Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0014482

Physical Location & Seq

Genomic Coordinates Reverse (-)

3593413 .. 3594459

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTATCTGCAAAATCTTGTTTTGATTCAACATGCTTTTGGATTTGGAATTTTAGTACCAAGAAGCTGAAATTTGCAGGAAAAATGGTTTCAATGGAAGGAGTTTTGAAGAAGCAGTTGTTCCATGGTGGATTTCAGGCCTTTAACTGTAAAGAAGATACAAAGCGCCGGATTCGAGCTCCGTTGATGCAGTTAATGGCAACAGGAAAAAATGATGAGTCTGAGTACATGAGTTCTTCAGTTCATCTTAATCTGTTTAAAACAAGGAGTGTGCAAAGAGATGCAGTCAAGGTTTGTGCAGTGAGGAGGAGAAGGATATACCATAATAGTGAAACTTATGTGTTACTGGAGCCAGGAGAGGATGAGAAGTTTGTTTCAGAGGATGAGCTGAGGGACAAGTTAAAAGGTTGGCTGGAGAACTGGCCAGCCAAGAACCTTCCTCCTGACCTTGCAAGATTCGAAAGCATCGACGACGCCGTTTCTTATCTAGTGAGGTCTGTTTGTGAACTTGAAATTCATGGAGATGTAGGTTCAGTCCAGTGGTACGAAGTTCGAATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRR7

Protein Analysis

188

Amino Acids

21.76

Weight (kDa)

8.23

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39210
fragaria_vesca	FvH4_6g46840
malus_domestica	MD09G1066900.v1.1
prunus_persica	Prupe.3G254800_v2.0.a1
pyrus_communis	pycom111g05620 pycom17g05950
rosa_chinensis	RchiOBHm_Chr2g0165831
rosa_laevigata	RLG00000021560
rosa_multiflora	Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085460
rosa_rugosa	Rorug02G0518200
rosa_samantha	Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana	Rw2G048690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	422
AcsI	RAATTY	3 cut(s)	49, 71, 513
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	3 cut(s)	58, 227, 545
AgsI	TTSAA	4 cut(s)	30, 93, 109, 512
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	3 cut(s)	67, 179, 388
AluI	AGCT	3 cut(s)	67, 179, 388
Alw21I	GWGCWC	1 cut(s)	181
AoxI	GGCC	2 cut(s)	138, 422
ApoI	RAATTY	3 cut(s)	49, 71, 513
AspLEI	GCGC	1 cut(s)	168
AsuII	TTCGAA	2 cut(s)	459, 553
BalI	TGGCCA	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	488
BfoI	RGCGCY	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	3 cut(s)	177, 271, 474
BpmI	CTGGAG	2 cut(s)	368, 434
Bpu10I	CCTNAGC	1 cut(s)	389
Bpu14I	TTCGAA	2 cut(s)	459, 553
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	124
Bse1I	ACTGG	3 cut(s)	351, 425, 538
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	367, 388
BseMII	CTCAG	2 cut(s)	213, 380
BseNI	ACTGG	3 cut(s)	351, 425, 538
BseRI	GAGGAG	2 cut(s)	319, 322
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	140, 424
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	140, 424
Bsp119I	TTCGAA	2 cut(s)	459, 553
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp19I	CCATGG	1 cut(s)	124
BspANI	GGCC	2 cut(s)	140, 424
BspCNI	CTCAG	2 cut(s)	214, 381
BspLI	GGNNCC	1 cut(s)	351
BspT104I	TTCGAA	2 cut(s)	459, 553
BsrI	ACTGG	3 cut(s)	351, 425, 538
BssECI	CCNNGG	1 cut(s)	124
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	474
BstBI	TTCGAA	2 cut(s)	459, 553
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	2 cut(s)	222, 389
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	367, 388
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	140, 424
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	367, 388
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 545
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	1 cut(s)	168
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	3 cut(s)	57, 226, 544
CviAII	CATG	4 cut(s)	33, 125, 229, 518
CviJI	RGCY	8 cut(s)	67, 140, 179, 352, 388, 412, 424, 428
CviKI_1	RGCY	8 cut(s)	67, 140, 179, 352, 388, 412, 424, 428
CviQI	GTAC	3 cut(s)	57, 226, 544
DdeI	CTNAG	2 cut(s)	222, 389
DraI	TTTAAA	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	422
Ecl136II	GAGCTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	4 cut(s)	36, 128, 232, 521
FaiI	YATR	7 cut(s)	34, 126, 230, 319, 324, 339, 519
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	4 cut(s)	32, 124, 228, 517
FokI	GGATG	2 cut(s)	374, 395
FriOI	GRGCYC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	167
GsuI	CTGGAG	2 cut(s)	368, 434
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	140, 424
HapII	CCGG	1 cut(s)	169
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	36, 128, 232, 521
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	26, 172, 218, 456
HpaII	CCGG	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	2 cut(s)	223, 379
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	506
Hpy99I	CGWCG	2 cut(s)	473, 476
HpyAV	CCTTC	3 cut(s)	92, 306, 446
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	7 cut(s)	11, 77, 190, 274, 284, 299, 452
HpyF3I	CTNAG	2 cut(s)	222, 389
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	36, 128, 232, 521
HspAI	GCGC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	184, 349
LweI	GCATC	3 cut(s)	177, 271, 474
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	342
MboII	GAAGA	3 cut(s)	121, 167, 228
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	424
MluCI	AATT	3 cut(s)	49, 71, 513
MluNI	TGGCCA	1 cut(s)	424
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	7 cut(s)	297, 300, 352, 373, 384, 450, 486
Mox20I	TGGCCA	1 cut(s)	424
MscI	TGGCCA	1 cut(s)	424
MseI	TTAA	5 cut(s)	144, 194, 249, 258, 401
MslI	CAYNNNNRTG	2 cut(s)	327, 522
Msp20I	TGGCCA	1 cut(s)	424
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
NcoI	CCATGG	1 cut(s)	124
NlaIII	CATG	4 cut(s)	36, 128, 232, 521
NlaIV	GGNNCC	1 cut(s)	351
NspI	RCATGY	1 cut(s)	36
NspV	TTCGAA	2 cut(s)	459, 553
PceI	AGGCCT	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	2 cut(s)	465, 474
PfeI	GAWTC	3 cut(s)	26, 172, 456
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	351
RsaI	GTAC	3 cut(s)	58, 227, 545
RsaNI	GTAC	3 cut(s)	57, 226, 544
RseI	CAYNNNNRTG	2 cut(s)	327, 522
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	5 cut(s)	144, 194, 249, 258, 401
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	9 cut(s)	69, 181, 294, 390, 409, 438, 450, 497, 532
SfaNI	GCATC	3 cut(s)	177, 271, 474
SfuI	TTCGAA	2 cut(s)	459, 553
SmiMI	CAYNNNNRTG	2 cut(s)	327, 522
Sse9I	AATT	3 cut(s)	49, 71, 513
SseBI	AGGCCT	1 cut(s)	140
SspMI	CTAG	1 cut(s)	488
SstI	GAGCTC	1 cut(s)	181
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	4 cut(s)	175, 459, 468, 553
TasI	AATT	3 cut(s)	49, 71, 513
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	26, 172, 456
Tru1I	TTAA	5 cut(s)	144, 194, 249, 258, 401
Tru9I	TTAA	5 cut(s)	144, 194, 249, 258, 401
TscAI	CASTG	2 cut(s)	306, 545
TspDTI	ATGAA	2 cut(s)	233, 506
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	306, 545
XapI	RAATTY	3 cut(s)	49, 71, 513
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.