Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003227.1

Orthogroup ID

OG0014482

Physical Location & Seq

Genomic Coordinates Reverse (-)

700 .. 1617

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003227.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggttccaatggaaggagctttggagaaacagttatgccatagtggagttctctctatcaactgcaaacaagcaacaaagcaggagattcgaacccctttaaaccacctaatgtcgaccaataaaaccgagttcacaagttctgtagtccatcaccgaaatacagtcaaggtttgtgctgtgagaaggagaaggatacatactgatagtgaaacttatgtgttactggaaccaggagaggatgagaagtttgttacagaagaagagttgagggtcaagttgaaaggttggctggaaaactggccagccaagaaccttcctactgatcttgctagattcgaaagcattgatgaagctgttacttatttagtaaggtctgtttgtgaacttgaaatccatggagatgttggttcagttcagtggtacgaagttcgtttagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRR7

Protein Analysis

147

Amino Acids

16.95

Weight (kDa)

5.89

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39210
fragaria_vesca	FvH4_6g46840
malus_domestica	MD09G1066900.v1.1
prunus_persica	Prupe.3G254800_v2.0.a1
pyrus_communis	pycom111g05620 pycom17g05950
rosa_chinensis	RchiOBHm_Chr2g0165831
rosa_laevigata	RLG00000021560
rosa_multiflora	Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085460
rosa_rugosa	Rorug02G0518200
rosa_samantha	Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana	Rw2G048690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	302
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	283, 392
AjnI	CCWGG	1 cut(s)	232
AloI	GAACNNNNNNTCC	2 cut(s)	378, 410
AluBI	AGCT	2 cut(s)	20, 356
AluI	AGCT	2 cut(s)	20, 356
AoxI	GGCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	146
AsuII	TTCGAA	2 cut(s)	91, 339
BalI	TGGCCA	1 cut(s)	304
BarI	GAAGNNNNNNTAC	2 cut(s)	184, 216
BccI	CCATC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	6, 231
BmrFI	CCNGG	1 cut(s)	234
Bpu14I	TTCGAA	2 cut(s)	91, 339
BsaJI	CCNNGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	231, 305
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	231, 305
BshFI	GGCC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	304
Bsp119I	TTCGAA	2 cut(s)	91, 339
Bsp143I	GATC	1 cut(s)	325
Bsp19I	CCATGG	1 cut(s)	397
BspANI	GGCC	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	6, 231
BspT104I	TTCGAA	2 cut(s)	91, 339
BsrI	ACTGG	2 cut(s)	231, 305
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	33, 166
Bst6I	CTCTTC	1 cut(s)	258
BstBI	TTCGAA	2 cut(s)	91, 339
BstC8I	GCNNGC	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	304
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	1 cut(s)	398
CviJI	RGCY	5 cut(s)	20, 292, 304, 308, 356
CviKI_1	RGCY	5 cut(s)	20, 292, 304, 308, 356
CviQI	GTAC	1 cut(s)	424
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DraI	TTTAAA	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	1 cut(s)	401
FaiI	YATR	5 cut(s)	37, 42, 201, 219, 399
FatI	CATG	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	116
FokI	GGATG	1 cut(s)	254
FspBI	CTAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	88, 336
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	117, 135, 386
Hpy8I	GTNNAC	3 cut(s)	117, 135, 386
HpyAV	CCTTC	4 cut(s)	8, 180, 186, 326
HpyCH4III	ACNGT	2 cut(s)	33, 166
HpyCH4V	TGCA	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	7 cut(s)	68, 212, 219, 246, 278, 286, 318
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	222, 253, 358
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	272, 275
MlsI	TGGCCA	1 cut(s)	304
MluNI	TGGCCA	1 cut(s)	304
MnlI	CCTC	2 cut(s)	232, 264
Mox20I	TGGCCA	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	2 cut(s)	6, 231
NspV	TTCGAA	2 cut(s)	91, 339
PfeI	GAWTC	2 cut(s)	88, 336
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	6, 231
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	402
SalI	GTCGAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	7 cut(s)	22, 111, 174, 289, 318, 358, 377
SfcI	CTRYAG	1 cut(s)	144
SfuI	TTCGAA	2 cut(s)	91, 339
SmiMI	CAYNNNNRTG	1 cut(s)	402
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	33, 166
TaqI	TCGA	3 cut(s)	91, 116, 339
TfiI	GAWTC	2 cut(s)	88, 336
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.