Rw2G048690

Protein CHLORORESPIRATORY REDUCTION 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014482
Physical Location & Seq
Forward (+)
76241403 .. 76242320
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048690.1

Sequence Viewer

Length: 414 bp
ATGGTTCCAATGGAAGGAGCTTTGGAGAAACAGTTATGCCACAGTGGAGTTCTCTCTATCAACTGCAAACAAGCAACAAAGCAGGAGATTCGAACCCCTTTAAACCACCTAATGTCGACCAATAAAACCGAGTTCACAAGTTCTGTAGTCCATCACCGAAATACAGTCAAGGTTTGTGCTGTGAGAAGGAGAAGGATACATACTGATAGTGAAACTTATGTGTTACTGGAACCAGGAGAGGAAGAGAAGTTTGTTACAGAAGAAGAGTTGAGGTCAACCAAGAACCTTCCTACTGATCTTGCTAGATTCGAAAGCATTGATGATGCTGTTACTTATTTAGTAAGGTCTGTTTGTGAACTTGAAATCCATGGAGATGTTGGTTCAGTTCAGTGGTACGAAGTTCGTTTAGAATGA

Protein Analysis

137

Amino Acids

15.71

Weight (kDa)

5.7

Isoelectric Point (pI)

63.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRR7 PF12095 66 - 137 7.3e-21 Protein CHLORORESPIRATORY REDUCTION 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39210
fragaria_vesca FvH4_6g46840
malus_domestica MD09G1066900.v1.1
prunus_persica Prupe.3G254800_v2.0.a1
pyrus_communis pycom111g05620 pycom17g05950
rosa_chinensis RchiOBHm_Chr2g0165831
rosa_laevigata RLG00000021560
rosa_multiflora Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii Rroxscaffold_2G00085460
rosa_rugosa Rorug02G0518200
rosa_samantha Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana Rw2G048690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 116
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 362
AjnI CCWGG 1 cut(s) 232
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 146
AsuII TTCGAA 2 cut(s) 91, 309
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
BccI CCATC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 189
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 144
BfuI GTATCC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 6, 231
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 313
Bpu14I TTCGAA 2 cut(s) 91, 309
BsaJI CCNNGG 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 14
Bsp119I TTCGAA 2 cut(s) 91, 309
Bsp143I GATC 1 cut(s) 295
Bsp19I CCATGG 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 6, 231
BspT104I TTCGAA 2 cut(s) 91, 309
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 33, 44, 166
Bst6I CTCTTC 2 cut(s) 237, 258
BstBI TTCGAA 2 cut(s) 91, 309
BstDSI CCRYGG 1 cut(s) 367
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 144
BsuI GTATCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 367
BtsIMutI CAGTG 2 cut(s) 49, 395
Csp6I GTAC 1 cut(s) 394
CviAII CATG 1 cut(s) 368
CviJI RGCY 1 cut(s) 20
CviKI_1 RGCY 1 cut(s) 20
CviQI GTAC 1 cut(s) 394
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DraI TTTAAA 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 237, 258
EarI CTCTTC 2 cut(s) 237, 258
Eco130I CCWWGG 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 1 cut(s) 371
FaiI YATR 4 cut(s) 37, 201, 219, 369
FatI CATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 116
FspBI CTAG 1 cut(s) 303
Hin1II CATG 1 cut(s) 371
HincII GTYRAC 2 cut(s) 117, 276
HindII GTYRAC 2 cut(s) 117, 276
HinfI GANTC 2 cut(s) 88, 306
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 4 cut(s) 117, 135, 276, 356
Hpy8I GTNNAC 4 cut(s) 117, 135, 276, 356
HpyAV CCTTC 4 cut(s) 8, 180, 186, 296
HpyCH4III ACNGT 3 cut(s) 33, 44, 166
HpyCH4V TGCA 1 cut(s) 66
Hsp92II CATG 1 cut(s) 371
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 4 cut(s) 68, 212, 219, 246
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 222, 253, 328
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 3 cut(s) 254, 272, 275
MnlI CCTC 2 cut(s) 232, 264
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NcoI CCATGG 1 cut(s) 367
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 2 cut(s) 6, 231
NspV TTCGAA 2 cut(s) 91, 309
PfeI GAWTC 2 cut(s) 88, 306
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 6, 231
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 372
SalI GTCGAC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 101
Sau3AI GATC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 234
SetI ASST 6 cut(s) 22, 111, 174, 275, 288, 347
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 1 cut(s) 144
SfuI TTCGAA 2 cut(s) 91, 309
SmiMI CAYNNNNRTG 1 cut(s) 372
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 3 cut(s) 33, 44, 166
TaqI TCGA 3 cut(s) 91, 116, 309
TfiI GAWTC 2 cut(s) 88, 306
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 2 cut(s) 49, 395
TspRI CASTG 2 cut(s) 49, 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.