Rorug02G0499200

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010664
Physical Location & Seq
Reverse (-)
63168325 .. 63170786
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0499200.1

Sequence Viewer

Length: 714 bp
ATGGAGGTAGGTCCAAAGGTAGTGCTTCTGTTGAGAGACCCAGAGGGCTTCGGCCAAGCCATCTCCGACGCATTCCACCCTAACCCAACTGCTTCCGTCACAGAGGAAAGCTTCGAGCTTTCGCTGGAGCGCTATGGGATCCGAAATTGCAAAGCTTCTGGAAAAGTTCGTCACTTTCTTGATCAGCACGGTCAATATGAGGTGTCAGTGTTGCTTATGGAATATTATGAATCACCGATACTAGCATGTGCTTTTAATGAAGTTCTGGCTCAACTAGCAGGACAAAAATCATCCTCAATGCCCACCATTGTTGCCCCCTTTTTCGTTGCATCATCCAAGCTTAAATGGGACAGTAAATCTGCAACAAAGTTTGACAGCAAAGGTTCACTTTATGGTATACAGATAGGTCCAGAAACAGACATAAGCAAGGCCATCATTGCCAGAACCCAGAAAGCACCACCGTCATTACAGATTCATCATGAACCTCTAGCCTGCCTTCTTCAGTTGGTCCGTGTCCTGAATTTGCCAACTCTTGTTCTTATAGGGCAAAGGGGTCAGCGAATTTCTGATAAAGAAGAGCTTGAGATACTTTATGAAATTGGGGAACTTTTGGCAAACACTTGTAAGGTAAACTTCTCAAGAGGCAAAATCACATGGAAGCCAACAAAAAAATCGAAGGATGAACAGGAGCCATGGCGTGCATTGTATGGTTAA

Protein Analysis

237

Amino Acids

26.4

Weight (kDa)

7.67

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7894 PF25428 1 - 237 6.8e-111 Domain of unknown function (DUF7894)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 397
AclWI GGATC 2 cut(s) 133, 146
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 2 cut(s) 520, 561
AcuI CTGAAG 1 cut(s) 485
AfeI AGCGCT 1 cut(s) 131
AluBI AGCT 5 cut(s) 111, 118, 155, 340, 580
AluI AGCT 5 cut(s) 111, 118, 155, 340, 580
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 2 cut(s) 133, 146
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 2 cut(s) 52, 429
ApoI RAATTY 2 cut(s) 520, 561
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 3 cut(s) 11, 407, 508
AsuHPI GGTGA 1 cut(s) 225
AvaII GGWCC 3 cut(s) 11, 407, 508
BamHI GGATCC 1 cut(s) 138
BccI CCATC 2 cut(s) 68, 440
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 3 cut(s) 242, 275, 488
BfoI RGCGCY 1 cut(s) 133
Bme18I GGWCC 3 cut(s) 11, 407, 508
BmgT120I GGNCC 3 cut(s) 11, 407, 508
BmiI GGNNCC 2 cut(s) 140, 690
BmsI GCATC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 602, 622
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 692
Bse3DI GCAATG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 3 cut(s) 290, 332, 685
BseMI GCAATG 1 cut(s) 435
BshFI GGCC 2 cut(s) 54, 431
BslFI GGGAC 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 54, 431
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 138, 181
Bsp19I CCATGG 1 cut(s) 692
BspANI GGCC 2 cut(s) 54, 431
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 140, 690
BspPI GGATC 2 cut(s) 133, 146
BspQI GCTCTTC 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 2 cut(s) 138, 181
BssNAI GTATAC 1 cut(s) 398
BssT1I CCWWGG 1 cut(s) 692
Bst1107I GTATAC 1 cut(s) 398
Bst4CI ACNGT 3 cut(s) 191, 353, 462
Bst6I CTCTTC 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 493, 699
BstDSI CCRYGG 1 cut(s) 692
BstF5I GGATG 3 cut(s) 290, 332, 685
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 2 cut(s) 141, 184
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 138, 181
BstMWI GCNNNNNNNGC 2 cut(s) 275, 437
BstNSI RCATGY 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 398
BsuRI GGCC 2 cut(s) 54, 431
BtgI CCRYGG 1 cut(s) 692
BtsCI GGATG 3 cut(s) 290, 332, 685
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 493, 699
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 11, 407, 508
CseI GACGC 1 cut(s) 77
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 4 cut(s) 246, 479, 654, 693
DpnI GATC 2 cut(s) 140, 183
DpnII GATC 2 cut(s) 138, 181
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 3 cut(s) 11, 407, 508
Eco47III AGCGCT 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 692
FaeI CATG 4 cut(s) 249, 482, 657, 696
FalI AAGNNNNNCTT 6 cut(s) 372, 404, 564, 596, 617, 649
FaqI GGGAC 1 cut(s) 362
FatI CATG 4 cut(s) 245, 478, 653, 692
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 397
FokI GGATG 3 cut(s) 277, 319, 692
FspBI CTAG 3 cut(s) 242, 275, 488
GlaI GCGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 2 cut(s) 54, 431
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 132
Hin1II CATG 4 cut(s) 249, 482, 657, 696
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 3 cut(s) 109, 153, 338
HinfI GANTC 2 cut(s) 230, 472
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 3 cut(s) 386, 398, 631
Hpy188I TCNGA 3 cut(s) 67, 143, 568
Hpy188III TCNNGA 6 cut(s) 159, 179, 410, 479, 517, 639
Hpy8I GTNNAC 3 cut(s) 386, 398, 631
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 506, 670
HpyCH4III ACNGT 3 cut(s) 191, 353, 462
HpyCH4V TGCA 4 cut(s) 150, 329, 362, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 437
Hsp92II CATG 4 cut(s) 249, 482, 657, 696
HspAI GCGC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 138, 181
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 2 cut(s) 127, 688
LweI GCATC 1 cut(s) 338
MaeI CTAG 3 cut(s) 242, 275, 488
MaeIII GTNAC 2 cut(s) 97, 170
MalI GATC 2 cut(s) 140, 183
MboI GATC 2 cut(s) 138, 181
MboII GAAGA 2 cut(s) 491, 587
MflI RGATCY 1 cut(s) 138
MluCI AATT 4 cut(s) 145, 520, 561, 597
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 6 cut(s) 37, 97, 193, 304, 495, 635
MseI TTAA 3 cut(s) 255, 342, 712
Mva1269I GAATGC 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 275, 437
NcoI CCATGG 1 cut(s) 692
NdeII GATC 2 cut(s) 138, 181
NlaIII CATG 4 cut(s) 249, 482, 657, 696
NlaIV GGNNCC 2 cut(s) 140, 690
NmuCI GTSAC 2 cut(s) 97, 170
NspI RCATGY 1 cut(s) 249
PagI TCATGA 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 570
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 230, 472
PspN4I GGNNCC 2 cut(s) 140, 690
PspPI GGNCC 3 cut(s) 11, 407, 508
PsuI RGATCY 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 255, 342, 712
Sau3AI GATC 2 cut(s) 138, 181
Sau96I GGNCC 3 cut(s) 11, 407, 508
SfaNI GCATC 1 cut(s) 338
SinI GGWCC 3 cut(s) 11, 407, 508
SmlI CTYRAG 2 cut(s) 581, 637
SmoI CTYRAG 2 cut(s) 581, 637
Sse9I AATT 4 cut(s) 145, 520, 561, 597
SspI AATATT 1 cut(s) 224
SspMI CTAG 3 cut(s) 242, 275, 488
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 3 cut(s) 191, 353, 462
TaqI TCGA 2 cut(s) 114, 674
TasI AATT 4 cut(s) 145, 520, 561, 597
TfiI GAWTC 2 cut(s) 230, 472
Tru1I TTAA 3 cut(s) 255, 342, 712
Tru9I TTAA 3 cut(s) 255, 342, 712
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 2 cut(s) 97, 170
Tsp45I GTSAC 2 cut(s) 97, 170
TspDTI ATGAA 6 cut(s) 243, 273, 464, 495, 609, 696
TspGWI ACGGA 2 cut(s) 85, 500
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 3 cut(s) 11, 407, 508
XapI RAATTY 2 cut(s) 520, 561
XceI RCATGY 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 397
XspI CTAG 3 cut(s) 242, 275, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.