MD17G1076200.v1.1

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010664
Physical Location & Seq
Reverse (-)
6326047 .. 6330708
4662 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1076200.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGAAGGTTTTTGTCAAGACTTTGAAGGGCACCAACTTCGCGATCGAAGTGAAACCCGAAGAGACGGTTGCTGATGTCAAGACAATTATAGAGACGGCACAGGGTGCAGATGTGTACCCTGCCCCGCAGCAGATGCTTATTCATCAGGGGAAAGTTCTTAAGGATGACACAACTCTAGAAGCAAATAATGTTGCTGAAAATAGTTTTATTGTGATAATGTTAACCAAGCCCAAGGCCTCACCAGCCGGAGCCTCCAGTAAGCAAGGTGCAGCCACAAGTCAGCCCCAACCTGCTAGTACTGCTCCTACCTCGGCAGCACCACCCCCAGCAGCTCCAGCTCCTGCTCCAGCTCCTGCGCCAGCTGTGGTAGAATCGCAGCCTGCCGCCCAAACTGCTGCTGTTGTAGCCCCTACTGATTCAAGATCAGATGTGTATGGCCAAGCTGCATCAAACCTAGTTGCAGGAACTACTTTAGAGTCTACCGTTCAGCAGATTCTAGATATGGGTGGAGGAAGTTGGGATCGGGAAACTGTTATCCGTGCTTTACGGGCTGCTTTTAACAACCCTGAGAGGGCTGTTGAGTATCTATATTCTGGCATTCCTGAGCAAGCTGAAATCCCACCAGCGGCCCAAGTTCCTGCTGGTGAACAAGCAGCAAATCCTCCAGCAGCAAATCTTCCAGCTCAGGTTCCACAACCGGCAGCACCTACTGGTGGGCCCAATGCAAACCCACTTGATCTGTTTCCCCAGGGCCTTCCCAATATGGGTGCAAATGCTGGTGCAGGCAATTTGGATTTCCTGCGCAACAGTCCACAGTTCCAAGCCTTGCGAGCTATGGTACAAGCAAACCCTCAAATTCTGCAGCCTATGCTTCAAGAGTTGGGGAAGCAAAATCCACATCTAATGCAGCTCATTCAAGCTCATCAAGCTGACTTCTTACGCTTGATTAATGAACCCGTTGAAGGGGGTGAAGGGAACCTATTGGAGCAGTTGGGTGCAGCAGTGCCACAGGCTGTGACCGTCACCCCTGAAGAGCGAGAGGCCATTGAACGCCTTGAAGCTATGGGTTTCGATCGGGCGCTAGTACTGGAGGTATACTTTGCATGCAACAAGAACGAGGAGCTGGCCGCCAACTATCTTCTTGATCACATGCACGAGTTTGAGGAATGA

Protein Analysis

390

Amino Acids

41.01

Weight (kDa)

4.63

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 2.1e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 2e-17 Ubiquitin family
UBA PF00627 159 - 196 1.4e-11 UBA/TS-N domain
XPC-binding PF09280 264 - 319 1.4e-23 XPC-binding domain
UBA PF00627 345 - 380 8.5e-12 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 803
Acc36I ACCTGC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 29
AccI GTMKAC 2 cut(s) 479, 1095
AccII CGCG 1 cut(s) 41
AciI CCGC 4 cut(s) 125, 384, 626, 1128
AclWI GGATC 1 cut(s) 528
AcoI YGGCCR 2 cut(s) 436, 1125
AcsI RAATTY 1 cut(s) 855
AcuI CTGAAG 1 cut(s) 1050
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 4 cut(s) 116, 298, 840, 1086
AfiI CCNNNNNNNGG 6 cut(s) 571, 625, 713, 764, 962, 963
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 7 cut(s) 25, 420, 875, 917, 962, 1049, 1058
AjnI CCWGG 1 cut(s) 747
Alw26I GTCTC 2 cut(s) 56, 86
AlwI GGATC 1 cut(s) 528
AlwNI CAGNNNCTG 2 cut(s) 341, 353
AoxI GGCC 7 cut(s) 234, 436, 627, 716, 751, 1041, 1125
ApaI GGGCCC 1 cut(s) 720
ApoI RAATTY 1 cut(s) 855
AseI ATTAAT 1 cut(s) 948
AspLEI GCGC 3 cut(s) 358, 804, 1081
AspS9I GGNCC 4 cut(s) 628, 716, 717, 751
AsuHPI GGTGA 4 cut(s) 231, 656, 980, 1015
BaeGI GKGCMC 2 cut(s) 32, 720
BalI TGGCCA 1 cut(s) 438
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 720
BauI CACGAG 1 cut(s) 1154
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 749
BclI TGATCA 1 cut(s) 1144
BcoDI GTCTC 2 cut(s) 56, 86
BfaI CTAG 5 cut(s) 176, 294, 455, 497, 1082
BfmI CTRYAG 1 cut(s) 860
BfoI RGCGCY 1 cut(s) 1082
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 298
BmcAI AGTACT 2 cut(s) 298, 1086
Bme1390I CCNGG 1 cut(s) 749
BmgT120I GGNCC 4 cut(s) 628, 716, 717, 751
BmiI GGNNCC 5 cut(s) 31, 250, 690, 718, 977
BmrFI CCNGG 1 cut(s) 749
BmsI GCATC 2 cut(s) 123, 455
BpmI CTGGAG 5 cut(s) 238, 318, 330, 648, 1109
Bpu10I CCTNAGC 2 cut(s) 603, 684
BsaJI CCNNGG 4 cut(s) 231, 309, 747, 748
Bsc4I CCNNNNNNNGG 6 cut(s) 571, 625, 713, 764, 962, 963
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 3 cut(s) 255, 715, 1092
BseBI CCWGG 1 cut(s) 749
BseDI CCNNGG 4 cut(s) 231, 309, 747, 748
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 6 cut(s) 571, 625, 713, 764, 962, 963
BseMII CTCAG 3 cut(s) 558, 594, 698
BseNI ACTGG 3 cut(s) 255, 715, 1092
BseRI GAGGAG 1 cut(s) 1133
BseSI GKGCMC 2 cut(s) 32, 720
BseYI CCCAGC 1 cut(s) 325
BsgI GTGCAG 4 cut(s) 126, 288, 801, 1017
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 2 cut(s) 45, 1075
BshFI GGCC 7 cut(s) 236, 438, 629, 718, 753, 1043, 1127
BshNI GGYRCC 1 cut(s) 29
BsiEI CGRYCG 2 cut(s) 45, 1075
BsiSI CCGG 2 cut(s) 246, 698
BslI CCNNNNNNNGG 6 cut(s) 571, 625, 713, 764, 962, 963
BsmAI GTCTC 2 cut(s) 56, 86
BsmBI CGTCTC 2 cut(s) 56, 86
BsmI GAATGC 1 cut(s) 597
BsnI GGCC 7 cut(s) 236, 438, 629, 718, 753, 1043, 1127
Bsp120I GGGCCC 1 cut(s) 716
Bsp1286I GDGCHC 2 cut(s) 32, 720
Bsp143I GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
Bsp68I TCGCGA 1 cut(s) 41
BspACI CCGC 4 cut(s) 125, 384, 626, 1128
BspANI GGCC 7 cut(s) 236, 438, 629, 718, 753, 1043, 1127
BspCNI CTCAG 3 cut(s) 559, 595, 697
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 5 cut(s) 31, 250, 690, 718, 977
BspMAI CTGCAG 1 cut(s) 864
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 1 cut(s) 528
BspQI GCTCTTC 1 cut(s) 1026
BspT107I GGYRCC 1 cut(s) 29
BspTI CTTAAG 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 697
BsrI ACTGG 3 cut(s) 255, 715, 1092
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 4 cut(s) 231, 309, 747, 748
BssMI GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
BssNAI GTATAC 1 cut(s) 1096
BssSI CACGAG 1 cut(s) 1154
BssT1I CCWWGG 1 cut(s) 231
Bst1107I GTATAC 1 cut(s) 1096
Bst2BI CACGAG 1 cut(s) 1154
Bst2UI CCWGG 1 cut(s) 749
Bst4CI ACNGT 6 cut(s) 67, 484, 532, 809, 816, 1021
Bst6I CTCTTC 2 cut(s) 54, 1026
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 3 cut(s) 104, 133, 868
BstC8I GCNNGC 7 cut(s) 360, 381, 609, 784, 831, 1105, 1125
BstDEI CTNAG 3 cut(s) 567, 603, 684
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 1082
BstHHI GCGC 3 cut(s) 358, 804, 1081
BstKTI GATC 6 cut(s) 45, 425, 523, 739, 1075, 1147
BstMAI GTCTC 2 cut(s) 56, 86
BstMBI GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
BstMCI CGRYCG 2 cut(s) 45, 1075
BstNI CCWGG 1 cut(s) 749
BstNSI RCATGY 2 cut(s) 1107, 1153
BstSCI CCNGG 1 cut(s) 747
BstSFI CTRYAG 1 cut(s) 860
BstSLI GKGCMC 2 cut(s) 32, 720
BstUI CGCG 1 cut(s) 41
BstZ17I GTATAC 1 cut(s) 1096
BsuRI GGCC 7 cut(s) 236, 438, 629, 718, 753, 1043, 1127
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 1 cut(s) 1008
BtuMI TCGCGA 1 cut(s) 41
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 7 cut(s) 360, 381, 609, 784, 831, 1105, 1125
CaiI CAGNNNCTG 2 cut(s) 341, 353
CfoI GCGC 3 cut(s) 358, 804, 1081
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 4 cut(s) 628, 716, 717, 751
Csp6I GTAC 4 cut(s) 115, 297, 839, 1085
CviAII CATG 2 cut(s) 1104, 1150
CviQI GTAC 4 cut(s) 115, 297, 839, 1085
DdeI CTNAG 3 cut(s) 567, 603, 684
DpnI GATC 6 cut(s) 44, 424, 522, 738, 1074, 1146
DpnII GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
DraIII CACNNNGTG 1 cut(s) 104
EaeI YGGCCR 2 cut(s) 436, 1125
Eam1104I CTCTTC 2 cut(s) 54, 1026
EarI CTCTTC 2 cut(s) 54, 1026
Eco130I CCWWGG 1 cut(s) 231
Eco147I AGGCCT 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 720
Eco57I CTGAAG 1 cut(s) 1050
EcoO109I RGGNCCY 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 747
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 2 cut(s) 56, 86
FaeI CATG 2 cut(s) 1107, 1153
FatI CATG 2 cut(s) 1103, 1149
FauI CCCGC 1 cut(s) 132
FbaI TGATCA 1 cut(s) 1144
FblI GTMKAC 2 cut(s) 479, 1095
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 720
FspBI CTAG 5 cut(s) 176, 294, 455, 497, 1082
FspI TGCGCA 1 cut(s) 803
GlaI GCGC 3 cut(s) 357, 803, 1080
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 5 cut(s) 238, 318, 330, 648, 1109
HaeII RGCGCY 1 cut(s) 1082
HaeIII GGCC 7 cut(s) 236, 438, 629, 718, 753, 1043, 1127
HapII CCGG 2 cut(s) 246, 698
HhaI GCGC 3 cut(s) 358, 804, 1081
Hin1II CATG 2 cut(s) 1107, 1153
Hin6I GCGC 3 cut(s) 356, 802, 1079
HinP1I GCGC 3 cut(s) 356, 802, 1079
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 4 cut(s) 371, 416, 476, 493
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 2 cut(s) 246, 698
HphI GGTGA 4 cut(s) 231, 656, 980, 1015
Hpy166II GTNNAC 6 cut(s) 115, 222, 480, 647, 812, 1096
Hpy188I TCNGA 1 cut(s) 427
Hpy8I GTNNAC 6 cut(s) 115, 222, 480, 647, 812, 1096
HpyAV CCTTC 4 cut(s) 19, 764, 956, 965
HpyCH4III ACNGT 6 cut(s) 67, 484, 532, 809, 816, 1021
HpyF3I CTNAG 3 cut(s) 567, 603, 684
Hsp92II CATG 2 cut(s) 1107, 1153
HspAI GCGC 3 cut(s) 356, 802, 1079
Ksp22I TGATCA 1 cut(s) 1144
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 8 cut(s) 248, 307, 337, 343, 349, 355, 985, 1120
LweI GCATC 2 cut(s) 123, 455
MaeI CTAG 5 cut(s) 176, 294, 455, 497, 1082
MaeIII GTNAC 2 cut(s) 1015, 1021
MalI GATC 6 cut(s) 44, 424, 522, 738, 1074, 1146
MboI GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
MboII GAAGA 4 cut(s) 71, 668, 1043, 1130
MhlI GDGCHC 2 cut(s) 32, 720
MlsI TGGCCA 1 cut(s) 438
MluCI AATT 3 cut(s) 84, 787, 855
MluNI TGGCCA 1 cut(s) 438
MlyI GAGTC 1 cut(s) 485
Mox20I TGGCCA 1 cut(s) 438
MscI TGGCCA 1 cut(s) 438
MseI TTAA 4 cut(s) 159, 221, 558, 948
Msp20I TGGCCA 1 cut(s) 438
MspA1I CMGCKG 2 cut(s) 362, 626
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 246, 698
MspR9I CCNGG 1 cut(s) 749
Mva1269I GAATGC 1 cut(s) 597
MvaI CCWGG 1 cut(s) 749
MvnI CGCG 1 cut(s) 41
NdeII GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
NlaIII CATG 2 cut(s) 1107, 1153
NlaIV GGNNCC 5 cut(s) 31, 250, 690, 718, 977
NmeAIII GCCGAG 1 cut(s) 290
NmuCI GTSAC 2 cut(s) 1015, 1021
NruI TCGCGA 1 cut(s) 41
NsbI TGCGCA 1 cut(s) 803
NspI RCATGY 2 cut(s) 1107, 1153
PaeI GCATGC 1 cut(s) 1107
PasI CCCWGGG 1 cut(s) 748
PceI AGGCCT 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 1026
PctI GAATGC 1 cut(s) 597
PfeI GAWTC 3 cut(s) 371, 416, 493
Ple19I CGATCG 2 cut(s) 45, 1075
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 948
Psp6I CCWGG 1 cut(s) 747
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 1 cut(s) 747
PspN4I GGNNCC 5 cut(s) 31, 250, 690, 718, 977
PspOMI GGGCCC 1 cut(s) 716
PspPI GGNCC 4 cut(s) 628, 716, 717, 751
PstI CTGCAG 1 cut(s) 864
PstNI CAGNNNCTG 2 cut(s) 341, 353
PvuI CGATCG 2 cut(s) 45, 1075
PvuII CAGCTG 1 cut(s) 362
RruI TCGCGA 1 cut(s) 41
RsaI GTAC 4 cut(s) 116, 298, 840, 1086
RsaNI GTAC 4 cut(s) 115, 297, 839, 1085
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 4 cut(s) 159, 221, 558, 948
Sau3AI GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
Sau96I GGNCC 4 cut(s) 628, 716, 717, 751
ScaI AGTACT 2 cut(s) 298, 1086
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 749
SduI GDGCHC 2 cut(s) 32, 720
SfaNI GCATC 2 cut(s) 123, 455
SfcI CTRYAG 1 cut(s) 860
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SphI GCATGC 1 cut(s) 1107
Sse9I AATT 3 cut(s) 84, 787, 855
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 4 cut(s) 125, 384, 626, 1128
SspMI CTAG 5 cut(s) 176, 294, 455, 497, 1082
StuI AGGCCT 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 747
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 6 cut(s) 67, 484, 532, 809, 816, 1021
TaqI TCGA 2 cut(s) 45, 1071
TasI AATT 3 cut(s) 84, 787, 855
TatI WGTACW 2 cut(s) 296, 1084
TauI GCSGC 3 cut(s) 386, 629, 1130
TfiI GAWTC 3 cut(s) 371, 416, 493
Tru1I TTAA 4 cut(s) 159, 221, 558, 948
Tru9I TTAA 4 cut(s) 159, 221, 558, 948
TscAI CASTG 1 cut(s) 1008
TseFI GTSAC 2 cut(s) 1015, 1021
Tsp45I GTSAC 2 cut(s) 1015, 1021
TspDTI ATGAA 3 cut(s) 17, 131, 966
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 1 cut(s) 1008
Vha464I CTTAAG 1 cut(s) 158
VspI ATTAAT 1 cut(s) 948
XapI RAATTY 1 cut(s) 855
XbaI TCTAGA 2 cut(s) 175, 496
XceI RCATGY 2 cut(s) 1107, 1153
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XmiI GTMKAC 2 cut(s) 479, 1095
XspI CTAG 5 cut(s) 176, 294, 455, 497, 1082
ZrmI AGTACT 2 cut(s) 298, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.