 298, 590
RsaNI GTAC 3 cut(s) 115, 297, 589
SapI GCTCTTC 1 cut(s) 1032
SaqAI TTAA 4 cut(s) 159, 221, 564, 954
Sau3AI GATC 6 cut(s) 42, 428, 526, 742, 1078, 1150
Sau96I GGNCC 5 cut(s) 283, 634, 722, 723, 757
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 1 cut(s) 491
SduI GDGCHC 2 cut(s) 32, 726
SfaNI GCATC 2 cut(s) 123, 461
SfcI CTRYAG 1 cut(s) 866
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SphI GCATGC 1 cut(s) 1113
Sse9I AATT 3 cut(s) 84, 793, 861
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 8 cut(s) 315, 387, 390, 632, 675, 788, 1013, 1133
SspMI CTAG 6 cut(s) 176, 294, 461, 503, 1061, 1088
StuI AGGCCT 1 cut(s) 236
TaaI ACNGT 5 cut(s) 67, 490, 538, 815, 1027
TaqI TCGA 4 cut(s) 39, 45, 1077, 1149
TasI AATT 3 cut(s) 84, 793, 861
TatI WGTACW 1 cut(s) 296
TauI GCSGC 6 cut(s) 317, 392, 635, 677, 1015, 1136
TfiI GAWTC 2 cut(s) 422, 499
Tru1I TTAA 4 cut(s) 159, 221, 564, 954
Tru9I TTAA 4 cut(s) 159, 221, 564, 954
TscAI CASTG 1 cut(s) 1014
TseFI GTSAC 2 cut(s) 1021, 1027
TseI GCWGC 8 cut(s) 269, 329, 401, 449, 557, 659, 913, 1004
Tsp45I GTSAC 2 cut(s) 1021, 1027
TspDTI ATGAA 3 cut(s) 17, 131, 972
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 1 cut(s) 1014
Vha464I CTTAAG 1 cut(s) 158
VspI ATTAAT 1 cut(s) 954
XapI RAATTY 1 cut(s) 861
XbaI TCTAGA 2 cut(s) 175, 502
XceI RCATGY 2 cut(s) 1113, 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 644
XmiI GTMKAC 2 cut(s) 485, 1101
XspI CTAG 6 cut(s) 176, 294, 461, 503, 1061, 1088
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.