Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014482

Physical Location & Seq

Genomic Coordinates Forward (+)

15703078 .. 15704272

Gene Structure 1195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGTGTTCGCTGCAGAAACAGCTTTTCAACAACGGAGATAAGCTCTTTAGTTCTCGACATAACCGACGGGTTTCGATAGAACAAGTCCATGTGACAGATTCTCTTTCCGTAAACTCGATAAACCTGTTTCATAAACCTATATGTTATCCAATATCATCCATCATCACTTCAAGAAAGAGCAAAAGCCATTTTAGTGTTTGTGCAACAAGGAGAAGAAGGGTGCATTCGAACTCGGATACATACGTACTGTTAGAGGCAGGACAAGATGAGCAGTTTGTGACGGAAGACGAACTCAAGGCTAAGCTCAGAGGGTGGCTCGAAAATTGGCCGGTGAACTCTTTGCCACCAGACCTGGCTAGGTTCGATGACCTTGATGAAGCCGTAGATTTCTTGGTTAAAGCTGTATGTGAACTAGAAATTGATGGAGAAGTGGGTTCTGTTCAATGGTACCAAGTTCGTCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRR7

Protein Analysis

156

Amino Acids

17.97

Weight (kDa)

5.74

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRR7	PF12095	75 - 156	5.7e-29	Protein CHLORORESPIRATORY REDUCTION 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39210
fragaria_vesca	FvH4_6g46840
malus_domestica	MD09G1066900.v1.1
prunus_persica	Prupe.3G254800_v2.0.a1
pyrus_communis	pycom111g05620 pycom17g05950
rosa_chinensis	RchiOBHm_Chr2g0165831
rosa_laevigata	RLG00000021560
rosa_multiflora	Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085460
rosa_rugosa	Rorug02G0518200
rosa_samantha	Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana	Rw2G048690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	450
AcoI	YGGCCR	1 cut(s)	329
AfaI	GTAC	2 cut(s)	249, 452
AgsI	TTSAA	3 cut(s)	31, 174, 446
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	4 cut(s)	25, 46, 307, 404
AluI	AGCT	4 cut(s)	25, 46, 307, 404
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	13
Asp718I	GGTACC	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	346
AsuII	TTCGAA	1 cut(s)	230
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BanI	GGYRCC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	294
BccI	CCATC	2 cut(s)	170, 419
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	360, 416
BfmI	CTRYAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	14
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	294
BplI	GAGNNNNNCTC	4 cut(s)	30, 62, 303, 335
Bpu1102I	GCTNAGC	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	356
BseGI	GGATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	331
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1720I	GCTNAGC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	303, 308
BstF5I	GGATG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	14
BstSNI	TACGTA	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	248, 451
CviAII	CATG	1 cut(s)	92
CviQI	GTAC	2 cut(s)	248, 451
DdeI	CTNAG	2 cut(s)	303, 308
EaeI	YGGCCR	1 cut(s)	329
Eco105I	TACGTA	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	95
FaiI	YATR	7 cut(s)	63, 93, 135, 143, 145, 244, 409
FalI	AAGNNNNNCTT	1 cut(s)	447
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	2 cut(s)	360, 416
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	1 cut(s)	95
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	115, 337, 413
Hpy188I	TCNGA	2 cut(s)	238, 311
Hpy188III	TCNNGA	3 cut(s)	57, 174, 464
Hpy8I	GTNNAC	3 cut(s)	115, 337, 413
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	16, 206, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	303, 308
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	95
KpnI	GGTACC	1 cut(s)	454
LpnPI	CCDG	6 cut(s)	140, 246, 341, 345, 363, 368
MaeI	CTAG	2 cut(s)	360, 416
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	94, 280
MboII	GAAGA	2 cut(s)	228, 299
MluCI	AATT	2 cut(s)	325, 420
MnlI	CCTC	2 cut(s)	250, 305
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	452
NmuCI	GTSAC	2 cut(s)	94, 280
NspV	TTCGAA	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	18
RsaI	GTAC	2 cut(s)	249, 452
RsaNI	GTAC	2 cut(s)	248, 451
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	356
SfcI	CTRYAG	1 cut(s)	14
SfuI	TTCGAA	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	296, 464
SmoI	CTYRAG	2 cut(s)	296, 464
SnaBI	TACGTA	1 cut(s)	247
Sse9I	AATT	2 cut(s)	325, 420
SspMI	CTAG	2 cut(s)	360, 416
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	6 cut(s)	58, 77, 119, 230, 321, 366
TasI	AATT	2 cut(s)	325, 420
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseFI	GTSAC	2 cut(s)	94, 280
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	2 cut(s)	94, 280
TspDTI	ATGAA	2 cut(s)	122, 393
TspGWI	ACGGA	3 cut(s)	51, 100, 299
XspI	CTAG	2 cut(s)	360, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.