Rw2G046780

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010664
Physical Location & Seq
Reverse (-)
74166168 .. 74172098
5931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046780.1

Sequence Viewer

Length: 1182 bp
ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACCAACTTCGAGATCGAAGTGGAACCCCAGCAGTTGGTTGCGGATGTCAAGCAAATTATAGAGACGGCACAGGGTGCAGATGTGTACCCTGCCTCAAAACAGATGCTTATTCACCAGGGGAAAGTTCTTAAGGACGCCACGACTCTAGAAGAAAATCAAGTTGCTGAAAACAGCTTTATTGTGATAATGTTGAGCAAGGCTTCACCTAGTGGAAGCTCCAGTACGCAAGGTGCCCCCAAAAGTCAGGCTCAACCTGCTAGTACTCCTAGCACGATGACAACACCAGCGGCAGCTCCGGCTCCGGCTCCGGCTCCGGCTCCTGCACCTGCCCCAGTTGTGGCACAGTCACAACCTGTTGTTGAAACTGCTGCTGTTGTAGCTCCCACTGATTCTTCAGTAACTGATGTGTATGGGCAAGCTGCATCAAATCTTGTTGCAGGAAATAATTTAGAAGTTATCGTTCAACAGATTCTAGATATGGGTGGAGGAAGTTGGGATAGGGATACCGTTCTTCGTGCTTTACGTGCTGCATTTAACAACCCTGAAAGGGCTGTTGAATATCTTTATTCTGGAATTCCCGAACAAGCTGAAGTACCTTCAGCTGCCCAAGTTCCTGTTGGTGAACAGGCAGTAAATCCTCCAGCAATAAATCCTCCTGCCCAGGCTCCACAAGCAGCAGCGCCTGCTGGTGGTCCCAATGCAAACCCGCTGGATCTGTTTCCACAGGGCCTTCCTAGTGTTGGTGCAAATGCCGGAGCAGGCAATTTGGATTTTCTGCGAAACAGTCCACAGTTTCAAGCTTTGAGAACTATGGTGCAAGCAAACCCTCAAATTCTGCAGCCTATGCTCCTTGAGTTGGGGAAGCAAAATCCACATCTAATGCAGCTCATTCAAGCACATCAAGCTGACTTCTTACGCTTGATAAATGAGCCTGTTGAGGGGGGTGGCGAAGGGAACCTTTTGGGTCAATTGGGTTCAGCGGCAATGCCACAGGCTGTGACTGTCACCCCAGAGGAGCGAGAGGCCATTGAACGTCTTGAAGCTATGGGTTTTGATCGGGCCCTAGTATTGGAGGTATACTTTGCATGCAATAAGAATGAGGAGCTGGCGGCGAACTATCTTTTGGATCACATGCATGAATTTGAGGAATGA

Protein Analysis

393

Amino Acids

41.42

Weight (kDa)

4.57

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 3.2e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 6.6e-17 Ubiquitin family
UBA PF00627 162 - 198 2e-10 UBA/TS-N domain
XPC-binding PF09280 266 - 321 2.2e-22 XPC-binding domain
UBA PF00627 349 - 384 8.6e-12 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 2 cut(s) 292, 364
AccB1I GGYRCC 2 cut(s) 29, 260
AccB7I CCANNNNNTGG 1 cut(s) 64
AccI GTMKAC 1 cut(s) 1107
AciI CCGC 5 cut(s) 71, 317, 737, 1010, 1139
AclWI GGATC 2 cut(s) 750, 1164
AcsI RAATTY 3 cut(s) 603, 861, 1169
AcuI CTGAAG 3 cut(s) 408, 612, 639
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 2 cut(s) 104, 239
AfaI GTAC 4 cut(s) 116, 253, 292, 624
AfiI CCNNNNNNNGG 8 cut(s) 64, 367, 577, 719, 770, 886, 968, 1099
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 8 cut(s) 25, 392, 494, 587, 827, 923, 1061, 1070
AjnI CCWGG 2 cut(s) 144, 690
AjuI GAANNNNNNNTTGG 2 cut(s) 1136, 1168
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 750, 1164
AlwNI CAGNNNCTG 2 cut(s) 431, 713
AoxI GGCC 3 cut(s) 757, 1053, 1089
ApaI GGGCCC 1 cut(s) 1093
ApeKI GCWGC 9 cut(s) 320, 398, 449, 557, 632, 704, 707, 868, 913
ApoI RAATTY 3 cut(s) 603, 861, 1169
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 4 cut(s) 722, 757, 1089, 1090
AsuHPI GGTGA 4 cut(s) 134, 225, 662, 1027
AvaII GGWCC 1 cut(s) 722
BaeGI GKGCMC 2 cut(s) 265, 1093
BanI GGYRCC 2 cut(s) 29, 260
BanII GRGCYC 1 cut(s) 1093
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
BbvI GCAGC 9 cut(s) 332, 385, 436, 544, 619, 716, 719, 880, 925
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 146, 692
BciVI GTATCC 1 cut(s) 526
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 7 cut(s) 176, 237, 288, 297, 503, 765, 1094
BfmI CTRYAG 1 cut(s) 866
BfoI RGCGCY 1 cut(s) 713
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 2 cut(s) 292, 364
BfuI GTATCC 1 cut(s) 526
BmcAI AGTACT 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 146, 692
Bme18I GGWCC 1 cut(s) 722
BmgT120I GGNCC 4 cut(s) 722, 757, 1089, 1090
BmrFI CCNGG 2 cut(s) 146, 692
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 2 cut(s) 123, 461
BmuI ACTGGG 1 cut(s) 356
BpmI CTGGAG 2 cut(s) 232, 654
BpuEI CTTGAG 1 cut(s) 902
BsaAI YACGTR 1 cut(s) 554
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 145, 690
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 367, 577, 719, 770, 886, 968, 1099
Bse1I ACTGG 2 cut(s) 249, 362
Bse3DI GCAATG 1 cut(s) 1020
BseBI CCWGG 2 cut(s) 146, 692
BseDI CCNNGG 2 cut(s) 145, 690
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 8 cut(s) 64, 367, 577, 719, 770, 886, 968, 1099
BseMI GCAATG 1 cut(s) 1020
BseNI ACTGG 2 cut(s) 249, 362
BseRI GAGGAG 2 cut(s) 1058, 1145
BseSI GKGCMC 2 cut(s) 265, 1093
BseXI GCAGC 9 cut(s) 332, 385, 436, 544, 619, 716, 719, 880, 925
BseYI CCCAGC 1 cut(s) 57
BsgI GTGCAG 2 cut(s) 126, 336
BshFI GGCC 3 cut(s) 759, 1055, 1091
BshNI GGYRCC 2 cut(s) 29, 260
BsiSI CCGG 5 cut(s) 326, 332, 338, 344, 783
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 8 cut(s) 64, 367, 577, 719, 770, 886, 968, 1099
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 708
BsnI GGCC 3 cut(s) 759, 1055, 1091
Bsp120I GGGCCC 1 cut(s) 1089
Bsp1286I GDGCHC 2 cut(s) 265, 1093
Bsp143I GATC 4 cut(s) 42, 742, 1084, 1156
BspACI CCGC 5 cut(s) 71, 317, 737, 1010, 1139
BspANI GGCC 3 cut(s) 759, 1055, 1091
BspMAI CTGCAG 1 cut(s) 870
BspMI ACCTGC 2 cut(s) 292, 364
BspPI GGATC 2 cut(s) 750, 1164
BspT107I GGYRCC 2 cut(s) 29, 260
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 1020
BsrI ACTGG 2 cut(s) 249, 362
BssECI CCNNGG 2 cut(s) 145, 690
BssMI GATC 4 cut(s) 42, 742, 1084, 1156
BssNAI GTATAC 1 cut(s) 1108
BssNI GRCGYC 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 1108
Bst2UI CCWGG 2 cut(s) 146, 692
Bst4CI ACNGT 5 cut(s) 375, 538, 815, 822, 1033
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 3 cut(s) 104, 713, 874
BstBAI YACGTR 1 cut(s) 554
BstC8I GCNNGC 6 cut(s) 447, 714, 790, 849, 1117, 1137
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 713
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 4 cut(s) 45, 745, 1087, 1159
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 42, 742, 1084, 1156
BstMWI GCNNNNNNNGC 9 cut(s) 104, 284, 326, 407, 554, 701, 713, 874, 932
BstNI CCWGG 2 cut(s) 146, 692
BstNSI RCATGY 2 cut(s) 1119, 1165
BstSCI CCNGG 2 cut(s) 144, 690
BstSFI CTRYAG 1 cut(s) 866
BstSLI GKGCMC 2 cut(s) 265, 1093
BstV1I GCAGC 9 cut(s) 332, 385, 436, 544, 619, 716, 719, 880, 925
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BstZ17I GTATAC 1 cut(s) 1108
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 3 cut(s) 759, 1055, 1091
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 414
BveI ACCTGC 2 cut(s) 292, 364
Cac8I GCNNGC 6 cut(s) 447, 714, 790, 849, 1117, 1137
CaiI CAGNNNCTG 2 cut(s) 431, 713
CfoI GCGC 1 cut(s) 712
Cfr13I GGNCC 4 cut(s) 722, 757, 1089, 1090
CseI GACGC 1 cut(s) 173
Csp6I GTAC 4 cut(s) 115, 252, 291, 623
CviAII CATG 3 cut(s) 1116, 1162, 1166
CviQI GTAC 4 cut(s) 115, 252, 291, 623
DpnI GATC 4 cut(s) 44, 744, 1086, 1158
DpnII GATC 4 cut(s) 42, 742, 1084, 1156
DraIII CACNNNGTG 2 cut(s) 104, 239
Eco24I GRGCYC 1 cut(s) 1093
Eco47I GGWCC 1 cut(s) 722
Eco57I CTGAAG 3 cut(s) 408, 612, 639
EcoO109I RGGNCCY 2 cut(s) 757, 1090
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 144, 690
EcoT22I ATGCAT 1 cut(s) 1167
EcoT38I GRGCYC 1 cut(s) 1093
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 3 cut(s) 1119, 1165, 1169
FalI AAGNNNNNCTT 2 cut(s) 972, 1004
FaqI GGGAC 1 cut(s) 708
FatI CATG 3 cut(s) 1115, 1161, 1165
FauI CCCGC 1 cut(s) 744
FblI GTMKAC 1 cut(s) 1107
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 1093
FspBI CTAG 7 cut(s) 176, 237, 288, 297, 503, 765, 1094
GlaI GCGC 1 cut(s) 711
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 2 cut(s) 232, 654
HaeII RGCGCY 1 cut(s) 713
HaeIII GGCC 3 cut(s) 759, 1055, 1091
HapII CCGG 5 cut(s) 326, 332, 338, 344, 783
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 712
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 1119, 1165, 1169
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HindIII AAGCTT 1 cut(s) 828
HinfI GANTC 3 cut(s) 172, 419, 499
HpaII CCGG 5 cut(s) 326, 332, 338, 344, 783
HphI GGTGA 4 cut(s) 134, 225, 662, 1027
Hpy166II GTNNAC 4 cut(s) 115, 653, 818, 1108
Hpy188III TCNNGA 7 cut(s) 16, 40, 176, 503, 600, 608, 1067
Hpy8I GTNNAC 4 cut(s) 115, 653, 818, 1108
HpyAV CCTTC 3 cut(s) 636, 770, 974
HpyCH4III ACNGT 5 cut(s) 375, 538, 815, 822, 1033
HpyCH4IV ACGT 2 cut(s) 553, 1063
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 284, 326, 407, 554, 701, 713, 874, 932
HpySE526I ACGT 2 cut(s) 553, 1063
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 1119, 1165, 1169
HspAI GCGC 1 cut(s) 710
Kzo9I GATC 4 cut(s) 42, 742, 1084, 1156
Lsp1109I GCAGC 9 cut(s) 332, 385, 436, 544, 619, 716, 719, 880, 925
LweI GCATC 2 cut(s) 123, 461
MaeI CTAG 7 cut(s) 176, 237, 288, 297, 503, 765, 1094
MaeII ACGT 2 cut(s) 553, 1063
MaeIII GTNAC 4 cut(s) 375, 427, 1027, 1033
MalI GATC 4 cut(s) 44, 744, 1086, 1158
MboI GATC 4 cut(s) 42, 742, 1084, 1156
MboII GAAGA 3 cut(s) 191, 414, 533
MfeI CAATTG 1 cut(s) 998
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 2 cut(s) 265, 1093
MluCI AATT 7 cut(s) 84, 475, 603, 793, 861, 998, 1169
MlyI GAGTC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 1167
MseI TTAA 2 cut(s) 159, 564
MslI CAYNNNNRTG 1 cut(s) 1164
MspA1I CMGCKG 4 cut(s) 317, 632, 739, 1010
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 5 cut(s) 326, 332, 338, 344, 783
MspR9I CCNGG 2 cut(s) 146, 692
MunI CAATTG 1 cut(s) 998
MvaI CCWGG 2 cut(s) 146, 692
MwoI GCNNNNNNNGC 9 cut(s) 104, 284, 326, 407, 554, 701, 713, 874, 932
NdeII GATC 4 cut(s) 42, 742, 1084, 1156
NlaIII CATG 3 cut(s) 1119, 1165, 1169
NmuCI GTSAC 3 cut(s) 375, 1027, 1033
NsiI ATGCAT 1 cut(s) 1167
NspI RCATGY 2 cut(s) 1119, 1165
PaeI GCATGC 1 cut(s) 1119
PaqCI CACCTGC 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 550
PfeI GAWTC 2 cut(s) 419, 499
PflMI CCANNNNNTGG 1 cut(s) 64
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 144, 690
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 2 cut(s) 144, 690
PspOMI GGGCCC 1 cut(s) 1089
PspPI GGNCC 4 cut(s) 722, 757, 1089, 1090
PstI CTGCAG 1 cut(s) 870
PstNI CAGNNNCTG 2 cut(s) 431, 713
PsuI RGATCY 1 cut(s) 742
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 4 cut(s) 116, 253, 292, 624
RsaNI GTAC 4 cut(s) 115, 252, 291, 623
RseI CAYNNNNRTG 1 cut(s) 1164
SaqAI TTAA 2 cut(s) 159, 564
Sau3AI GATC 4 cut(s) 42, 742, 1084, 1156
Sau96I GGNCC 4 cut(s) 722, 757, 1089, 1090
ScaI AGTACT 1 cut(s) 292
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 146, 692
SduI GDGCHC 2 cut(s) 265, 1093
SfaNI GCATC 2 cut(s) 123, 461
SfcI CTRYAG 1 cut(s) 866
SinI GGWCC 1 cut(s) 722
SmiMI CAYNNNNRTG 1 cut(s) 1164
SmlI CTYRAG 2 cut(s) 158, 881
SmoI CTYRAG 2 cut(s) 158, 881
SphI GCATGC 1 cut(s) 1119
Sse9I AATT 7 cut(s) 84, 475, 603, 793, 861, 998, 1169
SsiI CCGC 5 cut(s) 71, 317, 737, 1010, 1139
SspMI CTAG 7 cut(s) 176, 237, 288, 297, 503, 765, 1094
StyD4I CCNGG 2 cut(s) 144, 690
TaaI ACNGT 5 cut(s) 375, 538, 815, 822, 1033
TaiI ACGT 2 cut(s) 556, 1066
TaqI TCGA 2 cut(s) 39, 45
TasI AATT 7 cut(s) 84, 475, 603, 793, 861, 998, 1169
TatI WGTACW 1 cut(s) 290
TauI GCSGC 3 cut(s) 320, 1013, 1142
TfiI GAWTC 2 cut(s) 419, 499
Tru1I TTAA 2 cut(s) 159, 564
Tru9I TTAA 2 cut(s) 159, 564
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 3 cut(s) 375, 1027, 1033
TseI GCWGC 9 cut(s) 320, 398, 449, 557, 632, 704, 707, 868, 913
Tsp45I GTSAC 3 cut(s) 375, 1027, 1033
TspDTI ATGAA 2 cut(s) 17, 1182
TspRI CASTG 1 cut(s) 421
Van91I CCANNNNNTGG 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 3 cut(s) 603, 861, 1169
XbaI TCTAGA 2 cut(s) 175, 502
XceI RCATGY 2 cut(s) 1119, 1165
XcmI CCANNNNNNNNNTGG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 1107
XspI CTAG 7 cut(s) 176, 237, 288, 297, 503, 765, 1094
ZrmI AGTACT 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.