RchiOBHm_Chr2g0162901

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010664
Physical Location & Seq
Reverse (-)
78576537 .. 78582132
5596 bp
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UTR
Exon/CDS
Intron
PRQ53112

Sequence Viewer

Length: 1176 bp
ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACCAACTTCGAGATCGAAGTGGAACCCCAGCAGTTGGTTGCGGATGTCAAGCAAATTATAGAGACGGCACAGGGTGCAGATGTGTACCCTGCCTCAAAACAGATGCTTATTCACCAGGGGAAAGTTCTTAAGGACGCCACGACTCTAGAAGAAAATCAAGTTGCTGAAAACAGCTTTATTGTGATAATGTTGAGCAAGGCTTCACCTAGTGGAAGCTCCAGTACGCAAGGTGCCCCCAAAAGTCAGGCTCAACCTGCTAGTACTCCTAGCACGACGACAACACCAGCGGCAGCTCCGGCTCCAGTTCCGGCTCCTGCACCTGCCCCAGTTGTGGCACAGTCACAACCTGTTGTTGAAACTGCTGCTGTTGTAGCTCCCACTGATTCTTCAGTAACTGATGTGTATGGGCAAGCTGCATCAAATCTTGTTGCAGGAAATAATTTAGAAGTTATCGTTCAACAGATTCTAGATATGGGTGGAGGAAGTTGGGATAGGGATACCGTTCTTCGTGCTTTACGTGCTGCATTTAACAACCCTGAAAGGGCTGTTGAATATCTTTATTCCGGAATTCCCGAACAAGCTGAAGTACCTCCAGCTGCCCAAGTTCCTGTTGGTGAACAGGCAGTAAATCCTCCAGCAATAAATCCTCCCGCCCAGGCTCCACAAGCAGCAGCGCCTGCTGGTGGTCCAAATGCAAACCCGCTGGATCTGTTTCCACAGGGCCTTCCTAGTGTTGGTGCAAATGCCGGAGCAGGCAATTTGGATTTTCTGCGAAACAGTCCACAGTTTCAAGCTTTGAGAACTATGGTGCAAGCAAACCCTCAAATTCTGCAGCCTATGCTCCTTGAGTTGGGGAAGCAAAATCCACATCTAATGCAGCTCATTCAAGCACATCAAGCTGACTTCTTACGCTTGATAAATGAGCCTGTTGAGGGGGGTGGCGAAGGGAACCTTTTGGGTCAATTGGGTTCAGCGGCAATGCCACAGGCTGTGACTGTCACCCCAGAGGAGCGAGAGGCCATTGAACGCCTTGAAGCTATGGGTTTTGATCGGGCCCTAGTATTGGAGGTATACTTTGCATGCAATAAGAATGAGGAGCTGGCGGCGAACTATCTTTTGGATCACATGCATGAATTTGAGGAATGA

Protein Analysis

391

Amino Acids

41.26

Weight (kDa)

4.57

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 3.2e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 6.5e-17 Ubiquitin family
UBA PF00627 160 - 196 2e-10 UBA/TS-N domain
XPC-binding PF09280 264 - 319 2.2e-22 XPC-binding domain
UBA PF00627 347 - 382 8.6e-12 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 358
Acc36I ACCTGC 2 cut(s) 292, 358
AccB1I GGYRCC 2 cut(s) 29, 260
AccB7I CCANNNNNTGG 1 cut(s) 64
AccI GTMKAC 1 cut(s) 1101
AccIII TCCGGA 1 cut(s) 593
AciI CCGC 6 cut(s) 71, 317, 681, 731, 1004, 1133
AclWI GGATC 2 cut(s) 744, 1158
AcsI RAATTY 3 cut(s) 597, 855, 1163
AcuI CTGAAG 2 cut(s) 402, 633
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 2 cut(s) 104, 239
AfaI GTAC 4 cut(s) 116, 253, 292, 618
AfiI CCNNNNNNNGG 8 cut(s) 64, 361, 571, 713, 764, 880, 962, 1093
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 8 cut(s) 25, 386, 488, 581, 821, 917, 1055, 1064
AjnI CCWGG 2 cut(s) 144, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 1130, 1162
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 744, 1158
AlwNI CAGNNNCTG 2 cut(s) 425, 707
Aor13HI TCCGGA 1 cut(s) 593
AoxI GGCC 3 cut(s) 751, 1047, 1083
ApaI GGGCCC 1 cut(s) 1087
ApeKI GCWGC 9 cut(s) 320, 392, 443, 551, 626, 698, 701, 862, 907
ApoI RAATTY 3 cut(s) 597, 855, 1163
AspLEI GCGC 1 cut(s) 706
AspS9I GGNCC 4 cut(s) 716, 751, 1083, 1084
AsuHPI GGTGA 4 cut(s) 134, 225, 656, 1021
AvaII GGWCC 1 cut(s) 716
BaeGI GKGCMC 2 cut(s) 265, 1087
BanI GGYRCC 2 cut(s) 29, 260
BanII GRGCYC 1 cut(s) 1087
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
BbvI GCAGC 9 cut(s) 332, 379, 430, 538, 613, 710, 713, 874, 919
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 146, 686
BciVI GTATCC 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 7 cut(s) 176, 237, 288, 297, 497, 759, 1088
BfmI CTRYAG 1 cut(s) 860
BfoI RGCGCY 1 cut(s) 707
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 2 cut(s) 292, 358
BfuI GTATCC 1 cut(s) 520
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 146, 686
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 4 cut(s) 716, 751, 1083, 1084
BmiI GGNNCC 8 cut(s) 31, 54, 262, 330, 342, 690, 980, 1085
BmrFI CCNGG 2 cut(s) 146, 686
BmrI ACTGGG 1 cut(s) 350
BmsI GCATC 2 cut(s) 123, 455
BmuI ACTGGG 1 cut(s) 350
BpmI CTGGAG 4 cut(s) 232, 315, 606, 648
BpuEI CTTGAG 1 cut(s) 896
BsaAI YACGTR 1 cut(s) 548
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 145, 684
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 361, 571, 713, 764, 880, 962, 1093
Bse1I ACTGG 3 cut(s) 249, 332, 356
Bse3DI GCAATG 1 cut(s) 1014
BseAI TCCGGA 1 cut(s) 593
BseBI CCWGG 2 cut(s) 146, 686
BseDI CCNNGG 2 cut(s) 145, 684
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 8 cut(s) 64, 361, 571, 713, 764, 880, 962, 1093
BseMI GCAATG 1 cut(s) 1014
BseNI ACTGG 3 cut(s) 249, 332, 356
BseRI GAGGAG 2 cut(s) 1052, 1139
BseSI GKGCMC 2 cut(s) 265, 1087
BseXI GCAGC 9 cut(s) 332, 379, 430, 538, 613, 710, 713, 874, 919
BseYI CCCAGC 1 cut(s) 57
BsgI GTGCAG 2 cut(s) 126, 330
BshFI GGCC 3 cut(s) 753, 1049, 1085
BshNI GGYRCC 2 cut(s) 29, 260
BsiSI CCGG 4 cut(s) 326, 338, 594, 777
BslI CCNNNNNNNGG 8 cut(s) 64, 361, 571, 713, 764, 880, 962, 1093
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 3 cut(s) 753, 1049, 1085
Bsp120I GGGCCC 1 cut(s) 1083
Bsp1286I GDGCHC 2 cut(s) 265, 1087
Bsp13I TCCGGA 1 cut(s) 593
Bsp143I GATC 4 cut(s) 42, 736, 1078, 1150
BspACI CCGC 6 cut(s) 71, 317, 681, 731, 1004, 1133
BspANI GGCC 3 cut(s) 753, 1049, 1085
BspEI TCCGGA 1 cut(s) 593
BspLI GGNNCC 8 cut(s) 31, 54, 262, 330, 342, 690, 980, 1085
BspMAI CTGCAG 1 cut(s) 864
BspMI ACCTGC 2 cut(s) 292, 358
BspPI GGATC 2 cut(s) 744, 1158
BspT107I GGYRCC 2 cut(s) 29, 260
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 1014
BsrI ACTGG 3 cut(s) 249, 332, 356
BssECI CCNNGG 2 cut(s) 145, 684
BssMI GATC 4 cut(s) 42, 736, 1078, 1150
BssNAI GTATAC 1 cut(s) 1102
BssNI GRCGYC 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 1102
Bst2UI CCWGG 2 cut(s) 146, 686
Bst4CI ACNGT 5 cut(s) 369, 532, 809, 816, 1027
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 3 cut(s) 104, 707, 868
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 6 cut(s) 441, 708, 784, 843, 1111, 1131
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 707
BstHHI GCGC 1 cut(s) 706
BstKTI GATC 4 cut(s) 45, 739, 1081, 1153
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 42, 736, 1078, 1150
BstMWI GCNNNNNNNGC 9 cut(s) 104, 284, 326, 401, 548, 695, 707, 868, 926
BstNI CCWGG 2 cut(s) 146, 686
BstNSI RCATGY 2 cut(s) 1113, 1159
BstSCI CCNGG 2 cut(s) 144, 684
BstSFI CTRYAG 1 cut(s) 860
BstSLI GKGCMC 2 cut(s) 265, 1087
BstV1I GCAGC 9 cut(s) 332, 379, 430, 538, 613, 710, 713, 874, 919
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BstZ17I GTATAC 1 cut(s) 1102
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 3 cut(s) 753, 1049, 1085
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 408
BveI ACCTGC 2 cut(s) 292, 358
Cac8I GCNNGC 6 cut(s) 441, 708, 784, 843, 1111, 1131
CaiI CAGNNNCTG 2 cut(s) 425, 707
CfoI GCGC 1 cut(s) 706
Cfr13I GGNCC 4 cut(s) 716, 751, 1083, 1084
CseI GACGC 1 cut(s) 173
Csp6I GTAC 4 cut(s) 115, 252, 291, 617
CviAII CATG 3 cut(s) 1110, 1156, 1160
CviQI GTAC 4 cut(s) 115, 252, 291, 617
DpnI GATC 4 cut(s) 44, 738, 1080, 1152
DpnII GATC 4 cut(s) 42, 736, 1078, 1150
DraIII CACNNNGTG 2 cut(s) 104, 239
Eco24I GRGCYC 1 cut(s) 1087
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 2 cut(s) 402, 633
EcoO109I RGGNCCY 2 cut(s) 751, 1084
EcoRI GAATTC 1 cut(s) 597
EcoRII CCWGG 2 cut(s) 144, 684
EcoT22I ATGCAT 1 cut(s) 1161
EcoT38I GRGCYC 1 cut(s) 1087
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 3 cut(s) 1113, 1159, 1163
FalI AAGNNNNNCTT 2 cut(s) 966, 998
FatI CATG 3 cut(s) 1109, 1155, 1159
FauI CCCGC 2 cut(s) 688, 738
FblI GTMKAC 1 cut(s) 1101
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 1087
FspBI CTAG 7 cut(s) 176, 237, 288, 297, 497, 759, 1088
GlaI GCGC 1 cut(s) 705
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 4 cut(s) 232, 315, 606, 648
HaeII RGCGCY 1 cut(s) 707
HaeIII GGCC 3 cut(s) 753, 1049, 1085
HapII CCGG 4 cut(s) 326, 338, 594, 777
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 706
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 1113, 1159, 1163
Hin6I GCGC 1 cut(s) 704
HinP1I GCGC 1 cut(s) 704
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 3 cut(s) 172, 413, 493
HpaII CCGG 4 cut(s) 326, 338, 594, 777
HphI GGTGA 4 cut(s) 134, 225, 656, 1021
Hpy166II GTNNAC 4 cut(s) 115, 647, 812, 1102
Hpy188III TCNNGA 6 cut(s) 16, 40, 176, 497, 594, 602
Hpy8I GTNNAC 4 cut(s) 115, 647, 812, 1102
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 764, 968
HpyCH4III ACNGT 5 cut(s) 369, 532, 809, 816, 1027
HpyCH4IV ACGT 1 cut(s) 547
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 284, 326, 401, 548, 695, 707, 868, 926
HpySE526I ACGT 1 cut(s) 547
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 1113, 1159, 1163
HspAI GCGC 1 cut(s) 704
Kpn2I TCCGGA 1 cut(s) 593
Kzo9I GATC 4 cut(s) 42, 736, 1078, 1150
Lsp1109I GCAGC 9 cut(s) 332, 379, 430, 538, 613, 710, 713, 874, 919
LweI GCATC 2 cut(s) 123, 455
MaeI CTAG 7 cut(s) 176, 237, 288, 297, 497, 759, 1088
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 4 cut(s) 369, 421, 1021, 1027
MalI GATC 4 cut(s) 44, 738, 1080, 1152
MboI GATC 4 cut(s) 42, 736, 1078, 1150
MboII GAAGA 3 cut(s) 191, 408, 527
MfeI CAATTG 1 cut(s) 992
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 2 cut(s) 265, 1087
MluCI AATT 7 cut(s) 84, 469, 597, 787, 855, 992, 1163
MlyI GAGTC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 1161
MroI TCCGGA 1 cut(s) 593
MseI TTAA 2 cut(s) 159, 558
MslI CAYNNNNRTG 1 cut(s) 1158
MspA1I CMGCKG 4 cut(s) 317, 626, 733, 1004
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 4 cut(s) 326, 338, 594, 777
MspR9I CCNGG 2 cut(s) 146, 686
MunI CAATTG 1 cut(s) 992
MvaI CCWGG 2 cut(s) 146, 686
MwoI GCNNNNNNNGC 9 cut(s) 104, 284, 326, 401, 548, 695, 707, 868, 926
NdeII GATC 4 cut(s) 42, 736, 1078, 1150
NlaIII CATG 3 cut(s) 1113, 1159, 1163
NlaIV GGNNCC 8 cut(s) 31, 54, 262, 330, 342, 690, 980, 1085
NmuCI GTSAC 3 cut(s) 369, 1021, 1027
NsiI ATGCAT 1 cut(s) 1161
NspI RCATGY 2 cut(s) 1113, 1159
PaeI GCATGC 1 cut(s) 1113
PaqCI CACCTGC 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PfeI GAWTC 2 cut(s) 413, 493
PflMI CCANNNNNTGG 1 cut(s) 64
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 548
Psp6I CCWGG 2 cut(s) 144, 684
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 2 cut(s) 144, 684
PspN4I GGNNCC 8 cut(s) 31, 54, 262, 330, 342, 690, 980, 1085
PspOMI GGGCCC 1 cut(s) 1083
PspPI GGNCC 4 cut(s) 716, 751, 1083, 1084
PstI CTGCAG 1 cut(s) 864
PstNI CAGNNNCTG 2 cut(s) 425, 707
PsuI RGATCY 1 cut(s) 736
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 4 cut(s) 116, 253, 292, 618
RsaNI GTAC 4 cut(s) 115, 252, 291, 617
RseI CAYNNNNRTG 1 cut(s) 1158
SaqAI TTAA 2 cut(s) 159, 558
Sau3AI GATC 4 cut(s) 42, 736, 1078, 1150
Sau96I GGNCC 4 cut(s) 716, 751, 1083, 1084
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 146, 686
SduI GDGCHC 2 cut(s) 265, 1087
SfaNI GCATC 2 cut(s) 123, 455
SfcI CTRYAG 1 cut(s) 860
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 1158
SmlI CTYRAG 2 cut(s) 158, 875
SmoI CTYRAG 2 cut(s) 158, 875
SphI GCATGC 1 cut(s) 1113
Sse9I AATT 7 cut(s) 84, 469, 597, 787, 855, 992, 1163
SsiI CCGC 6 cut(s) 71, 317, 681, 731, 1004, 1133
SspMI CTAG 7 cut(s) 176, 237, 288, 297, 497, 759, 1088
StyD4I CCNGG 2 cut(s) 144, 684
TaaI ACNGT 5 cut(s) 369, 532, 809, 816, 1027
TaiI ACGT 1 cut(s) 550
TaqI TCGA 2 cut(s) 39, 45
TasI AATT 7 cut(s) 84, 469, 597, 787, 855, 992, 1163
TatI WGTACW 1 cut(s) 290
TauI GCSGC 3 cut(s) 320, 1007, 1136
TfiI GAWTC 2 cut(s) 413, 493
Tru1I TTAA 2 cut(s) 159, 558
Tru9I TTAA 2 cut(s) 159, 558
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 3 cut(s) 369, 1021, 1027
TseI GCWGC 9 cut(s) 320, 392, 443, 551, 626, 698, 701, 862, 907
Tsp45I GTSAC 3 cut(s) 369, 1021, 1027
TspDTI ATGAA 2 cut(s) 17, 1176
TspRI CASTG 1 cut(s) 415
Van91I CCANNNNNTGG 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 3 cut(s) 597, 855, 1163
XbaI TCTAGA 2 cut(s) 175, 496
XceI RCATGY 2 cut(s) 1113, 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 1101
XspI CTAG 7 cut(s) 176, 237, 288, 297, 497, 759, 1088
ZrmI AGTACT 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.