Rh2BG595900

Protein CHLORORESPIRATORY REDUCTION 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014482
Physical Location & Seq
Forward (+)
81769513 .. 81771093
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG595900.1

Sequence Viewer

Length: 333 bp
ATGTCGACCAATAAAACCGAGTTCACAAGTTCTGTAGTCCATCACCGAAATACAGTCAAGGTTTGTGCTGTGAGAAGGAGAAGGATACATACTGATAGTGAAACTTATGTGTTACTGGAACCAGGAGAGGATGAGAAGTTTGTTACAGAAGAAGAGTTGAGGGTCAAGTTGAAAGGTTGGCTGGAAAACTGGCCAGCCAAGAACCTTCCTACTGATCTTGCTAGATTCGAAAGCATTGATGAAGCTGTTACTTATTTAGTAAGGTCTGTTTGTGAACTTGAAATCCATGGAGATGTTGGTTCAGTTCAGTGGTACGAAGTTCGTTTAGAATGA

Protein Analysis

110

Amino Acids

12.85

Weight (kDa)

5.41

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRR7 PF12095 29 - 110 1.3e-29 Protein CHLORORESPIRATORY REDUCTION 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39210
fragaria_vesca FvH4_6g46840
malus_domestica MD09G1066900.v1.1
prunus_persica Prupe.3G254800_v2.0.a1
pyrus_communis pycom111g05620 pycom17g05950
rosa_chinensis RchiOBHm_Chr2g0165831
rosa_laevigata RLG00000021560
rosa_multiflora Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii Rroxscaffold_2G00085460
rosa_rugosa Rorug02G0518200
rosa_samantha Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana Rw2G048690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 191
AfaI GTAC 1 cut(s) 314
AgsI TTSAA 2 cut(s) 172, 281
AjnI CCWGG 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AoxI GGCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 35
AsuII TTCGAA 1 cut(s) 228
BalI TGGCCA 1 cut(s) 193
BarI GAAGNNNNNNTAC 2 cut(s) 73, 105
BccI CCATC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 123
BciVI GTATCC 1 cut(s) 78
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 33
BfuI GTATCC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 120, 194
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 136
BseNI ACTGG 2 cut(s) 120, 194
BshFI GGCC 1 cut(s) 193
BsnI GGCC 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 228
Bsp143I GATC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 286
BspANI GGCC 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 228
BsrI ACTGG 2 cut(s) 120, 194
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 33
BsuI GTATCC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 287
CviJI RGCY 4 cut(s) 181, 193, 197, 245
CviKI_1 RGCY 4 cut(s) 181, 193, 197, 245
CviQI GTAC 1 cut(s) 313
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 290
FaiI YATR 3 cut(s) 90, 108, 288
FatI CATG 1 cut(s) 286
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 143
FspBI CTAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 193
Hin1II CATG 1 cut(s) 290
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 225
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 3 cut(s) 6, 24, 275
Hpy8I GTNNAC 3 cut(s) 6, 24, 275
HpyAV CCTTC 3 cut(s) 69, 75, 215
HpyCH4III ACNGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 101, 108, 135, 167, 175, 207
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 3 cut(s) 111, 142, 247
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 2 cut(s) 161, 164
MlsI TGGCCA 1 cut(s) 193
MluNI TGGCCA 1 cut(s) 193
MnlI CCTC 2 cut(s) 121, 153
Mox20I TGGCCA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 193
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NcoI CCATGG 1 cut(s) 286
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 120
NspV TTCGAA 1 cut(s) 228
PfeI GAWTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 120
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 291
SalI GTCGAC 1 cut(s) 4
Sau3AI GATC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 123
SetI ASST 5 cut(s) 63, 178, 207, 247, 266
SfcI CTRYAG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 291
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 5, 228
TfiI GAWTC 1 cut(s) 225
TscAI CASTG 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.