Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008709.1

Orthogroup ID

OG0014482

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3444

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1115 bp

ccaaaccgctgcaacctccgaagcaaactccaccaccacacaacgtcatcagccaccaaccaccaaccacccacgccaaaatgaattccggtttcggcctcgaacgcgagctaggccctgaccacagatatcgcccccaacatcaagaatctcacattacatgcaaatgcagcaatttgacaacttctaatccaattcaaattgagaaaagaagaactaacaatccgacgacccaagccttcgatgaatccacgaccaccgccaccatcaaggccgctcgaccacttccgccaccgcgactcctacaccataaccctcgtcgcattctccggcgtcaactgcgcattctagcgactctcatcctctctaatcgctctagtgatcgccgaatcagaacttcctccaatctcttcttcttcttcttcgctgctaccaccattatcaccctctaccagctgcgagtgggaaacgacggcgtcgttttggggatggtgatcatcgtcgtctttggaatcgacggctgcggcggcatcgtcgtcgtcaatgttggtgtccgaatcgactggtcgtggaggagtaccaatagctactatggatatggaggcatggtggatagcgaagaaatcaaggatgaagttgattggaccaagatgctcaattttgcaagcaaaatggttccaatggaaggagctttggagaaacagttatgccatagtggagttctctctatcaactgcaaacaagcaacaaagcaggagattcgaacccctttaaaccacctaatgtcgacctataaaaccgagttcacaagttctgtagtccatcaccgaaatacagtcaaggtttgtgctgtgagaaggagaaggatacatactgatagtgaaacttatgtgttactggaaccaggagaggatgagaagtttgttacagaagaagagttgagggtcaagttgaaaggttggctggaaaactggccagccaagaaccttcctactgatcttgctagattcgaaagcattgatgaagctgttacttatttagtaaggtctgtttgtgaacttgaaatccatggagatgttggttcagttcagtggtacgaagttcgtttagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRR7

Protein Analysis

370

Amino Acids

42.19

Weight (kDa)

9.01

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39210
fragaria_vesca	FvH4_6g46840
malus_domestica	MD09G1066900.v1.1
prunus_persica	Prupe.3G254800_v2.0.a1
pyrus_communis	pycom111g05620 pycom17g05950
rosa_chinensis	RchiOBHm_Chr2g0165831
rosa_laevigata	RLG00000021560
rosa_multiflora	Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085460
rosa_rugosa	Rorug02G0518200
rosa_samantha	Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana	Rw2G048690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	787
AccII	CGCG	2 cut(s)	107, 297
AciI	CCGC	7 cut(s)	7, 260, 275, 289, 295, 524, 527
AcoI	YGGCCR	1 cut(s)	973
AcsI	RAATTY	1 cut(s)	84
AcyI	GRCGYC	2 cut(s)	333, 476
AfaI	GTAC	2 cut(s)	579, 1096
AfiI	CCNNNNNNNGG	1 cut(s)	685
AgsI	TTSAA	3 cut(s)	199, 954, 1063
AjnI	CCWGG	1 cut(s)	903
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AloI	GAACNNNNNNTCC	4 cut(s)	207, 239, 1049, 1081
AluBI	AGCT	5 cut(s)	111, 456, 587, 691, 1027
AluI	AGCT	5 cut(s)	111, 456, 587, 691, 1027
AoxI	GGCC	4 cut(s)	96, 114, 272, 973
ApeKI	GCWGC	5 cut(s)	9, 170, 427, 456, 521
ApoI	RAATTY	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	115, 644
AsuHPI	GGTGA	3 cut(s)	435, 504, 817
AsuII	TTCGAA	2 cut(s)	762, 1010
AvaII	GGWCC	1 cut(s)	644
BalI	TGGCCA	1 cut(s)	975
BarI	GAAGNNNNNNTAC	2 cut(s)	855, 887
BbvI	GCAGC	4 cut(s)	182, 414, 443, 508
BccI	CCATC	3 cut(s)	274, 483, 830
BceAI	ACGGC	2 cut(s)	489, 534
BcgI	CGANNNNNNTGC	4 cut(s)	519, 553, 742, 776
BciT130I	CCWGG	1 cut(s)	905
BciVI	GTATCC	1 cut(s)	860
BclI	TGATCA	1 cut(s)	494
BfaI	CTAG	4 cut(s)	112, 349, 377, 1004
BfmI	CTRYAG	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	860
BisI	GCNGC	8 cut(s)	10, 171, 275, 428, 457, 522, 525, 528
BlsI	GCNGC	8 cut(s)	11, 172, 276, 429, 458, 523, 526, 529
Bme1390I	CCNGG	1 cut(s)	905
Bme18I	GGWCC	1 cut(s)	644
BmgT120I	GGNCC	2 cut(s)	115, 644
BmiI	GGNNCC	2 cut(s)	677, 902
BmrFI	CCNGG	1 cut(s)	905
BmsI	GCATC	2 cut(s)	539, 641
Bpu14I	TTCGAA	2 cut(s)	762, 1010
BsaBI	GATNNNNATC	1 cut(s)	493
BsaHI	GRCGYC	2 cut(s)	333, 476
BsaJI	CCNNGG	1 cut(s)	1068
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	6 cut(s)	284, 314, 593, 623, 688, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	685
Bse1I	ACTGG	3 cut(s)	568, 902, 976
Bse8I	GATNNNNATC	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	905
BseDI	CCNNGG	1 cut(s)	1068
BseGI	GGATG	4 cut(s)	359, 494, 636, 918
BseJI	GATNNNNATC	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	685
BseNI	ACTGG	3 cut(s)	568, 902, 976
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	182, 414, 443, 508
Bsh1236I	CGCG	2 cut(s)	107, 297
BshFI	GGCC	4 cut(s)	98, 116, 274, 975
BsiSI	CCGG	2 cut(s)	89, 330
BslI	CCNNNNNNNGG	1 cut(s)	685
BsmI	GAATGC	2 cut(s)	323, 344
BsnI	GGCC	4 cut(s)	98, 116, 274, 975
Bsp119I	TTCGAA	2 cut(s)	762, 1010
Bsp143I	GATC	3 cut(s)	381, 494, 996
Bsp19I	CCATGG	1 cut(s)	1068
BspACI	CCGC	7 cut(s)	7, 260, 275, 289, 295, 524, 527
BspANI	GGCC	4 cut(s)	98, 116, 274, 975
BspFNI	CGCG	2 cut(s)	107, 297
BspLI	GGNNCC	2 cut(s)	677, 902
BspT104I	TTCGAA	2 cut(s)	762, 1010
BsrBI	CCGCTC	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	568, 902, 976
BssECI	CCNNGG	1 cut(s)	1068
BssMI	GATC	3 cut(s)	381, 494, 996
BssNI	GRCGYC	2 cut(s)	333, 476
BssT1I	CCWWGG	1 cut(s)	1068
Bst2UI	CCWGG	1 cut(s)	905
Bst4CI	ACNGT	2 cut(s)	704, 837
Bst6I	CTCTTC	2 cut(s)	415, 929
BstACI	GRCGYC	2 cut(s)	333, 476
BstBI	TTCGAA	2 cut(s)	762, 1010
BstC8I	GCNNGC	3 cut(s)	109, 666, 977
BstDSI	CCRYGG	1 cut(s)	1068
BstF5I	GGATG	4 cut(s)	359, 494, 636, 918
BstFNI	CGCG	2 cut(s)	107, 297
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	3 cut(s)	384, 497, 999
BstMBI	GATC	3 cut(s)	381, 494, 996
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 113, 170, 339, 527
BstNI	CCWGG	1 cut(s)	905
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	903
BstSFI	CTRYAG	1 cut(s)	815
BstUI	CGCG	2 cut(s)	107, 297
BstV1I	GCAGC	4 cut(s)	182, 414, 443, 508
BsuI	GTATCC	1 cut(s)	860
BsuRI	GGCC	4 cut(s)	98, 116, 274, 975
BtgI	CCRYGG	1 cut(s)	1068
BtsCI	GGATG	4 cut(s)	359, 494, 636, 918
BtsIMutI	CAGTG	1 cut(s)	1096
Cac8I	GCNNGC	3 cut(s)	109, 666, 977
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	115, 644
CseI	GACGC	2 cut(s)	322, 465
Csp6I	GTAC	2 cut(s)	578, 1095
CviAII	CATG	3 cut(s)	161, 606, 1069
CviQI	GTAC	2 cut(s)	578, 1095
DpnI	GATC	3 cut(s)	383, 496, 998
DpnII	GATC	3 cut(s)	381, 494, 996
DraI	TTTAAA	1 cut(s)	773
EaeI	YGGCCR	1 cut(s)	973
Eam1104I	CTCTTC	2 cut(s)	415, 929
EarI	CTCTTC	2 cut(s)	415, 929
EciI	GGCGGA	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	1068
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	903
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	1068
ErhI	CCWWGG	1 cut(s)	1068
FaeI	CATG	3 cut(s)	164, 609, 1072
FatI	CATG	3 cut(s)	160, 605, 1068
FbaI	TGATCA	1 cut(s)	494
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	8 cut(s)	10, 171, 275, 428, 457, 522, 525, 528
FokI	GGATG	4 cut(s)	346, 501, 643, 925
Fsp4HI	GCNGC	8 cut(s)	10, 171, 275, 428, 457, 522, 525, 528
FspBI	CTAG	4 cut(s)	112, 349, 377, 1004
FspI	TGCGCA	1 cut(s)	343
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	8 cut(s)	10, 171, 275, 428, 457, 522, 525, 528
HaeIII	GGCC	4 cut(s)	98, 116, 274, 975
HapII	CCGG	2 cut(s)	89, 330
HgaI	GACGC	2 cut(s)	322, 465
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	2 cut(s)	333, 476
Hin1II	CATG	3 cut(s)	164, 609, 1072
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	2 cut(s)	337, 788
HindII	GTYRAC	2 cut(s)	337, 788
HinfI	GANTC	9 cut(s)	148, 247, 299, 354, 389, 512, 557, 759, 1007
HpaII	CCGG	2 cut(s)	89, 330
HphI	GGTGA	3 cut(s)	435, 504, 817
Hpy166II	GTNNAC	4 cut(s)	337, 788, 806, 1057
Hpy188I	TCNGA	4 cut(s)	20, 227, 394, 556
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	4 cut(s)	337, 788, 806, 1057
Hpy99I	CGWCG	8 cut(s)	231, 323, 475, 481, 505, 520, 538, 541
HpyAV	CCTTC	5 cut(s)	249, 679, 851, 857, 997
HpyCH4III	ACNGT	2 cut(s)	704, 837
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	5 cut(s)	12, 164, 170, 664, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 113, 170, 339, 527
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	2 cut(s)	333, 476
Hsp92II	CATG	3 cut(s)	164, 609, 1072
HspAI	GCGC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	494
Kzo9I	GATC	3 cut(s)	381, 494, 996
LmnI	GCTCC	1 cut(s)	688
Lsp1109I	GCAGC	4 cut(s)	182, 414, 443, 508
LweI	GCATC	2 cut(s)	539, 641
MaeI	CTAG	4 cut(s)	112, 349, 377, 1004
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	3 cut(s)	893, 924, 1029
MalI	GATC	3 cut(s)	383, 496, 998
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	3 cut(s)	381, 494, 996
MboII	GAAGA	9 cut(s)	224, 402, 405, 408, 411, 414, 631, 943, 946
MlsI	TGGCCA	1 cut(s)	975
MluCI	AATT	5 cut(s)	84, 174, 194, 200, 657
MluNI	TGGCCA	1 cut(s)	975
MlyI	GAGTC	2 cut(s)	293, 348
MmeI	TCCRAC	1 cut(s)	250
Mox20I	TGGCCA	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	975
MseI	TTAA	1 cut(s)	772
MslI	CAYNNNNRTG	2 cut(s)	165, 1073
Msp20I	TGGCCA	1 cut(s)	975
MspA1I	CMGCKG	2 cut(s)	9, 456
MspI	CCGG	2 cut(s)	89, 330
MspR9I	CCNGG	1 cut(s)	905
Mva1269I	GAATGC	2 cut(s)	323, 344
MvaI	CCWGG	1 cut(s)	905
MvnI	CGCG	2 cut(s)	107, 297
MwoI	GCNNNNNNNGC	5 cut(s)	104, 113, 170, 339, 527
NcoI	CCATGG	1 cut(s)	1068
NdeII	GATC	3 cut(s)	381, 494, 996
NlaIII	CATG	3 cut(s)	164, 609, 1072
NlaIV	GGNNCC	2 cut(s)	677, 902
NsbI	TGCGCA	1 cut(s)	343
NspI	RCATGY	1 cut(s)	164
NspV	TTCGAA	2 cut(s)	762, 1010
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PctI	GAATGC	2 cut(s)	323, 344
PfeI	GAWTC	7 cut(s)	148, 247, 389, 512, 557, 759, 1007
PflFI	GACNNNGTC	1 cut(s)	475
PkrI	GCNGC	8 cut(s)	11, 172, 276, 429, 458, 523, 526, 529
PleI	GAGTC	2 cut(s)	293, 348
PpsI	GAGTC	2 cut(s)	293, 348
Psp6I	CCWGG	1 cut(s)	903
PspGI	CCWGG	1 cut(s)	903
PspN4I	GGNNCC	2 cut(s)	677, 902
PspPI	GGNCC	2 cut(s)	115, 644
PsyI	GACNNNGTC	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	456
RsaI	GTAC	2 cut(s)	579, 1096
RsaNI	GTAC	2 cut(s)	578, 1095
RseI	CAYNNNNRTG	2 cut(s)	165, 1073
SalI	GTCGAC	1 cut(s)	786
SaqAI	TTAA	1 cut(s)	772
SatI	GCNGC	8 cut(s)	10, 171, 275, 428, 457, 522, 525, 528
Sau3AI	GATC	3 cut(s)	381, 494, 996
Sau96I	GGNCC	2 cut(s)	115, 644
SchI	GAGTC	2 cut(s)	293, 348
ScrFI	CCNGG	1 cut(s)	905
SfaNI	GCATC	2 cut(s)	539, 641
SfcI	CTRYAG	1 cut(s)	815
SfuI	TTCGAA	2 cut(s)	762, 1010
SinI	GGWCC	1 cut(s)	644
SmiMI	CAYNNNNRTG	2 cut(s)	165, 1073
Sse9I	AATT	5 cut(s)	84, 174, 194, 200, 657
SsiI	CCGC	7 cut(s)	7, 260, 275, 289, 295, 524, 527
SspMI	CTAG	4 cut(s)	112, 349, 377, 1004
StyD4I	CCNGG	1 cut(s)	903
StyI	CCWWGG	1 cut(s)	1068
TaaI	ACNGT	2 cut(s)	704, 837
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	8 cut(s)	101, 242, 279, 515, 560, 762, 787, 1010
TasI	AATT	5 cut(s)	84, 174, 194, 200, 657
TauI	GCSGC	3 cut(s)	277, 527, 530
TfiI	GAWTC	7 cut(s)	148, 247, 389, 512, 557, 759, 1007
Tru1I	TTAA	1 cut(s)	772
Tru9I	TTAA	1 cut(s)	772
TscAI	CASTG	1 cut(s)	1096
TseI	GCWGC	5 cut(s)	9, 170, 427, 456, 521
TspDTI	ATGAA	4 cut(s)	97, 260, 647, 1037
TspRI	CASTG	1 cut(s)	1096
Tth111I	GACNNNGTC	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	644
XapI	RAATTY	1 cut(s)	84
XceI	RCATGY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1075
XmiI	GTMKAC	1 cut(s)	787
XspI	CTAG	4 cut(s)	112, 349, 377, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.