FvH4_6g45190

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010664
Physical Location & Seq
Reverse (-)
34721689 .. 34726757
5069 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45190.t3

Sequence Viewer

Length: 1173 bp
ATGAAGGTTTTCGTCAAGACCTTGAAAGGCACCAACTTCGAGATCGAAGTCGAACCCAAGCAGTTGGTGGCCGATGTCAAGCAAGTTATAGAGAAGGCACAGGGTGCGGATGTGTACCCTGCCTCAAAACAGATGCTTATTCATCAGGGGAAAGTGCTTAAGGATGCCACAACTCTAGAGGAAAATCAAGTTGCTGAAAACAGCTTTATTGTGATAATGTTGAGCAAGGCTTCACCAAGTGGAAGCTCCAGTGCGCAAAGTGCCCCCAAAAGTCAGGCTCAACCGGCCGCTACTCCTAGCTCGACGACAACACCAACAGCAGCTCCAGCTCCAACCCCAGTTGTGGCACCGCCACAACCTGCCGCTGAAACTGCTGCTGTTGTAGCTCCCACTGATTCTTCAGTAACTGATGTGTATGGGCAAGCTGCATCAAATCTTGTTGCAGGAAATAATTTAGAAGTTATCGTTCAACAGATTCTAGATATGGGTGGAGGAAGTTGGGATAGGGACACAGTTCTTCGTGCTCTACGTGCTGCATTTAACAACCCTGAAAGGGCTGTTGAATATCTATATTCGGGAATTCCCGAGCAAGCTGAAGTACCTCCAGCTGCCCAAGTTCCTGTTGGTGAACAGGCAGTAAATCCTTTGGCAGGAAATCCTCCGGCAATAAATCCCCCTGCCCAGGCTCCACAAGCAGCAGCGCCTGCTGGTGGTCCCAATGCAAACCCACTGGATCTGTTTCCACAGGGCCTCCCTAGTGTTGGTGCAAATGCCGGAGCAGGCAATTTGGATTTTCTGCGAAACAGTCCACAGTTTCAAGCTTTGAGAACTATGGTGCAAGCAAACCCTCAAATTCTGCAGCCTATGCTCCTTGAGTTGGGGAAGCAAAATCCACATCTAATGCAGCTCATTCAAGCACATCAAGCTGACTTCTTACGCTTGATAAATGAGCCTGTTGAGGGGGGTGGTGAAGGGAACCTTTTGGGTCAGTTGGGTTCAGCGGCAATGCCACAGGCTGTGACCGTCACCCCGGAGGAGCGAGAGGCAATTGAACGTCTTGAAGCTATGGGTTTTGAACGGGCTCTAGTATTGGAGGTATACTTCGCTTGCAATAAGAATGAGGAGCTGGCGGCGAACTATCTTTTGGATCACATGCATGAATTCGAGGAATGA

Protein Analysis

391

Amino Acids

41.16

Weight (kDa)

4.67

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 1.1e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 1.1e-17 Ubiquitin family
UBA PF00627 154 - 190 1.6e-10 UBA/TS-N domain
XPC-binding PF09280 263 - 318 1.7e-22 XPC-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 367
AccB1I GGYRCC 2 cut(s) 29, 346
AccI GTMKAC 1 cut(s) 1098
AciI CCGC 6 cut(s) 107, 288, 350, 363, 1001, 1130
AclWI GGATC 2 cut(s) 741, 1155
AcoI YGGCCR 2 cut(s) 69, 285
AcsI RAATTY 3 cut(s) 579, 852, 1160
AcuI CTGAAG 2 cut(s) 384, 615
AdeI CACNNNGTG 2 cut(s) 104, 239
AfaI GTAC 2 cut(s) 116, 600
AfiI CCNNNNNNNGG 8 cut(s) 343, 553, 650, 682, 710, 761, 877, 959
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 8 cut(s) 25, 470, 563, 818, 914, 1052, 1061, 1076
AjnI CCWGG 1 cut(s) 681
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
Alw21I GWGCWC 1 cut(s) 526
AlwI GGATC 2 cut(s) 741, 1155
AlwNI CAGNNNCTG 2 cut(s) 407, 704
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 3 cut(s) 69, 285, 748
ApeKI GCWGC 9 cut(s) 320, 374, 425, 533, 608, 695, 698, 859, 904
ApoI RAATTY 3 cut(s) 579, 852, 1160
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 256, 703
AspS9I GGNCC 2 cut(s) 713, 748
AsuC2I CCSGG 1 cut(s) 1031
AsuHPI GGTGA 4 cut(s) 225, 638, 980, 1018
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 265
BanI GGYRCC 2 cut(s) 29, 346
BanII GRGCYC 1 cut(s) 1084
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 9 cut(s) 332, 361, 412, 520, 595, 707, 710, 871, 916
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 683
BcnI CCSGG 1 cut(s) 1031
BfaI CTAG 5 cut(s) 176, 297, 479, 756, 1085
BfmI CTRYAG 1 cut(s) 857
BfoI RGCGCY 1 cut(s) 704
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 367
Bme1390I CCNGG 2 cut(s) 683, 1031
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 713, 748
BmiI GGNNCC 5 cut(s) 31, 348, 687, 715, 977
BmrFI CCNGG 2 cut(s) 683, 1031
BmrI ACTGGG 1 cut(s) 332
BmsI GCATC 3 cut(s) 123, 154, 437
BmuI ACTGGG 1 cut(s) 332
BpmI CTGGAG 3 cut(s) 232, 309, 588
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 1 cut(s) 1031
BsaAI YACGTR 1 cut(s) 530
BsaJI CCNNGG 2 cut(s) 681, 1029
BsaXI ACNNNNNCTCC 4 cut(s) 307, 337, 735, 765
Bsc4I CCNNNNNNNGG 8 cut(s) 343, 553, 650, 682, 710, 761, 877, 959
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 3 cut(s) 249, 338, 735
Bse3DI GCAATG 1 cut(s) 1011
BseBI CCWGG 1 cut(s) 683
BseDI CCNNGG 2 cut(s) 681, 1029
BseGI GGATG 2 cut(s) 115, 169
BseLI CCNNNNNNNGG 8 cut(s) 343, 553, 650, 682, 710, 761, 877, 959
BseMI GCAATG 1 cut(s) 1011
BseNI ACTGG 3 cut(s) 249, 338, 735
BseRI GAGGAG 2 cut(s) 1049, 1136
BseSI GKGCMC 1 cut(s) 265
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 9 cut(s) 332, 361, 412, 520, 595, 707, 710, 871, 916
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 71, 287, 750
BshNI GGYRCC 2 cut(s) 29, 346
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 526
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 4 cut(s) 284, 662, 774, 1031
BslFI GGGAC 2 cut(s) 521, 699
BslI CCNNNNNNNGG 8 cut(s) 343, 553, 650, 682, 710, 761, 877, 959
BsmFI GGGAC 2 cut(s) 521, 699
BsnI GGCC 3 cut(s) 71, 287, 750
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 3 cut(s) 265, 526, 1084
Bsp143I GATC 3 cut(s) 42, 733, 1147
BspACI CCGC 6 cut(s) 107, 288, 350, 363, 1001, 1130
BspANI GGCC 3 cut(s) 71, 287, 750
BspLI GGNNCC 5 cut(s) 31, 348, 687, 715, 977
BspMAI CTGCAG 1 cut(s) 861
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 2 cut(s) 741, 1155
BspT107I GGYRCC 2 cut(s) 29, 346
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 1011
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 3 cut(s) 249, 338, 735
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 681, 1029
BssMI GATC 3 cut(s) 42, 733, 1147
BssNAI GTATAC 1 cut(s) 1099
Bst1107I GTATAC 1 cut(s) 1099
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 4 cut(s) 514, 806, 813, 1024
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 3 cut(s) 104, 704, 865
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 7 cut(s) 423, 591, 705, 781, 840, 1108, 1128
BstENI CCTNNNNNAGG 1 cut(s) 648
BstF5I GGATG 2 cut(s) 115, 169
BstH2I RGCGCY 1 cut(s) 704
BstHHI GCGC 2 cut(s) 256, 703
BstKTI GATC 3 cut(s) 45, 736, 1150
BstMBI GATC 3 cut(s) 42, 733, 1147
BstMCI CGRYCG 1 cut(s) 288
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 1 cut(s) 1156
BstSCI CCNGG 2 cut(s) 681, 1029
BstSFI CTRYAG 1 cut(s) 857
BstSLI GKGCMC 1 cut(s) 265
BstV1I GCAGC 9 cut(s) 332, 361, 412, 520, 595, 707, 710, 871, 916
BstX2I RGATCY 1 cut(s) 733
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 1 cut(s) 733
BstZ17I GTATAC 1 cut(s) 1099
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 3 cut(s) 71, 287, 750
BtsCI GGATG 2 cut(s) 115, 169
BtsIMutI CAGTG 3 cut(s) 256, 390, 728
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 7 cut(s) 423, 591, 705, 781, 840, 1108, 1128
CaiI CAGNNNCTG 2 cut(s) 407, 704
CfoI GCGC 2 cut(s) 256, 703
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 713, 748
Csp6I GTAC 2 cut(s) 115, 599
CviAII CATG 2 cut(s) 1153, 1157
CviQI GTAC 2 cut(s) 115, 599
DpnI GATC 3 cut(s) 44, 735, 1149
DpnII GATC 3 cut(s) 42, 733, 1147
DraIII CACNNNGTG 2 cut(s) 104, 239
EaeI YGGCCR 2 cut(s) 69, 285
EagI CGGCCG 1 cut(s) 285
EclXI CGGCCG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 1084
Eco47I GGWCC 1 cut(s) 713
Eco52I CGGCCG 1 cut(s) 285
Eco57I CTGAAG 2 cut(s) 384, 615
Eco88I CYCGRG 1 cut(s) 584
EcoNI CCTNNNNNAGG 1 cut(s) 648
EcoO109I RGGNCCY 1 cut(s) 748
EcoRI GAATTC 2 cut(s) 579, 1160
EcoRII CCWGG 1 cut(s) 681
EcoT22I ATGCAT 1 cut(s) 1158
EcoT38I GRGCYC 1 cut(s) 1084
FaeI CATG 2 cut(s) 1156, 1160
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 2 cut(s) 521, 699
FatI CATG 2 cut(s) 1152, 1156
FblI GTMKAC 1 cut(s) 1098
FokI GGATG 2 cut(s) 122, 176
FriOI GRGCYC 1 cut(s) 1084
FspBI CTAG 5 cut(s) 176, 297, 479, 756, 1085
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 2 cut(s) 255, 702
GsuI CTGGAG 3 cut(s) 232, 309, 588
HaeII RGCGCY 1 cut(s) 704
HaeIII GGCC 3 cut(s) 71, 287, 750
HapII CCGG 4 cut(s) 284, 662, 774, 1031
HhaI GCGC 2 cut(s) 256, 703
Hin1II CATG 2 cut(s) 1156, 1160
Hin6I GCGC 2 cut(s) 254, 701
HinP1I GCGC 2 cut(s) 254, 701
HindIII AAGCTT 1 cut(s) 819
HinfI GANTC 2 cut(s) 395, 475
HpaII CCGG 4 cut(s) 284, 662, 774, 1031
HphI GGTGA 4 cut(s) 225, 638, 980, 1018
Hpy166II GTNNAC 4 cut(s) 115, 629, 809, 1099
Hpy188III TCNNGA 7 cut(s) 16, 40, 176, 479, 576, 584, 1058
Hpy8I GTNNAC 4 cut(s) 115, 629, 809, 1099
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 88, 965
HpyCH4III ACNGT 4 cut(s) 514, 806, 813, 1024
HpyCH4IV ACGT 2 cut(s) 529, 1054
HpySE526I ACGT 2 cut(s) 529, 1054
Hsp92II CATG 2 cut(s) 1156, 1160
HspAI GCGC 2 cut(s) 254, 701
Kzo9I GATC 3 cut(s) 42, 733, 1147
LmnI GCTCC 9 cut(s) 251, 328, 334, 391, 691, 776, 873, 1036, 1123
Lsp1109I GCAGC 9 cut(s) 332, 361, 412, 520, 595, 707, 710, 871, 916
LweI GCATC 3 cut(s) 123, 154, 437
MaeI CTAG 5 cut(s) 176, 297, 479, 756, 1085
MaeII ACGT 2 cut(s) 529, 1054
MaeIII GTNAC 3 cut(s) 403, 1018, 1024
MalI GATC 3 cut(s) 44, 735, 1149
MboI GATC 3 cut(s) 42, 733, 1147
MboII GAAGA 2 cut(s) 390, 509
MfeI CAATTG 1 cut(s) 1047
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 3 cut(s) 265, 526, 1084
MluCI AATT 6 cut(s) 451, 579, 784, 852, 1047, 1160
MmeI TCCRAC 1 cut(s) 356
Mph1103I ATGCAT 1 cut(s) 1158
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 159, 540
MslI CAYNNNNRTG 1 cut(s) 1155
MspA1I CMGCKG 3 cut(s) 365, 608, 1001
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 4 cut(s) 284, 662, 774, 1031
MspR9I CCNGG 2 cut(s) 683, 1031
MunI CAATTG 1 cut(s) 1047
MvaI CCWGG 1 cut(s) 683
NciI CCSGG 1 cut(s) 1031
NdeII GATC 3 cut(s) 42, 733, 1147
NlaIII CATG 2 cut(s) 1156, 1160
NlaIV GGNNCC 5 cut(s) 31, 348, 687, 715, 977
NmuCI GTSAC 2 cut(s) 1018, 1024
NsbI TGCGCA 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 1158
NspI RCATGY 1 cut(s) 1156
PcsI WCGNNNNNNNCGW 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 395, 475
Ppu21I YACGTR 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 681
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 5 cut(s) 31, 348, 687, 715, 977
PspPI GGNCC 2 cut(s) 713, 748
PstI CTGCAG 1 cut(s) 861
PstNI CAGNNNCTG 2 cut(s) 407, 704
PsuI RGATCY 1 cut(s) 733
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 2 cut(s) 116, 600
RsaNI GTAC 2 cut(s) 115, 599
RseI CAYNNNNRTG 1 cut(s) 1155
SaqAI TTAA 2 cut(s) 159, 540
Sau3AI GATC 3 cut(s) 42, 733, 1147
Sau96I GGNCC 2 cut(s) 713, 748
ScrFI CCNGG 2 cut(s) 683, 1031
SduI GDGCHC 3 cut(s) 265, 526, 1084
SfaNI GCATC 3 cut(s) 123, 154, 437
SfcI CTRYAG 1 cut(s) 857
SinI GGWCC 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 1155
SmlI CTYRAG 2 cut(s) 158, 872
SmoI CTYRAG 2 cut(s) 158, 872
Sse9I AATT 6 cut(s) 451, 579, 784, 852, 1047, 1160
SsiI CCGC 6 cut(s) 107, 288, 350, 363, 1001, 1130
SspMI CTAG 5 cut(s) 176, 297, 479, 756, 1085
StyD4I CCNGG 2 cut(s) 681, 1029
TaaI ACNGT 4 cut(s) 514, 806, 813, 1024
TaiI ACGT 2 cut(s) 532, 1057
TaqI TCGA 5 cut(s) 39, 45, 51, 302, 1164
TasI AATT 6 cut(s) 451, 579, 784, 852, 1047, 1160
TauI GCSGC 4 cut(s) 290, 365, 1004, 1133
TfiI GAWTC 2 cut(s) 395, 475
Tru1I TTAA 2 cut(s) 159, 540
Tru9I TTAA 2 cut(s) 159, 540
TscAI CASTG 3 cut(s) 256, 397, 735
TseFI GTSAC 2 cut(s) 1018, 1024
TseI GCWGC 9 cut(s) 320, 374, 425, 533, 608, 695, 698, 859, 904
Tsp45I GTSAC 2 cut(s) 1018, 1024
TspDTI ATGAA 3 cut(s) 17, 131, 1173
TspRI CASTG 3 cut(s) 256, 397, 735
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 713
XagI CCTNNNNNAGG 1 cut(s) 648
XapI RAATTY 3 cut(s) 579, 852, 1160
XbaI TCTAGA 2 cut(s) 175, 478
XceI RCATGY 1 cut(s) 1156
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 620
XmiI GTMKAC 1 cut(s) 1098
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 5 cut(s) 176, 297, 479, 756, 1085
Zsp2I ATGCAT 1 cut(s) 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.