Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010664

Physical Location & Seq

Genomic Coordinates Reverse (-)

79511947 .. 79517518

Gene Structure 5572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG577900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCTTATTCACCAGGGGAAAGTTCTTAAGGACGCCACGACTCTAGAAGAAAATCAAGTTGCTGAAAACAGCTTTATTGTGATAATGTTGAGCAAGGCTTCACCTAGTGGAAGCTCCAGTACGCAAGGTGCCCCCAAAAGTCAGGCTCAACCTGCTAGTACTCCTAGCACGACGACAACACCAGCGGCAGCTCCGGCTCCTGCACCTGCCCCAGTTGTGGCACAGTCACAACCTGTTGTTGAAACTGCTGCTGTTGTAGCTCCCACTGATTCTTCAGTAACTGATGTGTATGGGCAAGCTGCATCAAATCTTGTTGCAGGAAATAATTTAGAAGTTATCGTTCAACAGATTCTAGATATGGGTGGAGGAAGTTGGGATAGGGATACCGTTCTTCGTGCTTTACGTGCTGCATTTAACAACCCTGAAAGGGCTGTTGAATATCTTTATTCCGGAATTCCCGAACAAGCTGAAGTACCTCCAGCTGCCCAAGTTCCTGTTGGTGAACAGGCAGTAAATCCTCCAGCAATAAATCCTCCCGCCCAGGCTCCACAAGCAGCAGCGCCTGCTGGTGGTCCAAATGCAAACCCGCTGGATCTGTTTCCACAGGGCCTTCCTAGTGTTGGTGCAAATGCCGGAGCAGGCAATTTGGATTTTCTGCGAAACAGTCCACAGTTTCAAGCTTTGAGAACTATGGTGCAAGCAAACCCTCAAATTCTGCAGCCTATGCTCCTTGAGTTGGGGAAGCAAAATCCACATCTAATGCAGCTCATTCAAGCACATCAAGCTGACTTCTTACGCTTGATAAATGAGCCTGTTGAGGGGGGTGGCGAAGGGAACCTTTTGGGTCAATTGGGTTCAGCGGCAATGCCACAGGCTGTGACTGTCACCCCAGAGGAGCGAGAGGCCATTGAACGTCTTGAAGCTATGGGTTTTGATCGGGCCCTAGTATTGGAGGTATACTTTGCATGCAATAAGAATGAGGAGCTGGCGGCGAACTATCTTTTGGATCACATGCATGAATTTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050896 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

343

Amino Acids

36.02

Weight (kDa)

4.51

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	112 - 148	1.6e-10	UBA/TS-N domain
XPC-binding	PF09280	216 - 271	1.8e-22	XPC-binding domain
UBA	PF00627	299 - 334	7.2e-12	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16090 AT5G38470 AT5G38470
fragaria_vesca	FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica	MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica	Prupe.3G238000_v2.0.a1
pyrus_communis	pycom09g01280 pycom17g07680
rosa_chinensis	RchiOBHm_Chr2g0162901
rosa_laevigata	RLG00000021360
rosa_rugosa	Rorug02G0499200
rosa_samantha	Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana	Rw2G046780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	2 cut(s)	160, 214
AccB1I	GGYRCC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	957
AccIII	TCCGGA	1 cut(s)	449
AciI	CCGC	5 cut(s)	185, 537, 587, 860, 989
AclWI	GGATC	2 cut(s)	600, 1014
AcsI	RAATTY	3 cut(s)	453, 711, 1019
AcuI	CTGAAG	2 cut(s)	258, 489
AcyI	GRCGYC	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	121, 160, 474
AfiI	CCNNNNNNNGG	7 cut(s)	217, 427, 569, 620, 736, 818, 949
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	7 cut(s)	242, 344, 437, 677, 773, 911, 920
AjnI	CCWGG	2 cut(s)	12, 540
AjuI	GAANNNNNNNTTGG	2 cut(s)	986, 1018
AlwI	GGATC	2 cut(s)	600, 1014
AlwNI	CAGNNNCTG	2 cut(s)	281, 563
Aor13HI	TCCGGA	1 cut(s)	449
AoxI	GGCC	3 cut(s)	607, 903, 939
ApaI	GGGCCC	1 cut(s)	943
ApeKI	GCWGC	9 cut(s)	188, 248, 299, 407, 482, 554, 557, 718, 763
ApoI	RAATTY	3 cut(s)	453, 711, 1019
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	4 cut(s)	572, 607, 939, 940
AsuHPI	GGTGA	3 cut(s)	93, 512, 877
AvaII	GGWCC	1 cut(s)	572
BaeGI	GKGCMC	2 cut(s)	133, 943
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	943
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbvI	GCAGC	9 cut(s)	200, 235, 286, 394, 469, 566, 569, 730, 775
BciT130I	CCWGG	2 cut(s)	14, 542
BciVI	GTATCC	1 cut(s)	376
BfaI	CTAG	7 cut(s)	44, 105, 156, 165, 353, 615, 944
BfmI	CTRYAG	1 cut(s)	716
BfoI	RGCGCY	1 cut(s)	563
BfrI	CTTAAG	1 cut(s)	26
BfuAI	ACCTGC	2 cut(s)	160, 214
BfuI	GTATCC	1 cut(s)	376
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	14, 542
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	4 cut(s)	572, 607, 939, 940
BmiI	GGNNCC	5 cut(s)	130, 198, 546, 836, 941
BmrFI	CCNGG	2 cut(s)	14, 542
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	206
BpmI	CTGGAG	3 cut(s)	100, 462, 504
BpuEI	CTTGAG	1 cut(s)	752
BsaAI	YACGTR	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	13, 540
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	7 cut(s)	217, 427, 569, 620, 736, 818, 949
Bse1I	ACTGG	2 cut(s)	117, 212
Bse3DI	GCAATG	1 cut(s)	870
BseAI	TCCGGA	1 cut(s)	449
BseBI	CCWGG	2 cut(s)	14, 542
BseDI	CCNNGG	2 cut(s)	13, 540
BseLI	CCNNNNNNNGG	7 cut(s)	217, 427, 569, 620, 736, 818, 949
BseMI	GCAATG	1 cut(s)	870
BseNI	ACTGG	2 cut(s)	117, 212
BseRI	GAGGAG	2 cut(s)	908, 995
BseSI	GKGCMC	2 cut(s)	133, 943
BseXI	GCAGC	9 cut(s)	200, 235, 286, 394, 469, 566, 569, 730, 775
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	609, 905, 941
BshNI	GGYRCC	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	194, 450, 633
BslI	CCNNNNNNNGG	7 cut(s)	217, 427, 569, 620, 736, 818, 949
BsnI	GGCC	3 cut(s)	609, 905, 941
Bsp120I	GGGCCC	1 cut(s)	939
Bsp1286I	GDGCHC	2 cut(s)	133, 943
Bsp13I	TCCGGA	1 cut(s)	449
Bsp143I	GATC	3 cut(s)	592, 934, 1006
BspACI	CCGC	5 cut(s)	185, 537, 587, 860, 989
BspANI	GGCC	3 cut(s)	609, 905, 941
BspEI	TCCGGA	1 cut(s)	449
BspLI	GGNNCC	5 cut(s)	130, 198, 546, 836, 941
BspMAI	CTGCAG	1 cut(s)	720
BspMI	ACCTGC	2 cut(s)	160, 214
BspPI	GGATC	2 cut(s)	600, 1014
BspT107I	GGYRCC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	2 cut(s)	117, 212
BssECI	CCNNGG	2 cut(s)	13, 540
BssMI	GATC	3 cut(s)	592, 934, 1006
BssNAI	GTATAC	1 cut(s)	958
BssNI	GRCGYC	1 cut(s)	33
Bst1107I	GTATAC	1 cut(s)	958
Bst2UI	CCWGG	2 cut(s)	14, 542
Bst4CI	ACNGT	5 cut(s)	225, 388, 665, 672, 883
BstACI	GRCGYC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	26
BstAPI	GCANNNNNTGC	2 cut(s)	563, 724
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	6 cut(s)	297, 564, 640, 699, 967, 987
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	3 cut(s)	595, 937, 1009
BstMBI	GATC	3 cut(s)	592, 934, 1006
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 194, 257, 404, 551, 563, 724, 782
BstNI	CCWGG	2 cut(s)	14, 542
BstNSI	RCATGY	2 cut(s)	969, 1015
BstSCI	CCNGG	2 cut(s)	12, 540
BstSFI	CTRYAG	1 cut(s)	716
BstSLI	GKGCMC	2 cut(s)	133, 943
BstV1I	GCAGC	9 cut(s)	200, 235, 286, 394, 469, 566, 569, 730, 775
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BstZ17I	GTATAC	1 cut(s)	958
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	609, 905, 941
BtsIMutI	CAGTG	1 cut(s)	264
BveI	ACCTGC	2 cut(s)	160, 214
Cac8I	GCNNGC	6 cut(s)	297, 564, 640, 699, 967, 987
CaiI	CAGNNNCTG	2 cut(s)	281, 563
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	4 cut(s)	572, 607, 939, 940
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	120, 159, 473
CviAII	CATG	3 cut(s)	966, 1012, 1016
CviQI	GTAC	3 cut(s)	120, 159, 473
DpnI	GATC	3 cut(s)	594, 936, 1008
DpnII	GATC	3 cut(s)	592, 934, 1006
DraIII	CACNNNGTG	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	943
Eco47I	GGWCC	1 cut(s)	572
Eco57I	CTGAAG	2 cut(s)	258, 489
EcoO109I	RGGNCCY	2 cut(s)	607, 940
EcoRI	GAATTC	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	12, 540
EcoT22I	ATGCAT	1 cut(s)	1017
EcoT38I	GRGCYC	1 cut(s)	943
FaeI	CATG	3 cut(s)	969, 1015, 1019
FaiI	YATR	9 cut(s)	291, 359, 692, 725, 926, 958, 967, 1013, 1017
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FatI	CATG	3 cut(s)	965, 1011, 1015
FauI	CCCGC	2 cut(s)	544, 594
FblI	GTMKAC	1 cut(s)	957
FriOI	GRGCYC	1 cut(s)	943
FspBI	CTAG	7 cut(s)	44, 105, 156, 165, 353, 615, 944
GlaI	GCGC	1 cut(s)	561
GsuI	CTGGAG	3 cut(s)	100, 462, 504
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	3 cut(s)	609, 905, 941
HapII	CCGG	3 cut(s)	194, 450, 633
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	969, 1015, 1019
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	3 cut(s)	40, 269, 349
HpaII	CCGG	3 cut(s)	194, 450, 633
HphI	GGTGA	3 cut(s)	93, 512, 877
Hpy166II	GTNNAC	3 cut(s)	503, 668, 958
Hpy188III	TCNNGA	5 cut(s)	44, 353, 450, 458, 917
Hpy8I	GTNNAC	3 cut(s)	503, 668, 958
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	620, 824
HpyCH4III	ACNGT	5 cut(s)	225, 388, 665, 672, 883
HpyCH4IV	ACGT	2 cut(s)	403, 913
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 194, 257, 404, 551, 563, 724, 782
HpySE526I	ACGT	2 cut(s)	403, 913
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	969, 1015, 1019
HspAI	GCGC	1 cut(s)	560
Kpn2I	TCCGGA	1 cut(s)	449
Kzo9I	GATC	3 cut(s)	592, 934, 1006
LmnI	GCTCC	9 cut(s)	119, 196, 202, 265, 550, 635, 732, 895, 982
Lsp1109I	GCAGC	9 cut(s)	200, 235, 286, 394, 469, 566, 569, 730, 775
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	7 cut(s)	44, 105, 156, 165, 353, 615, 944
MaeII	ACGT	2 cut(s)	403, 913
MaeIII	GTNAC	4 cut(s)	225, 277, 877, 883
MalI	GATC	3 cut(s)	594, 936, 1008
MboI	GATC	3 cut(s)	592, 934, 1006
MboII	GAAGA	3 cut(s)	59, 264, 383
MfeI	CAATTG	1 cut(s)	848
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	2 cut(s)	133, 943
MluCI	AATT	6 cut(s)	325, 453, 643, 711, 848, 1019
MlyI	GAGTC	1 cut(s)	34
Mph1103I	ATGCAT	1 cut(s)	1017
MroI	TCCGGA	1 cut(s)	449
MseI	TTAA	2 cut(s)	27, 414
MslI	CAYNNNNRTG	1 cut(s)	1014
MspA1I	CMGCKG	4 cut(s)	185, 482, 589, 860
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	3 cut(s)	194, 450, 633
MspR9I	CCNGG	2 cut(s)	14, 542
MunI	CAATTG	1 cut(s)	848
MvaI	CCWGG	2 cut(s)	14, 542
MwoI	GCNNNNNNNGC	8 cut(s)	152, 194, 257, 404, 551, 563, 724, 782
NdeII	GATC	3 cut(s)	592, 934, 1006
NlaIII	CATG	3 cut(s)	969, 1015, 1019
NlaIV	GGNNCC	5 cut(s)	130, 198, 546, 836, 941
NmuCI	GTSAC	3 cut(s)	225, 877, 883
NsiI	ATGCAT	1 cut(s)	1017
NspI	RCATGY	2 cut(s)	969, 1015
PaeI	GCATGC	1 cut(s)	969
PaqCI	CACCTGC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	269, 349
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	12, 540
PspGI	CCWGG	2 cut(s)	12, 540
PspN4I	GGNNCC	5 cut(s)	130, 198, 546, 836, 941
PspOMI	GGGCCC	1 cut(s)	939
PspPI	GGNCC	4 cut(s)	572, 607, 939, 940
PstI	CTGCAG	1 cut(s)	720
PstNI	CAGNNNCTG	2 cut(s)	281, 563
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	121, 160, 474
RsaNI	GTAC	3 cut(s)	120, 159, 473
RseI	CAYNNNNRTG	1 cut(s)	1014
SaqAI	TTAA	2 cut(s)	27, 414
Sau3AI	GATC	3 cut(s)	592, 934, 1006
Sau96I	GGNCC	4 cut(s)	572, 607, 939, 940
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	14, 542
SduI	GDGCHC	2 cut(s)	133, 943
SfaNI	GCATC	1 cut(s)	311
SfcI	CTRYAG	1 cut(s)	716
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	1 cut(s)	1014
SmlI	CTYRAG	2 cut(s)	26, 731
SmoI	CTYRAG	2 cut(s)	26, 731
SphI	GCATGC	1 cut(s)	969
Sse9I	AATT	6 cut(s)	325, 453, 643, 711, 848, 1019
SsiI	CCGC	5 cut(s)	185, 537, 587, 860, 989
SspMI	CTAG	7 cut(s)	44, 105, 156, 165, 353, 615, 944
StyD4I	CCNGG	2 cut(s)	12, 540
TaaI	ACNGT	5 cut(s)	225, 388, 665, 672, 883
TaiI	ACGT	2 cut(s)	406, 916
TasI	AATT	6 cut(s)	325, 453, 643, 711, 848, 1019
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	3 cut(s)	188, 863, 992
TfiI	GAWTC	2 cut(s)	269, 349
Tru1I	TTAA	2 cut(s)	27, 414
Tru9I	TTAA	2 cut(s)	27, 414
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	3 cut(s)	225, 877, 883
TseI	GCWGC	9 cut(s)	188, 248, 299, 407, 482, 554, 557, 718, 763
Tsp45I	GTSAC	3 cut(s)	225, 877, 883
TspDTI	ATGAA	1 cut(s)	1032
TspRI	CASTG	1 cut(s)	271
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	3 cut(s)	453, 711, 1019
XbaI	TCTAGA	2 cut(s)	43, 352
XceI	RCATGY	2 cut(s)	969, 1015
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	957
XspI	CTAG	7 cut(s)	44, 105, 156, 165, 353, 615, 944
ZrmI	AGTACT	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.