RLG00000021560

Protein CHLORORESPIRATORY REDUCTION 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014482
Physical Location & Seq
Forward (+)
76397012 .. 76397950
939 bp
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UTR
Exon/CDS
Intron
RLM00000021560

Sequence Viewer

Length: 465 bp
ATGCTCAATTTTGCAAGCAAAATGGTTCCAATGGAAGGAGCTTTGGAGAAACAGTTATGTCACAGTGGAGTTCTCTCTATCAACTGCAAACAAGCAACAAAGCAGGAGATTCAAACCCCTTTAAACCACCTAATGTCGACCAATAAAACCCAGTTCACAAGTTCTGTAGTCCATCACCGAAATACAGTCAAGGTTTGTGCTGTGAGGAGGAGAAGGATACATACTGATAGTGAAACTTATGTGTTACTGGAACCAGGAGAGGATGAGAAGTTTGTTACAGAAGAAGAGTTGAGGGTCAAGTTGAAAGGTTGGCTGGAAAACTGGCCAGCCAAGAACCTTCCTACTGATCTTGCTAGATTTGAAAGCATTGATGATGCTGTTACTTATTTAGTAAGGTCTGTTTGTGAACTTGAAATCCATGGAGATGTTGGTTCAGTTCAGTGGTACGAAGTTCATTTAGAATGA

Protein Analysis

155

Amino Acids

17.68

Weight (kDa)

5.98

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRR7 PF12095 73 - 154 6.3e-28 Protein CHLORORESPIRATORY REDUCTION 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39210
fragaria_vesca FvH4_6g46840
malus_domestica MD09G1066900.v1.1
prunus_persica Prupe.3G254800_v2.0.a1
pyrus_communis pycom111g05620 pycom17g05950
rosa_chinensis RchiOBHm_Chr2g0165831
rosa_laevigata RLG00000021560
rosa_multiflora Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii Rroxscaffold_2G00085460
rosa_rugosa Rorug02G0518200
rosa_samantha Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana Rw2G048690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 323
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 4 cut(s) 113, 304, 362, 413
AjnI CCWGG 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AoxI GGCC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 167
BalI TGGCCA 1 cut(s) 325
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BccI CCATC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 255
BciVI GTATCC 1 cut(s) 210
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 255
BmiI GGNNCC 2 cut(s) 27, 252
BmrFI CCNGG 1 cut(s) 255
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 3 cut(s) 151, 252, 326
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 35
BseNI ACTGG 3 cut(s) 151, 252, 326
BseRI GAGGAG 2 cut(s) 220, 223
BshFI GGCC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 418
BspANI GGCC 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 27, 252
BsrI ACTGG 3 cut(s) 151, 252, 326
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 3 cut(s) 54, 65, 187
Bst6I CTCTTC 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 16, 327
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 165
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 70, 446
Cac8I GCNNGC 2 cut(s) 16, 327
Csp6I GTAC 1 cut(s) 445
CviAII CATG 1 cut(s) 419
CviJI RGCY 4 cut(s) 41, 313, 325, 329
CviKI_1 RGCY 4 cut(s) 41, 313, 325, 329
CviQI GTAC 1 cut(s) 445
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
DraI TTTAAA 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 1 cut(s) 422
FaiI YATR 4 cut(s) 58, 222, 240, 420
FatI CATG 1 cut(s) 418
FblI GTMKAC 1 cut(s) 137
FokI GGATG 1 cut(s) 275
FspBI CTAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 325
Hin1II CATG 1 cut(s) 422
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 1 cut(s) 109
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 3 cut(s) 138, 156, 407
Hpy8I GTNNAC 3 cut(s) 138, 156, 407
HpyAV CCTTC 3 cut(s) 29, 207, 347
HpyCH4III ACNGT 3 cut(s) 54, 65, 187
HpyCH4V TGCA 2 cut(s) 14, 87
Hsp92II CATG 1 cut(s) 422
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 8 cut(s) 89, 164, 233, 240, 267, 299, 307, 339
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 354
MaeIII GTNAC 4 cut(s) 59, 243, 274, 379
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 2 cut(s) 293, 296
MlsI TGGCCA 1 cut(s) 325
MluCI AATT 1 cut(s) 7
MluNI TGGCCA 1 cut(s) 325
MnlI CCTC 4 cut(s) 198, 201, 253, 285
Mox20I TGGCCA 1 cut(s) 325
MscI TGGCCA 1 cut(s) 325
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
NcoI CCATGG 1 cut(s) 418
NdeII GATC 1 cut(s) 346
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 2 cut(s) 27, 252
NmuCI GTSAC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 27, 252
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 423
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 122
Sau3AI GATC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 255
SetI ASST 6 cut(s) 43, 132, 195, 310, 339, 398
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 423
Sse9I AATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 3 cut(s) 54, 65, 187
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 7
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 2 cut(s) 70, 446
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 443
TspRI CASTG 2 cut(s) 70, 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.