Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014482

Physical Location & Seq

Genomic Coordinates Reverse (-)

64949778 .. 64950522

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0518200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAACACCTTCGTAGGTGAGGCGTACGATCAGGTTCGTGAAATGTGCATATTCCTCTTAAACGACTTCAAGCTGCCGGCGGACAAAGCCCTAGCCGTTTACATCCAGTCTCCCGGCTCCGCCTTCCTCTTCTGCGGCGCCGTCACCGTCGTTCGACCCTCGGCGGTGCTCTCCCTCCCCTGGCCGGAGCCCGGTGGCCAGCTCCAGCTCACCACCGACGCCGCCCCACTCTCCGCCAAGATCGGGGTCTTGGTCGAGGACCTGGCCACGCTGCCGTCTCTGGATGTCACCGCCGAGAAGCGAATTGAGCGTTTGGCGATGAAGGTTGGGGAGAATCTGTTCAATTTTATGCAGTCGTTTTGTGGTGTCGATGGCTCCAAGCTGGTGGTGCCCATGGATATATTGGATCGGTGGTTCAAGAAGTTCCAGGAGAGGGCTAAGCGAGACCCCGAGTACTTGAAGGGCTTCGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRR7

Protein Analysis

158

Amino Acids

17.53

Weight (kDa)

5.21

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hikeshi-like_N	PF05603	9 - 61	3.3e-06	Hikeshi-like, N-terminal domain
Hikeshi-like_C	PF21057	102 - 154	1.5e-12	Hikeshi-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39210
fragaria_vesca	FvH4_6g46840
malus_domestica	MD09G1066900.v1.1
prunus_persica	Prupe.3G254800_v2.0.a1
pyrus_communis	pycom111g05620 pycom17g05950
rosa_chinensis	RchiOBHm_Chr2g0165831
rosa_laevigata	RLG00000021560
rosa_multiflora	Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085460
rosa_rugosa	Rorug02G0518200
rosa_samantha	Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana	Rw2G048690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	137, 388
AciI	CCGC	7 cut(s)	80, 120, 135, 164, 222, 234, 291
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	3 cut(s)	182, 196, 264
AcyI	GRCGYC	2 cut(s)	138, 219
AfaI	GTAC	2 cut(s)	26, 455
AfiI	CCNNNNNNNGG	5 cut(s)	180, 184, 191, 243, 433
AgsI	TTSAA	4 cut(s)	70, 343, 418, 460
AjnI	CCWGG	3 cut(s)	179, 261, 426
AloI	GAACNNNNNNTCC	4 cut(s)	323, 355, 398, 430
AluBI	AGCT	4 cut(s)	73, 202, 208, 382
AluI	AGCT	4 cut(s)	73, 202, 208, 382
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	3 cut(s)	114, 282, 438
AlwI	GGATC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	3 cut(s)	182, 196, 264
ApeKI	GCWGC	2 cut(s)	73, 271
Asp700I	GAANNNNTTC	3 cut(s)	8, 338, 464
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	2 cut(s)	114, 192
AsuHPI	GGTGA	4 cut(s)	29, 136, 202, 280
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	393
BalI	TGGCCA	2 cut(s)	198, 266
BanI	GGYRCC	2 cut(s)	137, 388
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	60, 258
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	3 cut(s)	80, 125, 259
BciT130I	CCWGG	3 cut(s)	181, 263, 428
BcnI	CCSGG	2 cut(s)	114, 192
BcoDI	GTCTC	3 cut(s)	114, 282, 438
BfaI	CTAG	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	4 cut(s)	74, 136, 222, 272
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	4 cut(s)	75, 137, 223, 273
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	5 cut(s)	114, 181, 192, 263, 428
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	5 cut(s)	118, 139, 189, 376, 390
BmrFI	CCNGG	5 cut(s)	114, 181, 192, 263, 428
BpmI	CTGGAG	1 cut(s)	188
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuMI	CCSGG	2 cut(s)	114, 192
BsaHI	GRCGYC	2 cut(s)	138, 219
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	159, 179, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	5 cut(s)	180, 184, 191, 243, 433
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	106
BseBI	CCWGG	3 cut(s)	181, 263, 428
BseDI	CCNNGG	3 cut(s)	159, 179, 393
BseGI	GGATG	2 cut(s)	102, 289
BseLI	CCNNNNNNNGG	5 cut(s)	180, 184, 191, 243, 433
BseNI	ACTGG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	60, 258
BshFI	GGCC	3 cut(s)	184, 198, 266
BshNI	GGYRCC	2 cut(s)	137, 388
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	4 cut(s)	77, 114, 185, 192
BsiWI	CGTACG	1 cut(s)	24
BslI	CCNNNNNNNGG	5 cut(s)	180, 184, 191, 243, 433
BsmAI	GTCTC	3 cut(s)	114, 282, 438
BsmBI	CGTCTC	1 cut(s)	282
BsnI	GGCC	3 cut(s)	184, 198, 266
Bso31I	GGTCTC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	3 cut(s)	171, 192, 393
Bsp143I	GATC	3 cut(s)	28, 240, 406
Bsp1720I	GCTNAGC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	7 cut(s)	80, 120, 135, 164, 222, 234, 291
BspANI	GGCC	3 cut(s)	184, 198, 266
BspLI	GGNNCC	5 cut(s)	118, 139, 189, 376, 390
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	2 cut(s)	137, 388
BspTNI	GGTCTC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	159, 179, 393
BssMI	GATC	3 cut(s)	28, 240, 406
BssNI	GRCGYC	2 cut(s)	138, 219
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	3 cut(s)	181, 263, 428
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	138, 219
BstC8I	GCNNGC	2 cut(s)	78, 200
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	102, 289
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	31, 243, 409
BstMAI	GTCTC	3 cut(s)	114, 282, 438
BstMBI	GATC	3 cut(s)	28, 240, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 307, 388
BstNI	CCWGG	3 cut(s)	181, 263, 428
BstSCI	CCNGG	5 cut(s)	112, 179, 190, 261, 426
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	60, 258
BstXI	CCANNNNNNTGG	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	184, 198, 266
BtgI	CCRYGG	1 cut(s)	393
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	102, 289
Cac8I	GCNNGC	2 cut(s)	78, 200
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	259
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	25, 454
CviAII	CATG	1 cut(s)	394
CviQI	GTAC	2 cut(s)	25, 454
DdeI	CTNAG	1 cut(s)	438
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	3 cut(s)	30, 242, 408
DpnII	GATC	3 cut(s)	28, 240, 406
EaeI	YGGCCR	3 cut(s)	182, 196, 264
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	3 cut(s)	95, 109, 223
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	179, 261, 426
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	192
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	1 cut(s)	397
FaiI	YATR	4 cut(s)	50, 350, 395, 401
FatI	CATG	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	74, 136, 222, 272
FokI	GGATG	2 cut(s)	89, 296
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	4 cut(s)	74, 136, 222, 272
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	4 cut(s)	74, 136, 222, 272
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	184, 198, 266
HapII	CCGG	4 cut(s)	77, 114, 185, 192
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	2 cut(s)	138, 219
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	4 cut(s)	77, 114, 185, 192
HphI	GGTGA	4 cut(s)	29, 136, 202, 280
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	3 cut(s)	38, 281, 418
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	152, 221
HpyAV	CCTTC	4 cut(s)	19, 133, 316, 454
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	48, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 307, 388
HpyF3I	CTNAG	1 cut(s)	438
Hsp92I	GRCGYC	2 cut(s)	138, 219
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	28, 240, 406
LmnI	GCTCC	4 cut(s)	122, 187, 207, 380
Lsp1109I	GCAGC	2 cut(s)	60, 258
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	142, 286
MalI	GATC	3 cut(s)	30, 242, 408
MboI	GATC	3 cut(s)	28, 240, 406
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	3 cut(s)	171, 192, 393
MlsI	TGGCCA	2 cut(s)	198, 266
MluCI	AATT	2 cut(s)	303, 343
MluNI	TGGCCA	2 cut(s)	198, 266
Mly113I	GGCGCC	1 cut(s)	138
MnlI	CCTC	7 cut(s)	13, 65, 137, 169, 185, 250, 426
Mox20I	TGGCCA	2 cut(s)	198, 266
MroNI	GCCGGC	1 cut(s)	76
MroXI	GAANNNNTTC	3 cut(s)	8, 338, 464
MscI	TGGCCA	2 cut(s)	198, 266
MseI	TTAA	1 cut(s)	59
Msp20I	TGGCCA	2 cut(s)	198, 266
MspI	CCGG	4 cut(s)	77, 114, 185, 192
MspR9I	CCNGG	5 cut(s)	114, 181, 192, 263, 428
MvaI	CCWGG	3 cut(s)	181, 263, 428
MwoI	GCNNNNNNNGC	3 cut(s)	86, 307, 388
NaeI	GCCGGC	1 cut(s)	78
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	114, 192
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	28, 240, 406
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	5 cut(s)	118, 139, 189, 376, 390
NmeAIII	GCCGAG	2 cut(s)	140, 319
NmuCI	GTSAC	2 cut(s)	142, 286
PdiI	GCCGGC	1 cut(s)	78
PdmI	GAANNNNTTC	3 cut(s)	8, 338, 464
PfeI	GAWTC	1 cut(s)	334
Pfl23II	CGTACG	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	4 cut(s)	75, 137, 223, 273
PluTI	GGCGCC	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	3 cut(s)	179, 261, 426
PspGI	CCWGG	3 cut(s)	179, 261, 426
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	5 cut(s)	118, 139, 189, 376, 390
PspPI	GGNCC	1 cut(s)	259
PspPPI	RGGWCCY	1 cut(s)	259
RsaI	GTAC	2 cut(s)	26, 455
RsaNI	GTAC	2 cut(s)	25, 454
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	4 cut(s)	74, 136, 222, 272
Sau3AI	GATC	3 cut(s)	28, 240, 406
Sau96I	GGNCC	1 cut(s)	259
ScaI	AGTACT	1 cut(s)	455
ScrFI	CCNGG	5 cut(s)	114, 181, 192, 263, 428
SduI	GDGCHC	3 cut(s)	171, 192, 393
SetI	ASST	9 cut(s)	11, 19, 36, 75, 204, 210, 264, 327, 384
SfoI	GGCGCC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	303, 343
SsiI	CCGC	7 cut(s)	80, 120, 135, 164, 222, 234, 291
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	5 cut(s)	112, 179, 190, 261, 426
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	154, 255, 369
TasI	AATT	2 cut(s)	303, 343
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	2 cut(s)	138, 224
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TseFI	GTSAC	2 cut(s)	142, 286
TseI	GCWGC	2 cut(s)	73, 271
Tsp45I	GTSAC	2 cut(s)	142, 286
TspDTI	ATGAA	2 cut(s)	17, 335
VpaK11BI	GGWCC	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmnI	GAANNNNTTC	3 cut(s)	8, 338, 464
XspI	CTAG	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.