FvH4_6g46840

Protein CHLORORESPIRATORY REDUCTION 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014482
Physical Location & Seq
Forward (+)
35633434 .. 35634840
1407 bp
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UTR
Exon/CDS
Intron
FvH4_6g46840.t1

Sequence Viewer

Length: 465 bp
ATGTTCAACTCTGCAAGCAAAATGGTTCCAATGGAAGGAGCTTTGGAGAAACAGTTATTCCACAGTGGAGTTCTCTCTTTCAACTGCAGACAATCAACAAAGCAGGATTTTCGACCCTCTTTAAACCAACTAATGTCGACCAACAAAACCGAGTTCAGAAGTTCTTTAGTTCATCAGAGAAATATGGTCAAGGTTTGTGCAGCGAGGAGGAGAAGGGTACATACCGATAGTGAAACTTATGTGCTATTGGAACCAGGAGAGGATGAGAAGTTTGTTACGGAAGAAGAGTTAAGGGTCAAGTTGAAAGGTTGGCTTGAAAACTGGCCAGCCAAGAACCTTCCTTCTGATCTTGCGAGATATGAAAGCATTGATGATGCTGTTACTTATCTAGTAAGGTCTGTATGTGAACTTGAAATCCATGGAGATGTTGGTTCAGTTCAGTGGTATGAAGTTCGTTTAGAATGA

Protein Analysis

155

Amino Acids

17.87

Weight (kDa)

6.12

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRR7 PF12095 73 - 154 1.7e-28 Protein CHLORORESPIRATORY REDUCTION 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39210
fragaria_vesca FvH4_6g46840
malus_domestica MD09G1066900.v1.1
prunus_persica Prupe.3G254800_v2.0.a1
pyrus_communis pycom111g05620 pycom17g05950
rosa_chinensis RchiOBHm_Chr2g0165831
rosa_laevigata RLG00000021560
rosa_multiflora Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii Rroxscaffold_2G00085460
rosa_rugosa Rorug02G0518200
rosa_samantha Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana Rw2G048690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 323
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 5 cut(s) 7, 82, 304, 317, 413
AjnI CCWGG 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 325
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BbvI GCAGC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 255
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 255
BmiI GGNNCC 2 cut(s) 27, 252
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 220, 223
BseXI GCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 418
BspANI GGCC 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 27, 252
BspMAI CTGCAG 1 cut(s) 89
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 54, 65
Bst6I CTCTTC 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 16, 327
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 70, 446
Cac8I GCNNGC 2 cut(s) 16, 327
Csp6I GTAC 1 cut(s) 218
CviAII CATG 1 cut(s) 419
CviJI RGCY 4 cut(s) 41, 313, 325, 329
CviKI_1 RGCY 4 cut(s) 41, 313, 325, 329
CviQI GTAC 1 cut(s) 218
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
DraI TTTAAA 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 1 cut(s) 422
FaiI YATR 7 cut(s) 185, 222, 240, 360, 403, 420, 447
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 1 cut(s) 418
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 389
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 325
Hin1II CATG 1 cut(s) 422
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 138, 407
Hpy188I TCNGA 3 cut(s) 158, 177, 346
Hpy8I GTNNAC 2 cut(s) 138, 407
HpyAV CCTTC 4 cut(s) 29, 207, 347, 351
HpyCH4III ACNGT 2 cut(s) 54, 65
HpyCH4V TGCA 3 cut(s) 14, 87, 200
Hsp92II CATG 1 cut(s) 422
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 5 cut(s) 89, 240, 267, 307, 339
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 274, 379
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 2 cut(s) 293, 296
MlsI TGGCCA 1 cut(s) 325
MluNI TGGCCA 1 cut(s) 325
MnlI CCTC 4 cut(s) 127, 198, 201, 253
Mox20I TGGCCA 1 cut(s) 325
MscI TGGCCA 1 cut(s) 325
MseI TTAA 2 cut(s) 122, 290
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
NcoI CCATGG 1 cut(s) 418
NdeII GATC 1 cut(s) 346
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 2 cut(s) 27, 252
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 27, 252
PstI CTGCAG 1 cut(s) 89
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 423
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 122, 290
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 255
SetI ASST 5 cut(s) 43, 195, 310, 339, 398
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 423
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 54, 65
TaqI TCGA 2 cut(s) 112, 137
Tru1I TTAA 2 cut(s) 122, 290
Tru9I TTAA 2 cut(s) 122, 290
TscAI CASTG 2 cut(s) 70, 446
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 161, 375, 462
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 2 cut(s) 70, 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.